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Conserved domains on  [gi|114145505|ref|NP_038587|]
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heat shock protein 105 kDa isoform 1 [Mus musculus]

Protein Classification

type III pantothenate kinase; acetate/propionate family kinase( domain architecture ID 10185197)

type III pantothenate kinase catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis| acetate/propionate family kinase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ASKHA_NBD_HSP70_HSPH1 cd11739
nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar ...
2-381 0e+00

nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar proteins; HSPH1, also called heat shock protein 105 kDa, antigen NY-CO-25, heat shock 110 kDa protein, acts as a nucleotide-exchange factor (NEF) for chaperone proteins HSPA1A and HSPA1B, promoting the release of ADP from HSPA1A/B thereby triggering client/substrate protein release. It prevents the aggregation of denatured proteins in cells under severe stress, on which the ATP levels decrease markedly. It inhibits HSPA8/HSC70 ATPase and chaperone activities. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


:

Pssm-ID: 466845 [Multi-domain]  Cd Length: 380  Bit Score: 774.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd11739    1 SVVGFDVGFQNCYIAVARAGGIETVANEFSDRCTPSVVSFGSKNRTIGVAAKNQQITNANNTVSNFKRFHGRAFNDPFVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd11739   81 KEKENLSYDLVPLKNGGVGVKVMYLDEEHHFSIEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd11739  161 IVGLNCLRLMNDMTAVALNYGIYKQDLPAPDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPYLGGRNFDEKLV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd11739  241 EHFCAEFKTKYKLDVKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPL 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 381
Cdd:cd11739  321 YSLMEQTQLKVEDISAVEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 380
 
Name Accession Description Interval E-value
ASKHA_NBD_HSP70_HSPH1 cd11739
nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar ...
2-381 0e+00

nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar proteins; HSPH1, also called heat shock protein 105 kDa, antigen NY-CO-25, heat shock 110 kDa protein, acts as a nucleotide-exchange factor (NEF) for chaperone proteins HSPA1A and HSPA1B, promoting the release of ADP from HSPA1A/B thereby triggering client/substrate protein release. It prevents the aggregation of denatured proteins in cells under severe stress, on which the ATP levels decrease markedly. It inhibits HSPA8/HSC70 ATPase and chaperone activities. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466845 [Multi-domain]  Cd Length: 380  Bit Score: 774.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd11739    1 SVVGFDVGFQNCYIAVARAGGIETVANEFSDRCTPSVVSFGSKNRTIGVAAKNQQITNANNTVSNFKRFHGRAFNDPFVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd11739   81 KEKENLSYDLVPLKNGGVGVKVMYLDEEHHFSIEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd11739  161 IVGLNCLRLMNDMTAVALNYGIYKQDLPAPDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPYLGGRNFDEKLV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd11739  241 EHFCAEFKTKYKLDVKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPL 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 381
Cdd:cd11739  321 YSLMEQTQLKVEDISAVEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 380
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
3-709 0e+00

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 616.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505    3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:pfam00012   1 VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKNTVFSVKRLIGRKFSDPVVQR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   83 EKENLSYDLVPMKNGGVGIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:pfam00012  81 DIKHLPYKVVKLPNGDAGVEVRYLGET--FTPEQISAMILQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQI 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  163 VGLNCLRLMNDMTAVALNYGIYKQDlpnaeeKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:pfam00012 159 AGLNVLRIVNEPTAAALAYGLDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  243 HFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMND-KDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:pfam00012 233 HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADgKDVSGTLTRAKFEELVADLFERTLEPV 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVP-- 399
Cdd:pfam00012 313 EKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPls 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  400 FPISLVWNhDSEETEGVHEVFSRNHaAPFSKVLTFLRRgPFELEAFYSDPQGVPYPEAkIGRFVVQNVSAQKDGEkSRVK 479
Cdd:pfam00012 393 LGIETLGG-VMTKLIPRNTTIPTKK-SQIFSTAADNQT-AVEIQVYQGEREMAPDNKL-LGSFELDGIPPAPRGV-PQIE 467
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  480 VKVRVNTHGIFTISTASMVEkvpteeedgssleadmecpnqrptessDVDKNIQQDNSEAGTQPQVQtdgqqtsqsppsp 559
Cdd:pfam00012 468 VTFDIDANGILTVSAKDKGT---------------------------GKEQEITIEASEGLSDDEIE------------- 507
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  560 eltseesktpdadkanekkvdqppeakkpkikvvnvELPVEANlvwqlgrdllnmyietegKMIMQDKLEKERNDAKNAV 639
Cdd:pfam00012 508 ------------------------------------RMVKDAE------------------EYAEEDKKRKERIEAKNEA 533
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  640 EECVYEFRDKLcGPYEKFICEQEHEKflrlLTETEDWLYEEGEDQAKQAYIDKLEELMKMGTPVKVRFQE 709
Cdd:pfam00012 534 EEYVYSLEKSL-EEEGDKVPEAEKSK----VESAIEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ 598
DnaK COG0443
Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones] ...
3-493 4.66e-94

Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440212 [Multi-domain]  Cd Length: 473  Bit Score: 303.67  E-value: 4.66e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVG-SQSCyIAVARAGGIETIANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:COG0443    1 AIGIDLGtTNSV-VAVVEGGEPQVIPNAEGRRTLPSVVAFPKDGEVlVGEAAKRQAVTNPGRTIRSIKRLLGRSLFDEAT 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QkekenlsydlvpmknggVGIKVmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:COG0443   80 E-----------------VGGKR--------YSPEEISALILRKLKADAEAYLGEPVTRAVITVPAYFDDAQRQATKDAA 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGiykQDLPNAEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:COG0443  135 RIAGLEVLRLLNEPTAAALAYG---LDKGKEEET--ILVY-DLGGGTFDVSILRLGDGVFEVLATGGDTHLGGDDFDQAL 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTDLPLNiecFMNDKDVSGKMNRSQFEELCAELLQKIEV 319
Cdd:COG0443  209 ADYVAPEFGKEEGIDLRLDPAALQRLREAAEKAKIeLSSADEAEINLP---FSGGKHLDVELTRAEFEELIAPLVERTLD 285
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 320 PLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAfkVREFSVTdavp 399
Cdd:COG0443  286 PVRQALADAGLSPSDIDAVLLVGGSTRMPAVRERVKELFGKEPLKGVDPDEAVALGAAIQAGVLAGD--VKDLDVT---- 359
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 400 fPISLvwnhdSEETEG--VHEVFSRNHAAPFSKVLTFL----RRGPFELEAFYSDPQGVPYPEaKIGRFVVQNVSAQKDG 473
Cdd:COG0443  360 -PLSL-----GIETLGgvFTKLIPRNTTIPTAKSQVFStaadNQTAVEIHVLQGERELAADNR-SLGRFELTGIPPAPRG 432
                        490       500
                 ....*....|....*....|
gi 114145505 474 EkSRVKVKVRVNTHGIFTIS 493
Cdd:COG0443  433 V-PQIEVTFDIDANGILSVS 451
PRK13411 PRK13411
molecular chaperone DnaK; Provisional
3-568 4.33e-84

molecular chaperone DnaK; Provisional


Pssm-ID: 184039 [Multi-domain]  Cd Length: 653  Bit Score: 282.41  E-value: 4.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKN-RTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:PRK13411   4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGdRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDD--TE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVmymdEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:PRK13411  82 EERSRVPYTCVKGRDDTVNVQI----RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDlpnaeEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:PRK13411 158 IAGLEVLRIINEPTAAALAYGLDKQD-----QEQLILVF-DLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIV 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSS---NSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:PRK13411 232 DWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSmltTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATI 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILSPafKVREFSVTDA 397
Cdd:PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFgGKQPDRSVNPDEAVALGAAIQAGVLGG--EVKDLLLLDV 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 398 VPFPISLvwnhdseETEGvhEVFS----RNHAAPFSKVLTF--------------------LRR-----GPFELEAFYSD 448
Cdd:PRK13411 390 TPLSLGI-------ETLG--EVFTkiieRNTTIPTSKSQVFstatdgqtsveihvlqgeraMAKdnkslGKFLLTGIPPA 460
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 449 PQGVPYPEA--KIGRFVVQNVSAQKDGEKSRVKVKVrVNTHGIftisTASMVEKVPTE-----EEDGSSLEAdMECPNQR 521
Cdd:PRK13411 461 PRGVPQIEVsfEIDVNGILKVSAQDQGTGREQSIRI-TNTGGL----SSNEIERMRQEaekyaEEDRRRKQL-IELKNQA 534
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|
gi 114145505 522 PTESSDVDKNIqQDNSEAGTQPQVQTDGQQTSQ---SPPSPELTSEESKT 568
Cdd:PRK13411 535 DSLLYSYESTL-KENGELISEELKQRAEQKVEQleaALTDPNISLEELKQ 583
 
Name Accession Description Interval E-value
ASKHA_NBD_HSP70_HSPH1 cd11739
nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar ...
2-381 0e+00

nucleotide-binding domain (NBD) of heat shock 105kDa/110kDa protein 1 (HSPH1) and similar proteins; HSPH1, also called heat shock protein 105 kDa, antigen NY-CO-25, heat shock 110 kDa protein, acts as a nucleotide-exchange factor (NEF) for chaperone proteins HSPA1A and HSPA1B, promoting the release of ADP from HSPA1A/B thereby triggering client/substrate protein release. It prevents the aggregation of denatured proteins in cells under severe stress, on which the ATP levels decrease markedly. It inhibits HSPA8/HSC70 ATPase and chaperone activities. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466845 [Multi-domain]  Cd Length: 380  Bit Score: 774.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd11739    1 SVVGFDVGFQNCYIAVARAGGIETVANEFSDRCTPSVVSFGSKNRTIGVAAKNQQITNANNTVSNFKRFHGRAFNDPFVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd11739   81 KEKENLSYDLVPLKNGGVGVKVMYLDEEHHFSIEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd11739  161 IVGLNCLRLMNDMTAVALNYGIYKQDLPAPDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPYLGGRNFDEKLV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd11739  241 EHFCAEFKTKYKLDVKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPL 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 381
Cdd:cd11739  321 YSLMEQTQLKVEDISAVEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 380
ASKHA_NBD_HSP70_HSPA4_like cd10228
nucleotide-binding domain (NBD) of the heat shock 70 kDa protein 4 (HSPA4)-like subfamily; ...
4-381 0e+00

