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Conserved domains on  [gi|6322357|ref|NP_012431|]
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import motor complex subunit PAM16 [Saccharomyces cerevisiae S288C]

Protein Classification

mitochondrial import inner membrane translocase subunit TIM16( domain architecture ID 10508427)

mitochondrial import inner membrane translocase subunit TIM16 regulates ATP-dependent protein translocation into the mitochondrial matrix

Gene Ontology:  GO:0005744|GO:0030150
PubMed:  35328774

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pam16 pfam03656
Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence ...
 1-128 1.95e-61

Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70.


:

Pssm-ID: 252088  Cd Length: 127  Bit Score: 185.17  E-value: 1.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322357      1 MAHRAFIQVIITGTQVFGKAFAEAYRQA-ASQSVKQGA-TNASRRGTGKGEYGGITLDESCKILNIEEskgDLNMDKINN 78
Cdd:pfam03656   1 MAHRAAIQVIITGTQVVGKAFARAYRQEaAAQRVAAGAgTNASRRGTAKSNYGGISLDESCQILNVEE---DLNMEEVNK 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 6322357     79 RFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQREKNAKAKAGDAST 128
Cdd:pfam03656  78 RYEHLFEVNDKSKGGSFYLQSKVYRAKERLDEELAIREKEAKAKAGDAST 127
 
Name Accession Description Interval E-value
Pam16 pfam03656
Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence ...
 1-128 1.95e-61

Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70.


Pssm-ID: 252088  Cd Length: 127  Bit Score: 185.17  E-value: 1.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322357      1 MAHRAFIQVIITGTQVFGKAFAEAYRQA-ASQSVKQGA-TNASRRGTGKGEYGGITLDESCKILNIEEskgDLNMDKINN 78
Cdd:pfam03656   1 MAHRAAIQVIITGTQVVGKAFARAYRQEaAAQRVAAGAgTNASRRGTAKSNYGGISLDESCQILNVEE---DLNMEEVNK 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 6322357     79 RFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQREKNAKAKAGDAST 128
Cdd:pfam03656  78 RYEHLFEVNDKSKGGSFYLQSKVYRAKERLDEELAIREKEAKAKAGDAST 127
PTZ00100 PTZ00100
DnaJ chaperone protein; Provisional
 53-108 4.60e-03

DnaJ chaperone protein; Provisional


Pssm-ID: 240265  Cd Length: 116  Bit Score: 34.83  E-value: 4.60e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 6322357    53 ITLDESCKILNIEESKgdlNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERL 108
Cdd:PTZ00100  62 MSKSEAYKILNISPTA---SKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLL 114
 
Name Accession Description Interval E-value
Pam16 pfam03656
Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence ...
 1-128 1.95e-61

Pam16; The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70.


Pssm-ID: 252088  Cd Length: 127  Bit Score: 185.17  E-value: 1.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6322357      1 MAHRAFIQVIITGTQVFGKAFAEAYRQA-ASQSVKQGA-TNASRRGTGKGEYGGITLDESCKILNIEEskgDLNMDKINN 78
Cdd:pfam03656   1 MAHRAAIQVIITGTQVVGKAFARAYRQEaAAQRVAAGAgTNASRRGTAKSNYGGISLDESCQILNVEE---DLNMEEVNK 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 6322357     79 RFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQREKNAKAKAGDAST 128
Cdd:pfam03656  78 RYEHLFEVNDKSKGGSFYLQSKVYRAKERLDEELAIREKEAKAKAGDAST 127
PTZ00100 PTZ00100
DnaJ chaperone protein; Provisional
 53-108 4.60e-03

DnaJ chaperone protein; Provisional


Pssm-ID: 240265  Cd Length: 116  Bit Score: 34.83  E-value: 4.60e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 6322357    53 ITLDESCKILNIEESKgdlNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERL 108
Cdd:PTZ00100  62 MSKSEAYKILNISPTA---SKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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