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Conserved domains on  [gi|2560506346|ref|NP_001410642|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial isoform 2 precursor [Mus musculus]

Protein Classification

zinc-finger domain-containing protein( domain architecture ID 10563207)

zinc-finger domain-containing protein similar to NADH:ubiquinone oxidoreductase subunit S6 (NDUFS6), an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to not be involved in catalysis; it harbors a Zn-binding site and is essential for biogenesis of mitochondrial complex I

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CHCC pfam10276
Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...
 75-95 1.51e-09

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.


:

Pssm-ID: 463041  Cd Length: 37  Bit Score: 50.23  E-value: 1.51e-09
                          10        20
                  ....*....|....*....|.
gi 2560506346  75 RIIACDGGGGALGHPKVYINL 95
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINL 22
 
Name Accession Description Interval E-value
zf-CHCC pfam10276
Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...
 75-95 1.51e-09

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.


Pssm-ID: 463041  Cd Length: 37  Bit Score: 50.23  E-value: 1.51e-09
                          10        20
                  ....*....|....*....|.
gi 2560506346  75 RIIACDGGGGALGHPKVYINL 95
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINL 22
COG4391 COG4391
Uncharacterized protein, contains Zn-finger domain [Function unknown];
65-95 8.71e-06

Uncharacterized protein, contains Zn-finger domain [Function unknown];


Pssm-ID: 443517  Cd Length: 54  Bit Score: 41.01  E-value: 8.71e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2560506346  65 AQQPVNEVEHRIIACDGGGGALGHPKVYINL 95
Cdd:COG4391     1 NAPETIEVTAKDVSCPGPEGWLGHPRVFLDI 31
 
Name Accession Description Interval E-value
zf-CHCC pfam10276
Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is ...
 75-95 1.51e-09

Zinc-finger domain; This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.


Pssm-ID: 463041  Cd Length: 37  Bit Score: 50.23  E-value: 1.51e-09
                          10        20
                  ....*....|....*....|.
gi 2560506346  75 RIIACDGGGGALGHPKVYINL 95
Cdd:pfam10276   2 RRVACDGGGGALGHPRVYINL 22
COG4391 COG4391
Uncharacterized protein, contains Zn-finger domain [Function unknown];
65-95 8.71e-06

Uncharacterized protein, contains Zn-finger domain [Function unknown];


Pssm-ID: 443517  Cd Length: 54  Bit Score: 41.01  E-value: 8.71e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2560506346  65 AQQPVNEVEHRIIACDGGGGALGHPKVYINL 95
Cdd:COG4391     1 NAPETIEVTAKDVSCPGPEGWLGHPRVFLDI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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