nucleotide-binding domain (NBD) of the heat shock 70 kDa protein 4 (HSPA4)-like subfamily; This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4; APG-2; HS24/P52; hsp70 RY; HSPH2), HSPA4L (also known as 70-kDa heat shock protein 4-like; APG-1; HSPH3; OSP94), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1; HSP105; HSP105A; HSP105B; NY-CO-25). They belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466826 [Multi-domain]  Cd Length: 378  Bit Score: 765.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQKE 83
Cdd:cd10228    1 VGFDFGNLSCYIAVARAGGIETIANEYSDRCTPSVVSFGEKNRSMGVAAKNQAITNLKNTVSGFKRLLGRKFDDPFVQKE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 163
Cdd:cd10228   81 LKHLPYKVVKLPNGSVGIKVQYLGEEHVFTPEQVTAMLLTKLKETAETALKTKVVDCVISVPSYFTDAERRAVLDAAQIA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 164 GLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEH 243
Cdd:cd10228  161 GLNCLRLLNDTTAVALAYGIYKQDLPAEEEKPRNVVFVDMGHSSLQVSVCAFNKGKLKVLATAADPNLGGRDFDELLVEH 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 244 FCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLHS 323
Cdd:cd10228  241 FAEEFKTKYKIDVKSKPRALLRLLTECEKLKKLMSANATELPLNIECFMDDKDVSGKMKRAEFEELCAPLFARVEVPLRS 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 114145505 324 LMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 381
Cdd:cd10228  321 ALADSKLKPEDIHSVEIVGGSTRIPAIKEIIKKVFGKEPSTTLNQDEAVARGCALQCA 378
ASKHA_NBD_HSP70_HSPA4 cd11737
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 4 (HSPA4) and similar proteins; ...
2-382 0e+00

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 4 (HSPA4) and similar proteins; HSPA4, also called HSP70RY, , HS24/P52, hsp70 RY, and HSPH2, or heat shock 70-related protein APG-2, responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466843 [Multi-domain]  Cd Length: 381  Bit Score: 706.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd11737    1 SVVGFDLGFQSCYVAVARAGGIETVANEYSDRSTPACVSFGPKNRSIGAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd11737   81 AEKPSLAYELVQLPTGTTGIKVMYMEEERNFTIEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd11737  161 IAGLNCLRLMNETTAVALAYGIYKQDLPAPEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDPTLGGRKFDEVLV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd11737  241 NHFCEEFGKKYKLDIKSKIRALLRLFQECEKLKKLMSANASDLPLNIECFMNDIDVSGTMNRGQFEEMCADLLARVEPPL 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAI 382
Cdd:cd11737  321 RSVLEQAKLKKEDIYAVEIVGGATRIPAVKERISKFFGKEVSTTLNADEAVARGCALQCAI 381
ASKHA_NBD_HSP70_HSPA4L cd11738
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 4L (HSPA4L) and similar proteins; ...
2-384 0e+00

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 4L (HSPA4L) and similar proteins; HSPA4L, also called heat shock 70-related protein APG-1, heat-shock protein family A member 4-like protein, HSPA4-like protein, osmotic stress protein 94, or HSPH3, possesses chaperone activity in vitro where it inhibits aggregation of citrate synthase. It is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466844 [Multi-domain]  Cd Length: 383  Bit Score: 686.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd11738    1 SVVGIDVGFQNCYIAVARSGGIETIANEYSDRCTPACVSLGSRNRAIGNAAKSQIVTNAKNTIHGFKKFHGRAFDDPFVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd11738   81 AEKIKLPYELQKMPNGSTGVKVRYLDEERVFAIEQVTGMLLTKLKETSENALKKPVADCVISVPSFFTDAERRSVMDAAQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd11738  161 IAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSICAFNKGKLKVLATTFDPYLGGRNFDEVLV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd11738  241 DYFCEEFKTKYKLNVKENIRALLRLYQECEKLKKLMSANASDLPLNIECFMNDIDVSSKMNRAQFEELCASLLARVEPPL 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384
Cdd:cd11738  321 KAVMEQAKLQREDIYSIEIVGGATRIPAVKERIAKFFGKDISTTLNADEAVARGCALQCAILS 383
ASKHA_NBD_HSP70_HSP105-110-like cd11732
nucleotide-binding domain (NBD) of the 105/110 kDa heat shock protein family; The 105/110 kDa ...
4-381 0e+00

