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Conserved domains on  [gi|6320360|ref|NP_010440|]
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DNA-directed RNA polymerase I subunit RPA14 [Saccharomyces cerevisiae S288C]

Protein Classification

RNA_polI_A14 domain-containing protein( domain architecture ID 10548397)

RNA_polI_A14 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_polI_A14 pfam08203
Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the ...
 15-137 5.12e-37

Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the final two subunits of Saccharomyces cerevisiae RNA polymerase I and is proposed to play a role in the recruitment of pol I to the promoter.


:

Pssm-ID: 462394  Cd Length: 115  Bit Score: 122.45  E-value: 5.12e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320360     15 TLNTPVVIHaTQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAAdadaaavaNTSLNIDTNLSSSISQLKRIQR 94
Cdd:pfam08203   1 ALNTPTVIH-VGSSQHLSKDEAERFLTEFIDASESNISGLNGSSDSSEAS--------GTGLSSDTGSSSVLSQLKRIQR 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 6320360     95 DFKGLPPAQDF-SAAPIQVSTTEKKETSIGVSATGGKKTTFADE 137
Cdd:pfam08203  72 DLRGLPPLSSEvQESPSEEKIKFDDDDSVTKSATGNKKIKFDDE 115
 
Name Accession Description Interval E-value
RNA_polI_A14 pfam08203
Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the ...
 15-137 5.12e-37

Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the final two subunits of Saccharomyces cerevisiae RNA polymerase I and is proposed to play a role in the recruitment of pol I to the promoter.


Pssm-ID: 462394  Cd Length: 115  Bit Score: 122.45  E-value: 5.12e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320360     15 TLNTPVVIHaTQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAAdadaaavaNTSLNIDTNLSSSISQLKRIQR 94
Cdd:pfam08203   1 ALNTPTVIH-VGSSQHLSKDEAERFLTEFIDASESNISGLNGSSDSSEAS--------GTGLSSDTGSSSVLSQLKRIQR 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 6320360     95 DFKGLPPAQDF-SAAPIQVSTTEKKETSIGVSATGGKKTTFADE 137
Cdd:pfam08203  72 DLRGLPPLSSEvQESPSEEKIKFDDDDSVTKSATGNKKIKFDDE 115
 
Name Accession Description Interval E-value
RNA_polI_A14 pfam08203
Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the ...
 15-137 5.12e-37

Yeast RNA polymerase I subunit RPA14; This is a family of yeast proteins. A14 is one of the final two subunits of Saccharomyces cerevisiae RNA polymerase I and is proposed to play a role in the recruitment of pol I to the promoter.


Pssm-ID: 462394  Cd Length: 115  Bit Score: 122.45  E-value: 5.12e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320360     15 TLNTPVVIHaTQLPQHVSTDEVLQFLESFIDEKENIIDSTTMNTISGNAAdadaaavaNTSLNIDTNLSSSISQLKRIQR 94
Cdd:pfam08203   1 ALNTPTVIH-VGSSQHLSKDEAERFLTEFIDASESNISGLNGSSDSSEAS--------GTGLSSDTGSSSVLSQLKRIQR 71

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 6320360     95 DFKGLPPAQDF-SAAPIQVSTTEKKETSIGVSATGGKKTTFADE 137
Cdd:pfam08203  72 DLRGLPPLSSEvQESPSEEKIKFDDDDSVTKSATGNKKIKFDDE 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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