NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6322358|ref|NP_012432|]
View 

Gsm1p [Saccharomyces cerevisiae S288C]

Protein Classification

Zn(II)2Cys6 transcription factor domain-containing protein( domain architecture ID 10637797)

Zn(II)2Cys6 transcription factor domain-containing protein belongs to a subclass of zinc finger proteins mainly found in fungi

Gene Ontology:  GO:0008270
PubMed:  9290251

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 14-44 1.13e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


:

Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 45.43  E-value: 1.13e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 6322358      14 KSIQTACEFCHTKHIQCDVGRP-CQNCLKRNI 44
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL 32
 
Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 14-44 1.13e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 45.43  E-value: 1.13e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 6322358      14 KSIQTACEFCHTKHIQCDVGRP-CQNCLKRNI 44
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL 32
Zn_clus pfam00172
Fungal Zn(2)-Cys(6) binuclear cluster domain;
18-43 2.35e-06

Fungal Zn(2)-Cys(6) binuclear cluster domain;


Pssm-ID: 395120 [Multi-domain]  Cd Length: 39  Bit Score: 44.60  E-value: 2.35e-06
                          10        20
                  ....*....|....*....|....*..
gi 6322358     18 TACEFCHTKHIQCDVGRP-CQNCLKRN 43
Cdd:pfam00172   1 TACDNCRKRKVKCDGKKPaCSRCIKNG 27
GAL4 cd00067
GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like ...
 16-44 4.59e-06

GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations


Pssm-ID: 238023 [Multi-domain]  Cd Length: 36  Bit Score: 43.42  E-value: 4.59e-06
                        10        20        30
                ....*....|....*....|....*....|
gi 6322358   16 IQTACEFCHTKHIQCDVG-RPCQNCLKRNI 44
Cdd:cd00067   2 VRRACDRCRRRKIKCDGEkPPCSNCIKLGL 31
 
Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 14-44 1.13e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 45.43  E-value: 1.13e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 6322358      14 KSIQTACEFCHTKHIQCDVGRP-CQNCLKRNI 44
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL 32
Zn_clus pfam00172
Fungal Zn(2)-Cys(6) binuclear cluster domain;
18-43 2.35e-06

Fungal Zn(2)-Cys(6) binuclear cluster domain;


Pssm-ID: 395120 [Multi-domain]  Cd Length: 39  Bit Score: 44.60  E-value: 2.35e-06
                          10        20
                  ....*....|....*....|....*..
gi 6322358     18 TACEFCHTKHIQCDVGRP-CQNCLKRN 43
Cdd:pfam00172   1 TACDNCRKRKVKCDGKKPaCSRCIKNG 27
GAL4 cd00067
GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like ...
 16-44 4.59e-06

GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations


Pssm-ID: 238023 [Multi-domain]  Cd Length: 36  Bit Score: 43.42  E-value: 4.59e-06
                        10        20        30
                ....*....|....*....|....*....|
gi 6322358   16 IQTACEFCHTKHIQCDVG-RPCQNCLKRNI 44
Cdd:cd00067   2 VRRACDRCRRRKIKCDGEkPPCSNCIKLGL 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH