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Conserved domains on  [gi|398365367|ref|NP_014787|]
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Elg1p [Saccharomyces cerevisiae S288C]

Protein Classification

ATP-binding protein( domain architecture ID 1005821)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain, similar to human ATPase family AAA domain-containing protein 5 that is involved in DNA damage response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04195 super family cl35251
replication factor C large subunit; Provisional
 335-508 1.46e-05

replication factor C large subunit; Provisional


The actual alignment was detected with superfamily member PRK04195:

Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 48.38  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 335 ILHGN-SIGKKTLIQTIMREIagddnSYQIYEVNSNMNRSKKDLldilldfttTHYVKDSSKRKSDYG----LVLFNDVD 409
Cdd:PRK04195  43 LLYGPpGVGKTSLAHALANDY-----GWEVIELNASDQRTADVI---------ERVAGEAATSGSLFGarrkLILLDEVD 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 410 VLFKEHDRGYWAMISKLCEFSRRPLVLTCKD---LSLVP----SELIALaseqnslfhtKKISTSTVYAFLTKYLKSLEI 482
Cdd:PRK04195 109 GIHGNEDRGGARAILELIKKAKQPIILTANDpydPSLRElrnaCLMIEF----------KRLSTRSIVPVLKRICRKEGI 178

                        170       180
                 ....*....|....*....|....*.
gi 398365367 483 EVCDDWLRDVVKQNNADIRKCLMHLQ 508
Cdd:PRK04195 179 ECDDEALKEIAERSGGDLRSAINDLQ 204
 
Name Accession Description Interval E-value
PRK04195 PRK04195
replication factor C large subunit; Provisional
 335-508 1.46e-05

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 48.38  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 335 ILHGN-SIGKKTLIQTIMREIagddnSYQIYEVNSNMNRSKKDLldilldfttTHYVKDSSKRKSDYG----LVLFNDVD 409
Cdd:PRK04195  43 LLYGPpGVGKTSLAHALANDY-----GWEVIELNASDQRTADVI---------ERVAGEAATSGSLFGarrkLILLDEVD 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 410 VLFKEHDRGYWAMISKLCEFSRRPLVLTCKD---LSLVP----SELIALaseqnslfhtKKISTSTVYAFLTKYLKSLEI 482
Cdd:PRK04195 109 GIHGNEDRGGARAILELIKKAKQPIILTANDpydPSLRElrnaCLMIEF----------KRLSTRSIVPVLKRICRKEGI 178

                        170       180
                 ....*....|....*....|....*.
gi 398365367 483 EVCDDWLRDVVKQNNADIRKCLMHLQ 508
Cdd:PRK04195 179 ECDDEALKEIAERSGGDLRSAINDLQ 204
 
Name Accession Description Interval E-value
PRK04195 PRK04195
replication factor C large subunit; Provisional
 335-508 1.46e-05

replication factor C large subunit; Provisional


Pssm-ID: 235250 [Multi-domain]  Cd Length: 482  Bit Score: 48.38  E-value: 1.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 335 ILHGN-SIGKKTLIQTIMREIagddnSYQIYEVNSNMNRSKKDLldilldfttTHYVKDSSKRKSDYG----LVLFNDVD 409
Cdd:PRK04195  43 LLYGPpGVGKTSLAHALANDY-----GWEVIELNASDQRTADVI---------ERVAGEAATSGSLFGarrkLILLDEVD 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398365367 410 VLFKEHDRGYWAMISKLCEFSRRPLVLTCKD---LSLVP----SELIALaseqnslfhtKKISTSTVYAFLTKYLKSLEI 482
Cdd:PRK04195 109 GIHGNEDRGGARAILELIKKAKQPIILTANDpydPSLRElrnaCLMIEF----------KRLSTRSIVPVLKRICRKEGI 178

                        170       180
                 ....*....|....*....|....*.
gi 398365367 483 EVCDDWLRDVVKQNNADIRKCLMHLQ 508
Cdd:PRK04195 179 ECDDEALKEIAERSGGDLRSAINDLQ 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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