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Conserved domains on  [gi|37362629|ref|NP_010142|]
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Scm3p [Saccharomyces cerevisiae S288C]

Protein Classification

Scm3 domain-containing protein( domain architecture ID 10563965)

Scm3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Scm3 pfam10384
Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces ...
 92-141 1.53e-13

Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces cerevisiae to be required for G2/M progression and Cse4 localization. The C terminal region of Scm3 proteins is variable in size and sometimes consists of DNA binding motifs.


:

Pssm-ID: 463066  Cd Length: 54  Bit Score: 63.00  E-value: 1.53e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 37362629    92 VMERHKLADENMRKVWSNIISKYESI--EEQGDLVDLKTGEIVEDNGHIKTL 141
Cdd:pfam10384   1 LALLREESDERLKSRWESIFEKYGRIdfEDIGDEIDLATGEIVVDNGHLREL 52
 
Name Accession Description Interval E-value
Scm3 pfam10384
Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces ...
 92-141 1.53e-13

Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces cerevisiae to be required for G2/M progression and Cse4 localization. The C terminal region of Scm3 proteins is variable in size and sometimes consists of DNA binding motifs.


Pssm-ID: 463066  Cd Length: 54  Bit Score: 63.00  E-value: 1.53e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 37362629    92 VMERHKLADENMRKVWSNIISKYESI--EEQGDLVDLKTGEIVEDNGHIKTL 141
Cdd:pfam10384   1 LALLREESDERLKSRWESIFEKYGRIdfEDIGDEIDLATGEIVVDNGHLREL 52
 
Name Accession Description Interval E-value
Scm3 pfam10384
Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces ...
 92-141 1.53e-13

Centromere protein Scm3; Scm3 is a centromere protein that has been shown in Saccharomyces cerevisiae to be required for G2/M progression and Cse4 localization. The C terminal region of Scm3 proteins is variable in size and sometimes consists of DNA binding motifs.


Pssm-ID: 463066  Cd Length: 54  Bit Score: 63.00  E-value: 1.53e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 37362629    92 VMERHKLADENMRKVWSNIISKYESI--EEQGDLVDLKTGEIVEDNGHIKTL 141
Cdd:pfam10384   1 LALLREESDERLKSRWESIFEKYGRIdfEDIGDEIDLATGEIVVDNGHLREL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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