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Conserved domains on  [gi|6754950|ref|NP_035146|]
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alpha-1-acid glycoprotein 2 precursor [Mus musculus]

Protein Classification

lipocalin/fatty-acid binding family protein( domain architecture ID 14443811)

lipocalin/fatty-acid binding family protein such as lipocalins, which are transporters for small hydrophobic molecules, including lipids, steroid hormones, bilins, and retinoids

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-194 3.03e-93

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


:

Pssm-ID: 381226  Cd Length: 173  Bit Score: 269.61  E-value: 3.03e-93
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950   21 PEHVNITIGdPITNETLSWLSDKWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLINDTMELREYHTIDDHCVYNSTHLGI 100
Cdd:cd19451   1 PACANLTAA-PITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950  101 QRENGTLSKYVGGVKIFADLIVLKMHGAFMLAFDLKDEKKRGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWK 180
Cdd:cd19451  80 QRENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWK 159
                       170
                ....*....|....
gi 6754950  181 KDRCSQQEKQQLEL 194
Cdd:cd19451 160 KDKCEPLEKQHEEE 173
 
Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-194 3.03e-93

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381226  Cd Length: 173  Bit Score: 269.61  E-value: 3.03e-93
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950   21 PEHVNITIGdPITNETLSWLSDKWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLINDTMELREYHTIDDHCVYNSTHLGI 100
Cdd:cd19451   1 PACANLTAA-PITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950  101 QRENGTLSKYVGGVKIFADLIVLKMHGAFMLAFDLKDEKKRGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWK 180
Cdd:cd19451  80 QRENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWK 159
                       170
                ....*....|....
gi 6754950  181 KDRCSQQEKQQLEL 194
Cdd:cd19451 160 KDKCEPLEKQHEEE 173
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
43-181 4.26e-21

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 84.80  E-value: 4.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950     43 KWFFIGAAVlNPDYRQEIQKTQMVFFNLTPnLINDTMELREYHTIDDHCVYNSTHLGIQRENGTLSKYVGGVKIFADLIV 122
Cdd:pfam00061   3 KWYLIASAN-FNELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTEEPGKLGVEFDEYAGGRKVKV 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6754950    123 LKMHGAFMLAFDLKDEKK----RGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWKK 181
Cdd:pfam00061  81 LTTDYDNYLIFYQKGDKDgkttIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
 
Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-194 3.03e-93

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381226  Cd Length: 173  Bit Score: 269.61  E-value: 3.03e-93
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950   21 PEHVNITIGdPITNETLSWLSDKWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLINDTMELREYHTIDDHCVYNSTHLGI 100
Cdd:cd19451   1 PACANLTAA-PITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTV 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950  101 QRENGTLSKYVGGVKIFADLIVLKMHGAFMLAFDLKDEKKRGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWK 180
Cdd:cd19451  80 QRENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWK 159
                       170
                ....*....|....
gi 6754950  181 KDRCSQQEKQQLEL 194
Cdd:cd19451 160 KDKCEPLEKQHEEE 173
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
43-181 4.26e-21

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 84.80  E-value: 4.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950     43 KWFFIGAAVlNPDYRQEIQKTQMVFFNLTPnLINDTMELREYHTIDDHCVYNSTHLGIQRENGTLSKYVGGVKIFADLIV 122
Cdd:pfam00061   3 KWYLIASAN-FNELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTEEPGKLGVEFDEYAGGRKVKV 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6754950    123 LKMHGAFMLAFDLKDEKK----RGLSLNAKRPDITPELREVFQKAVTHVGMDESEIIFVDWKK 181
Cdd:pfam00061  81 LTTDYDNYLIFYQKGDKDgkttIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
lipocalin_ApoM_AGP cd19415
apolipoprotein M and alpha1-acid glycoprotein family; Apolipoprotein M (ApoM) is mainly found ...
21-176 2.28e-19

apolipoprotein M and alpha1-acid glycoprotein family; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) and is expressed in the liver and in the kidney; it is associated to a lesser extend with low density lipids and triglyceride rich lipoproteins. ApoM is involved in lipid transport and can bind sphingosine-1-phosphate, myristic acid, palmitic acid and stearic acid, retinol, all-trans-retinoic acid and 9-cis-retinoic acid. Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381190  Cd Length: 153  Bit Score: 80.46  E-value: 2.28e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950   21 PEHVNitigdPITNETLSWLSDKWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLINDTMELREYHTIDDHCVYNSTHLGI 100
Cdd:cd19415   2 EELVK-----PLSLADPSQILGKWVFIAGASDSEEYLAILKLVDSSWVNLTASSDEDTIVLRQGNRLNGKCIYSTVNATL 76
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6754950  101 QrENGTLSKYVGGVKIFADLIVLKMHGAFMLAFD--LKDEKKRGLSLNAKRPDITPELREVFQKAVTHVGMDEsEIIF 176
Cdd:cd19415  77 E-GSGTTFTYTNASETSTGLLLTSCPDCLLLNFNstSGEEKGRSLYLYSRTGTLEKSELEEFKKQAECLGFSP-PFIY 152
lipocalin_ApoM cd19450
Apolipoprotein M; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) ...
43-184 1.25e-04

Apolipoprotein M; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) and is expressed in the liver and the kidney; it is associated to a lesser extend with low density lipids and triglyceride rich lipoproteins. It is involved in lipid transport and can bind sphingosine-1-phosphate, myristic acid, palmitic acid and stearic acid, retinol, all-trans-retinoic acid and 9-cis-retinoic acid. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381225  Cd Length: 161  Bit Score: 40.92  E-value: 1.25e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6754950   43 KWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLiNDTMELREYHTIDDHCVYNS-THLGIQRENGTLSKYVGGVKIFADLI 121
Cdd:cd19450  20 RWYFVAAAAWDEDDLATFKPLDNIVFNMQKGS-NDTLQLTATIRIGGQCVPRKwTYRLTEHTGSFELRTEGRPDMKWDGF 98
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6754950  122 VLKMHGAFMLAFDLKDEKKRGLsLNAKRPDITPELREVFQKAVTHVGMdeSEIIFVDWKKDRC 184
Cdd:cd19450  99 SANCPGCIILQETDQEEYNRFL-LYARSPHPPEECIEEFKSKTSCLGM--EDFLLTPLQQGYC 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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