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Conserved domains on  [gi|2439300201|ref|NP_001403373|]
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zinc finger CCCH domain-containing protein 3 isoform 7 [Mus musculus]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 708395)

zinc finger CCCH domain-containing protein similar to cleavage and polyadenylation specificity factor (CPSF) subunit 4, which is part of the complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YTH1 super family cl25862
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 6-104 2.14e-10

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


The actual alignment was detected with superfamily member COG5084:

Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 59.88  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2439300201   6 FGRCNRGECCPYIHDPEKVAVCTRFVRGTCKKTDgSCPFSHHVS--KEKMPVCSYF-LKGICSNSN-CPYSHVYVSRKAE 81
Cdd:COG5084    86 RGSRLSTPNNHVNPVLSSSVVCKFFLRGLCKSGF-SCEFLHEYDlrSSQGPPCRSFsLKGSCSSGPsCGYSHIDPDSFAG 164

                          90       100
                  ....*....|....*....|....*.
gi 2439300201  82 VC---SDFLKGYCPLGAKCKKKHTLL 104
Cdd:COG5084   165 NCdqySGATYGFCPLGASCKFSHTLK 190
 
Name Accession Description Interval E-value
YTH1 COG5084
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 6-104 2.14e-10

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 59.88  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2439300201   6 FGRCNRGECCPYIHDPEKVAVCTRFVRGTCKKTDgSCPFSHHVS--KEKMPVCSYF-LKGICSNSN-CPYSHVYVSRKAE 81
Cdd:COG5084    86 RGSRLSTPNNHVNPVLSSSVVCKFFLRGLCKSGF-SCEFLHEYDlrSSQGPPCRSFsLKGSCSSGPsCGYSHIDPDSFAG 164

                          90       100
                  ....*....|....*....|....*.
gi 2439300201  82 VC---SDFLKGYCPLGAKCKKKHTLL 104
Cdd:COG5084   165 NCdqySGATYGFCPLGASCKFSHTLK 190
ZnF_C3H1 smart00356
zinc finger;
77-103 5.12e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 5.12e-03
                           10        20
                   ....*....|....*....|....*..
gi 2439300201   77 SRKAEVCSDFLKGYCPLGAKCKKKHTL 103
Cdd:smart00356   1 KYKTELCKFFKRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
YTH1 COG5084
Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin ...
 6-104 2.14e-10

Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only];


Pssm-ID: 227416 [Multi-domain]  Cd Length: 285  Bit Score: 59.88  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2439300201   6 FGRCNRGECCPYIHDPEKVAVCTRFVRGTCKKTDgSCPFSHHVS--KEKMPVCSYF-LKGICSNSN-CPYSHVYVSRKAE 81
Cdd:COG5084    86 RGSRLSTPNNHVNPVLSSSVVCKFFLRGLCKSGF-SCEFLHEYDlrSSQGPPCRSFsLKGSCSSGPsCGYSHIDPDSFAG 164

                          90       100
                  ....*....|....*....|....*.
gi 2439300201  82 VC---SDFLKGYCPLGAKCKKKHTLL 104
Cdd:COG5084   165 NCdqySGATYGFCPLGASCKFSHTLK 190
ZnF_C3H1 smart00356
zinc finger;
77-103 5.12e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 5.12e-03
                           10        20
                   ....*....|....*....|....*..
gi 2439300201   77 SRKAEVCSDFLKGYCPLGAKCKKKHTL 103
Cdd:smart00356   1 KYKTELCKFFKRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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