nucleotide-binding domain (NBD) of the 105/110 kDa heat shock protein family; The 105/110 kDa heat shock proteins family includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4; APG-2; HS24/P52; hsp70 RY; HSPH2), HSPA4L (also known as 70-kDa heat shock protein 4-like; APG-1; HSPH3; OSP94), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1; HSP105; HSP105A; HSP105B; NY-CO-25), Saccharomyces cerevisiae Sse1p, Sse2p and a sea urchin sperm receptor. They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466838 [Multi-domain]  Cd Length: 377  Bit Score: 618.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQKE 83
Cdd:cd11732    1 VGIDFGNQNSVVAAARRGGIDIVLNEVSNRKTPTLVGFTEKERLIGEAAKSQQKSNYKNTIRNFKRLIGLKFDDPEVQKE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 163
Cdd:cd11732   81 IKLLPFKLVELEDGKVGIEVSYNGEEVVFSPEQVLAMLLGKLKEIAEAANKGEVKDCVISVPGYYTDAQRRALLDAAEIA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 164 GLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEH 243
Cdd:cd11732  161 GLNCLRLINETTAAALDYGIYKSDLLESEEKPRIVAFVDMGHSSTQVSIAAFTKGKLKVLSTAFDRNLGGRDFDRALVEH 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 244 FCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNsTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLHS 323
Cdd:cd11732  241 FAEEFKKKYKIDPLENPKARLRLLDACEKLKKVLSAN-GEAPLNVECLMEDIDFSGQIKREEFEELIQPLLARLEAPIKK 319
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 114145505 324 LMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCA 381
Cdd:cd11732  320 ALAQAGLTKEDLHSVEIVGGGTRVPAVKEAIAEVFGKDLSTTLNADEAVARGCALQAA 377
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
3-709 0e+00

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 616.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505    3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:pfam00012   1 VIGIDLGTTNSCVAVMEGGGPEVIANAEGNRTTPSVVAFTPKERLVGQAAKNQAVTNPKNTVFSVKRLIGRKFSDPVVQR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   83 EKENLSYDLVPMKNGGVGIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:pfam00012  81 DIKHLPYKVVKLPNGDAGVEVRYLGET--FTPEQISAMILQKLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGQI 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  163 VGLNCLRLMNDMTAVALNYGIYKQDlpnaeeKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:pfam00012 159 AGLNVLRIVNEPTAAALAYGLDKTD------KERNIAVYDLGGGTFDVSILEIGRGVFEVKATNGDTHLGGEDFDLRLVD 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  243 HFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMND-KDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:pfam00012 233 HLAEEFKKKYGIDLSKDKRALQRLREAAEKAKIELSSNQTNINLPFITAMADgKDVSGTLTRAKFEELVADLFERTLEPV 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVP-- 399
Cdd:pfam00012 313 EKALKDAGLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDFLLLDVTPls 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  400 FPISLVWNhDSEETEGVHEVFSRNHaAPFSKVLTFLRRgPFELEAFYSDPQGVPYPEAkIGRFVVQNVSAQKDGEkSRVK 479
Cdd:pfam00012 393 LGIETLGG-VMTKLIPRNTTIPTKK-SQIFSTAADNQT-AVEIQVYQGEREMAPDNKL-LGSFELDGIPPAPRGV-PQIE 467
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  480 VKVRVNTHGIFTISTASMVEkvpteeedgssleadmecpnqrptessDVDKNIQQDNSEAGTQPQVQtdgqqtsqsppsp 559
Cdd:pfam00012 468 VTFDIDANGILTVSAKDKGT---------------------------GKEQEITIEASEGLSDDEIE------------- 507
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  560 eltseesktpdadkanekkvdqppeakkpkikvvnvELPVEANlvwqlgrdllnmyietegKMIMQDKLEKERNDAKNAV 639
Cdd:pfam00012 508 ------------------------------------RMVKDAE------------------EYAEEDKKRKERIEAKNEA 533
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  640 EECVYEFRDKLcGPYEKFICEQEHEKflrlLTETEDWLYEEGEDQAKQAYIDKLEELMKMGTPVKVRFQE 709
Cdd:pfam00012 534 EEYVYSLEKSL-EEEGDKVPEAEKSK----VESAIEWLKDELEGDDKEEIEAKTEELAQVSQKIGERMYQ 598
ASKHA_NBD_HSP70_AtHsp70-14-like cd24095
nucleotide-binding domain (NBD) of Arabidopsis thaliana heat shock 70 kDa protein 14-16 and ...
1-392 0e+00

nucleotide-binding domain (NBD) of Arabidopsis thaliana heat shock 70 kDa protein 14-16 and similar proteins; The subgroup includes Arabidopsis thaliana Hsp70-14, also known as heat shock 70 kDa protein 14; heat shock protein 91), Hsp70-15 (also known as heat shock 70 kDa protein 15), and Hsp70-16 (also known as heat shock 70 kDa protein 16). In cooperation with other chaperones, they are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions. Members in this subgroup belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466945 [Multi-domain]  Cd Length: 389  Bit Score: 566.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   1 MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:cd24095    1 MSVVGIDFGNENCVVAVARKGGIDVVLNEESNRETPSMVSFGEKQRFLGEAAAASILMNPKNTISQLKRLIGRKFDDPEV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd24095   81 QRDLKLFPFKVTEGPDGEIGINVNYLGEQKVFTPEQILAMLLSNLKRIAEKNLKTPVTDCVISVPVYFTDAQRRAMLDAA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDLPNAEekPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd24095  161 QIAGLNCLRLMNETTATALAYGIYKTDLPETD--PTNVVFVDVGHSSTQVCVVAFKKGQLKVLSHAFDRNLGGRDFDEVL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNStDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVP 320
Cdd:cd24095  239 FDHFAAEFKEKYKIDVKSNKKASLRLRAACEKVKKILSANP-EAPLNIECLMEDKDVKGMITREEFEELAAPLLERLLEP 317
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114145505 321 LHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREF 392
Cdd:cd24095  318 LEKALADSGLTVDQIHSVEVVGSGSRIPAILKILTKFFGKEPSRTMNASECVARGCALQCAMLSPTFKVREF 389
ASKHA_NBD_HSP70_ScSse cd24094
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae heat shock protein homolog Sse and ...
4-390 0e+00

