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Conserved domains on  [gi|6753984|ref|NP_034415|]
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somatoliberin preproprotein [Mus musculus]

Protein Classification

glucagon family hormone( domain architecture ID 10443965)

glucagon family hormone similar to glucagon, somatoliberin and VIP peptides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hormone_2 pfam00123
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 31-58 1.18e-09

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


:

Pssm-ID: 459681  Cd Length: 28  Bit Score: 48.98  E-value: 1.18e-09
                          10        20
                  ....*....|....*....|....*...
gi 6753984     31 HVDAIFTTNYRKLLSQLYARKVIQDIMN 58
Cdd:pfam00123   1 HADGTFTSDYSKVLDQLAAKKFLQWLMN 28
 
Name Accession Description Interval E-value
Hormone_2 pfam00123
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 31-58 1.18e-09

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


Pssm-ID: 459681  Cd Length: 28  Bit Score: 48.98  E-value: 1.18e-09
                          10        20
                  ....*....|....*....|....*...
gi 6753984     31 HVDAIFTTNYRKLLSQLYARKVIQDIMN 58
Cdd:pfam00123   1 HADGTFTSDYSKVLDQLAAKKFLQWLMN 28
GLUCA smart00070
Glucagon like hormones;
31-57 1.77e-08

Glucagon like hormones;


Pssm-ID: 128384  Cd Length: 27  Bit Score: 45.97  E-value: 1.77e-08
                           10        20
                   ....*....|....*....|....*..
gi 6753984      31 HVDAIFTTNYRKLLSQLYARKVIQDIM 57
Cdd:smart00070   1 HADGTFTSDYSKYLDQLAAKKFLQWLM 27
 
Name Accession Description Interval E-value
Hormone_2 pfam00123
Peptide hormone; This family contains glucagon, GIP, secretin and VIP.
 31-58 1.18e-09

Peptide hormone; This family contains glucagon, GIP, secretin and VIP.


Pssm-ID: 459681  Cd Length: 28  Bit Score: 48.98  E-value: 1.18e-09
                          10        20
                  ....*....|....*....|....*...
gi 6753984     31 HVDAIFTTNYRKLLSQLYARKVIQDIMN 58
Cdd:pfam00123   1 HADGTFTSDYSKVLDQLAAKKFLQWLMN 28
GLUCA smart00070
Glucagon like hormones;
31-57 1.77e-08

Glucagon like hormones;


Pssm-ID: 128384  Cd Length: 27  Bit Score: 45.97  E-value: 1.77e-08
                           10        20
                   ....*....|....*....|....*..
gi 6753984      31 HVDAIFTTNYRKLLSQLYARKVIQDIM 57
Cdd:smart00070   1 HADGTFTSDYSKYLDQLAAKKFLQWLM 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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