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Conserved domains on  [gi|162287073|ref|NP_037068|]
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beta-crystallin B1 [Rattus norvegicus]

Protein Classification

beta/gamma crystallin family protein( domain architecture ID 10440390)

beta/gamma crystallin family protein such as beta- and gamma-crystallins, which are structural components of the vertebrate eye lens

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
148-230 3.03e-36

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


:

Pssm-ID: 459639  Cd Length: 82  Bit Score: 123.37  E-value: 3.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073  148 KICLFEGANFKGNTMEIqEDDVPSLWVYGFCDRVGSITVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAV 227
Cdd:pfam00030   1 KIVLYEKENFQGRSIEL-TDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSL 79

                  ...
gi 162287073  228 RRL 230
Cdd:pfam00030  80 RPI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
58-140 6.37e-35

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


:

Pssm-ID: 459639  Cd Length: 82  Bit Score: 119.91  E-value: 6.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073   58 RLVVFEQENFQGRRVEFSGECLNLGDRGF-DRVRSLIVLSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWtsSYRSDRLMS 136
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFnSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDW--GAPNDRIGS 78

                  ....
gi 162287073  137 FRPI 140
Cdd:pfam00030  79 LRPI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
148-230 3.03e-36

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 123.37  E-value: 3.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073  148 KICLFEGANFKGNTMEIqEDDVPSLWVYGFCDRVGSITVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAV 227
Cdd:pfam00030   1 KIVLYEKENFQGRSIEL-TDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSL 79

                  ...
gi 162287073  228 RRL 230
Cdd:pfam00030  80 RPI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
148-230 2.58e-35

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 121.08  E-value: 2.58e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073   148 KICLFEGANFKGNTMEIqEDDVPSLWVYGFCDRVGSITVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAV 227
Cdd:smart00247   1 KITLYEDENFQGRSYEL-SDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSI 79

                   ...
gi 162287073   228 RRL 230
Cdd:smart00247  80 RRI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
58-140 6.37e-35

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 119.91  E-value: 6.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073   58 RLVVFEQENFQGRRVEFSGECLNLGDRGF-DRVRSLIVLSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWtsSYRSDRLMS 136
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFnSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDW--GAPNDRIGS 78

                  ....
gi 162287073  137 FRPI 140
Cdd:pfam00030  79 LRPI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
58-140 3.14e-31

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 110.29  E-value: 3.14e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073    58 RLVVFEQENFQGRRVEFSGECLNLGDRGF-DRVRSLIVLSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSyrSDRLMS 136
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSrDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGF--NDQISS 78

                   ....
gi 162287073   137 FRPI 140
Cdd:smart00247  79 IRRI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
148-230 3.03e-36

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 123.37  E-value: 3.03e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073  148 KICLFEGANFKGNTMEIqEDDVPSLWVYGFCDRVGSITVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAV 227
Cdd:pfam00030   1 KIVLYEKENFQGRSIEL-TDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSL 79

                  ...
gi 162287073  228 RRL 230
Cdd:pfam00030  80 RPI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
148-230 2.58e-35

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 121.08  E-value: 2.58e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073   148 KICLFEGANFKGNTMEIqEDDVPSLWVYGFCDRVGSITVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQAV 227
Cdd:smart00247   1 KITLYEDENFQGRSYEL-SDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSI 79

                   ...
gi 162287073   228 RRL 230
Cdd:smart00247  80 RRI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
58-140 6.37e-35

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 119.91  E-value: 6.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073   58 RLVVFEQENFQGRRVEFSGECLNLGDRGF-DRVRSLIVLSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWtsSYRSDRLMS 136
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFnSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDW--GAPNDRIGS 78

                  ....
gi 162287073  137 FRPI 140
Cdd:pfam00030  79 LRPI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
58-140 3.14e-31

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 110.29  E-value: 3.14e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 162287073    58 RLVVFEQENFQGRRVEFSGECLNLGDRGF-DRVRSLIVLSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSyrSDRLMS 136
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSrDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGF--NDQISS 78

                   ....
gi 162287073   137 FRPI 140
Cdd:smart00247  79 IRRI 82
Inhibitor_I36 pfam03995
Peptidase inhibitor family I36; This domain is currently only found in a small set of S. ...
147-202 2.88e-03

Peptidase inhibitor family I36; This domain is currently only found in a small set of S. coelicolor secreted proteins. There are four conserved cysteines that probably form two disulphide bonds. Proteins 2SCK31.15C and SCO3675 also have probable beta-propellers at their C-termini. This family includes Swiss:P01077 a known peptidase inhibitor of known structure. This protein has a crystallin like fold pfam00030 and is distantly related by sequence. It is not known whether other members of this family are peptidase inhibitors.


Pssm-ID: 427638  Cd Length: 69  Bit Score: 35.44  E-value: 2.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 162287073  147 HKICLFEGANFKGNTMEIQEDDVPSLWvyGFCDRVGSITVSSGTWV-GYQYPGYRGY 202
Cdd:pfam03995  11 GYFCLWSGANGTGRMAELSGSDALVGA--GMNDKARSVWNRTGSWVtVYTDANYGGR 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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