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae heat shock protein homolog Sse and similar proteins; The subgroup includes two Saccharomyces cerevisiae heat shock protein homologs, Sse1 and Sse2. They may have calcium-dependent calmodulin-binding activities. Both Sse1 and Sse2 belong to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins.


Pssm-ID: 466944 [Multi-domain]  Cd Length: 385  Bit Score: 565.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQKE 83
Cdd:cd24094    1 VGLDLGNLNSVIAVARNRGIDIIVNEVSNRSTPSLVGFGPKSRYLGEAAKTQETSNFKNTVGSLKRLIGRTFSDPEVAEE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPMkNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 163
Cdd:cd24094   81 EKYFTAKLVDA-NGEVGAEVNYLGEKHVFSATQLAAMYLGKLKDTTQAELKAPVSDVVISVPGWFTDEQRRAILDAAEIA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 164 GLNCLRLMNDMTAVALNYGIYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEH 243
Cdd:cd24094  160 GLNPLRLMNDTTAAALGYGITKTDLPEPEEKPRIVAFVDIGHSSYTVSIVAFKKGQLTVKGTAYDRHFGGRDFDKALTDH 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 244 FCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTdLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLHS 323
Cdd:cd24094  240 FADEFKEKYKIDVRSNPKAYFRLLAAAEKLKKVLSANAQ-APLNVESLMNDIDVSSMLKREEFEELIAPLLERVTAPLEK 318
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114145505 324 LMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAFKVR 390
Cdd:cd24094  319 ALAQAGLTKDEIDFVELVGGTTRVPALKESISAFFGKPLSTTLNQDEAVARGAAFACAILSPVFRVR 385
ASKHA_NBD_HSP70_HSPA1-like cd24028
nucleotide-binding domain (NBD) of the 70-kDa heat shock protein 1 (HSPA1)-like family; The ...
3-383 2.64e-124

nucleotide-binding domain (NBD) of the 70-kDa heat shock protein 1 (HSPA1)-like family; The HSPA1-like family includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM), HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3), BiP (also known as HSP70 family protein 5 /HSPA5; 70-kDa heat shock protein 5; glucose-regulated protein 78/GRP78; immunoglobulin heavy chain-binding protein), HSPA6 (also known as heat shock 70kDa protein 6; HSP70B'), HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B), HSPA8 (heat shock 70kDa protein 8, also known as Lipopolysaccharide-associated protein 1/LAP1; HSC70; HSP73; HSPA10), HSPA13 (also known as 70-kDa heat shock protein 13; STCH; microsomal stress-70 protein ATPase core; stress-70 protein chaperone microsome-associated 60 kDa protein), as well as Saccharmoyces cerevisiae Hsp70 chaperone Ssb1-2 and heat shock protein Ssa1-4. HSPA1A/1B, HSPA1L, HSPA2 and HSPA6-8 are molecular chaperones implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. They play pivotal roles in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. BiP plays a key role in protein folding and quality control in the endoplasmic reticulum lumen. It plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). HSPA13 has peptide-independent ATPase activity. All family members belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466878 [Multi-domain]  Cd Length: 376  Bit Score: 379.16  E-value: 2.64e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:cd24028    1 AIGIDLGTTYSCVAVWRNGKVEIIPNDQGNRTTPSYVAFTDGERLVGEAAKNQAASNPENTIFDVKRLIGRKFDDPSVQS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  83 EKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:cd24028   81 DIKHWPFKVVEDEDGKPKIEVTYKGEEKTFSPEEISAMILKKLKEIAEAYLGRPVTKAVITVPAYFNDAQRQATKDAATI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 163 VGLNCLRLMNDMTAVALNYGiykQDLPNAEEKpRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:cd24028  161 AGLNVLRIINEPTAAALAYG---LDKKSSGER-NVLVF-DLGGGTFDVSLLSIDNGVFEVKATAGDTHLGGEDFDNRLVE 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 243 HFCAEFKTKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTDlpLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd24028  236 YLVEEFKKKHGKDLRENPRAMRRLRSACERAKRtLSTSTSAT--IEIDSLYDGIDFETTITRAKFEELCEDLFKKCLEPV 313
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd24028  314 EKVLKDAKLSKDDIDEVVLVGGSTRIPKIQELLSEFFgGKELCKSINPDEAVAYGAAIQAAIL 376
ASKHA_NBD_HSP70_HYOU1 cd10230
nucleotide-binding domain (NBD) of hypoxia up-regulated protein 1 (HYOU1) and similar proteins; ...
2-381 1.88e-101

nucleotide-binding domain (NBD) of hypoxia up-regulated protein 1 (HYOU1) and similar proteins; This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, 170 kDa glucose-regulated protein/GRP170; HSP12A; 150 kDa oxygen-regulated protein/ORP150; GRP-170; ORP-150) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. It may play a role as a molecular chaperone and participate in protein folding. HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (also known as BiP, Grp78 or HspA5) and may also act as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. Members in this subgroup belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466828 [Multi-domain]  Cd Length: 353  Bit Score: 318.67  E-value: 1.88e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAG-GIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGrafndpfi 80
Cdd:cd10230    1 AVLGIDLGSEFIKVALVKPGvPFEIVLNEESKRKTPSAVAFRNGERLFGDDALALATRFPENTFSYLKDLLG-------- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 qkekenlsydlvpmknggvgikvmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd10230   73 -------------------------------YSVEELVAMILEYAKSLAESFAGEPIKDAVITVPPFFTQAQRQALLDAA 121
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIykqDLPNAEEKPRVVVFVDMGHSSFQVSACAF------------NKGKLKVLGTAFD 228
Cdd:cd10230  122 EIAGLNVLSLINDNTAAALNYGI---DRRFENNEPQNVLFYDMGASSTSATVVEFssvkekdkgknkTVPQVEVLGVGWD 198
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 229 PFLGGKNFDEKLVEHFCAEFKTKYKLDAKSK--IRALLRLHQECEKLKKLMSSNsTDLPLNIECFMNDKDVSGKMNRSQF 306
Cdd:cd10230  199 RTLGGLEFDLRLADHLADEFNEKHKKDKDVRtnPRAMAKLLKEANRVKEVLSAN-TEAPASIESLYDDIDFRTKITREEF 277
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114145505 307 EELCAELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGK-DVSTTLNADEAVARGCALQCA 381
Cdd:cd10230  278 EELCADLFERVVAPIEEALEKAGLTLDDIDSVELIGGGTRVPKVQEALKEALGRkELGKHLNADEAAALGAAFYAA 353
ASKHA_NBD_HSP70_BiP cd10241
nucleotide-binding domain (NBD) of binding-immunoglobulin protein (BiP) and similar proteins; ...
2-383 1.34e-100

nucleotide-binding domain (NBD) of binding-immunoglobulin protein (BiP) and similar proteins; This subfamily includes human BiP (also known as HSP70 family protein 5 /HSPA5; 70-kDa heat shock protein 5; glucose-regulated protein 78/GRP78; immunoglobulin heavy chain-binding protein), Sacchaormyces cerevisiae BiP (also known as Grp78p), Arabidopsis thaliana BiP1-3 (also known as luminal-binding protein 1-3) and related proteins. BiP plays a key role in protein folding and quality control in the endoplasmic reticulum lumen. It plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). BiP may function as an allosteric modulator for SEC61 channel-forming translocon complex, likely cooperating with SEC62 to enable the productive insertion of these precursors into SEC61 channel. It appears to specifically regulate translocation of precursors having inhibitory residues in their mature region that weaken channel gating. BiP may also play a role in apoptosis and cell proliferation. Plant BiP may be required for pollen development and pollen tube growth. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466837 [Multi-domain]  Cd Length: 376  Bit Score: 317.62  E-value: 1.34e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQ-SCyIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:cd10241    2 TVIGIDLGTTySC-VGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPENTVFDVKRLIGRKFDDKEV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKENLSYDLVPmKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd10241   81 QKDIKLLPFKIVN-KNGKPYIQVEVKGEKKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDlpnaEEKpRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd10241  160 TIAGLNVLRIINEPTAAAIAYGLDKKG----GEK-NILVF-DLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRV 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSnSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVP 320
Cdd:cd10241  234 MDHFIKLFKKKTGKDISKDKRAVQKLRREVEKAKRALSS-QHQARIEIESLFDGEDFSETLTRAKFEELNMDLFRKTLKP 312
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114145505 321 LHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd10241  313 VQKVLEDAGLKKSDIDEIVLVGGSTRIPKVQQLLKDFFnGKEPSRGINPDEAVAYGAAVQAGIL 376
ASKHA_NBD_HSP70_HSPA1 cd10233
nucleotide-binding domain (NBD) of 70-kDa heat shock protein 1 (HSPA1) and similar proteins; ...
4-383 1.59e-95

nucleotide-binding domain (NBD) of 70-kDa heat shock protein 1 (HSPA1) and similar proteins; This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM), HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3), HSPA6 (also known as heat shock 70kDa protein 6; HSP70B'), HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B), and HSPA8 (heat shock 70kDa protein 8, also known as Lipopolysaccharide-associated protein 1/LAP1; HSC70; HSP73; HSPA10). They are molecular chaperones implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. They play pivotal roles in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis and ADP release, mediated by co-chaperones. The subfamily also includes Saccharomyces cerevisiae heat shock protein Ssa1-4, which may play a role in the transport of polypeptides both across the mitochondrial membranes and into the endoplasmic reticulum. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466831 [Multi-domain]  Cd Length: 375  Bit Score: 304.17  E-value: 1.59e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQ-SCyIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:cd10233    2 IGIDLGTTySC-VGVWQNDKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDPVVQS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  83 EKENLSYDLVPmKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:cd10233   81 DMKHWPFKVVS-GGDKPKIQVEYKGETKTFTPEEISSMVLTKMKEIAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGTI 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 163 VGLNCLRLMNDMTAVALNYGIYKQDlpnaeEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:cd10233  160 AGLNVLRIINEPTAAAIAYGLDKKG-----KGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVN 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 243 HFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSnSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLH 322
Cdd:cd10233  235 HFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSS-STQASIEIDSLFEGIDFYTSITRARFEELCADLFRSTLEPVE 313
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114145505 323 SLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd10233  314 KVLRDAKLDKSQIHEIVLVGGSTRIPKVQKLLQDFFnGKELNKSINPDEAVAYGAAVQAAIL 375
DnaK COG0443
Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones] ...
3-493 4.66e-94

Molecular chaperone DnaK (HSP70) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440212 [Multi-domain]  Cd Length: 473  Bit Score: 303.67  E-value: 4.66e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVG-SQSCyIAVARAGGIETIANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:COG0443    1 AIGIDLGtTNSV-VAVVEGGEPQVIPNAEGRRTLPSVVAFPKDGEVlVGEAAKRQAVTNPGRTIRSIKRLLGRSLFDEAT 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QkekenlsydlvpmknggVGIKVmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:COG0443   80 E-----------------VGGKR--------YSPEEISALILRKLKADAEAYLGEPVTRAVITVPAYFDDAQRQATKDAA 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGiykQDLPNAEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:COG0443  135 RIAGLEVLRLLNEPTAAALAYG---LDKGKEEET--ILVY-DLGGGTFDVSILRLGDGVFEVLATGGDTHLGGDDFDQAL 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTDLPLNiecFMNDKDVSGKMNRSQFEELCAELLQKIEV 319
Cdd:COG0443  209 ADYVAPEFGKEEGIDLRLDPAALQRLREAAEKAKIeLSSADEAEINLP---FSGGKHLDVELTRAEFEELIAPLVERTLD 285
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 320 PLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPAfkVREFSVTdavp 399
Cdd:COG0443  286 PVRQALADAGLSPSDIDAVLLVGGSTRMPAVRERVKELFGKEPLKGVDPDEAVALGAAIQAGVLAGD--VKDLDVT---- 359
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 400 fPISLvwnhdSEETEG--VHEVFSRNHAAPFSKVLTFL----RRGPFELEAFYSDPQGVPYPEaKIGRFVVQNVSAQKDG 473
Cdd:COG0443  360 -PLSL-----GIETLGgvFTKLIPRNTTIPTAKSQVFStaadNQTAVEIHVLQGERELAADNR-SLGRFELTGIPPAPRG 432
                        490       500
                 ....*....|....*....|
gi 114145505 474 EkSRVKVKVRVNTHGIFTIS 493
Cdd:COG0443  433 V-PQIEVTFDIDANGILSVS 451
ASKHA_NBD_HSP70_Ssb cd24093
nucleotide-binding domain (NBD) of Saccharmoyces cerevisiae Hsp70 chaperone Ssb and similar ...
4-383 2.33e-90

nucleotide-binding domain (NBD) of Saccharmoyces cerevisiae Hsp70 chaperone Ssb and similar proteins; Ssb is ribosome-bound, Hsp70-type chaperone that assists in the co-translational folding of newly synthesized proteins in the cytosol. It stimulates folding by interacting with nascent chains, binding to short, largely hydrophobic sequences exposed by unfolded proteins, thereby stabilizing longer, more slowly translated, and aggregation-prone nascent polypeptides and domains that cannot fold stably until fully synthesized. Ssb cooperates with a specific Hsp40/Hsp70 co-chaperone termed the ribosome-associated complex (RAC), which stimulates the ATPase activity of the ribosome-associated pool of Ssbs and switches it to the high affinity substrate binding state. Saccharmoyces cerevisiae Ssb are encoded by two genes, SSB1 and SSB2. Ssb1p is also known as cold-inducible protein YG101. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466943 [Multi-domain]  Cd Length: 375  Bit Score: 290.35  E-value: 2.33e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARaGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQKE 83
Cdd:cd24093    2 IGIDLGTTYSCVATYE-SSVEIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPmKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 163
Cdd:cd24093   81 MKTWPFKVID-VNGNPVIEVQYLGETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAIA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 164 GLNCLRLMNDMTAVALNYGIYKqdlpNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEH 243
Cdd:cd24093  160 GLNVLRIINEPTAAAIAYGLGA----GKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEH 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 244 FCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSnSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLHS 323
Cdd:cd24093  236 FKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSS-VTQTTVEVDSLFDGEDFESSITRARFEDLNAALFKSTLEPVEQ 314
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114145505 324 LMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd24093  315 VLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFdGKQLEKSINPDEAVAYGAAVQGAIL 375
ASKHA_NBD_HSP70_DnaK-like cd10234
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein DnaK and similar ...
3-384 9.98e-87

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein DnaK and similar proteins; This subfamily includes Escherichia coli chaperone protein DnaK (also known as heat shock 70 kDa protein/HSP70), human mitochondrial heat shock 70 kDa protein HSPA9 (also known as mitochondrial stress-70 protein; mortalin; 75 kDa glucose-regulated protein/GRP-75; HSPA9B; MOT; peptide-binding protein 74/PBP74), Saccharomyces cerevisiae stress-seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and Ssc3p (also called extracellular mutant protein 10/Ecm10), and Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p; Ssh1p; mtHSP70 homolog). They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively.


Pssm-ID: 466832 [Multi-domain]  Cd Length: 373  Bit Score: 280.90  E-value: 9.98e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVG-SQSCyIAVARAGGIETIANEFSDRCTPSVISF-GSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPfi 80
Cdd:cd10234    1 IIGIDLGtTNSC-VAVMEGGKPTVIPNAEGGRTTPSVVAFtKDGERLVGQPAKRQAVTNPENTIFSIKRFMGRRYKEV-- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKENLSYDLVPMKNGGVGIKVMymDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd10234   78 EVERKQVPYPVVSAGNGDAWVEIG--GKE--YTPEEISAFILQKLKKDAEAYLGEKVTKAVITVPAYFNDSQRQATKDAG 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDlpnaEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd10234  154 KIAGLEVLRIINEPTAAALAYGLDKKK----DEK--ILVY-DLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTD--LPlniecFMNdKDVSG------KMNRSQFEELCA 311
Cdd:cd10234  227 IDYLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIeLSSVLETEinLP-----FIT-ADASGpkhlemKLTRAKFEELTE 300
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114145505 312 ELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384
Cdd:cd10234  301 DLVERTIEPVEQALKDAKLSPSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLA 373
ASKHA_NBD_HSP70_HSPA9 cd11733
nucleotide-binding domain (NBD) of human mitochondrial heat shock 70 kDa protein 9 (HSPA9) and ...
3-383 2.40e-86

nucleotide-binding domain (NBD) of human mitochondrial heat shock 70 kDa protein 9 (HSPA9) and similar proteins; This subgroup includes human mitochondrial HSPA9 (also known as mitochondrial stress-70 protein; mortalin; 75 kDa glucose-regulated protein/GRP-75; HSPA9B; MOT; peptide-binding protein 74/PBP74). It acts as a chaperone protein which plays an important role in mitochondrial iron-sulfur cluster (ISC) biogenesis. It interacts with and stabilizes ISC cluster assembly proteins FXN, NFU1, NFS1 and ISCU. HSPA9 regulates erythropoiesis via stabilization of ISC assembly. It may play a role in the control of cell proliferation and cellular aging. Members in this subgroup belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs).


Pssm-ID: 466839 [Multi-domain]  Cd Length: 377  Bit Score: 279.92  E-value: 2.40e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGS-QSCyIAVARAGGIETIANEFSDRCTPSVISFGSKN-RTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:cd11733    3 VIGIDLGTtNSC-VAVMEGKTPKVIENAEGARTTPSVVAFTADGeRLVGMPAKRQAVTNPENTLYATKRLIGRRFDDPEV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKENLSYDLVPMKNGGVGIKVmymdEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd11733   82 QKDIKMVPYKIVKASNGDAWVEA----HGKKYSPSQIGAFVLTKMKETAESYLGRPVKNAVITVPAYFNDSQRQATKDAG 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDlpnaeekPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd11733  158 QIAGLNVLRIINEPTAAALAYGLDKKD-------DKIIAVYDLGGGTFDISILEIQKGVFEVKATNGDTFLGGEDFDNAL 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLK-KLMSSNSTD--LPlniecFMNdKDVSG------KMNRSQFEELCA 311
Cdd:cd11733  231 LNYLVAEFKKEQGIDLSKDNLALQRLREAAEKAKiELSSSLQTDinLP-----FIT-ADASGpkhlnmKLTRAKFESLVG 304
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 114145505 312 ELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd11733  305 DLIKRTVEPCKKCLKDAGVSKSDIGEVLLVGGMTRMPKVQETVQEIFGKAPSKGVNPDEAVAMGAAIQGGVL 376
PRK13411 PRK13411
molecular chaperone DnaK; Provisional
3-568 4.33e-84

molecular chaperone DnaK; Provisional


Pssm-ID: 184039 [Multi-domain]  Cd Length: 653  Bit Score: 282.41  E-value: 4.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKN-RTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:PRK13411   4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGdRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDD--TE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVmymdEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:PRK13411  82 EERSRVPYTCVKGRDDTVNVQI----RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDlpnaeEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:PRK13411 158 IAGLEVLRIINEPTAAALAYGLDKQD-----QEQLILVF-DLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIV 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSS---NSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:PRK13411 232 DWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSmltTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATI 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILSPafKVREFSVTDA 397
Cdd:PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFgGKQPDRSVNPDEAVALGAAIQAGVLGG--EVKDLLLLDV 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 398 VPFPISLvwnhdseETEGvhEVFS----RNHAAPFSKVLTF--------------------LRR-----GPFELEAFYSD 448
Cdd:PRK13411 390 TPLSLGI-------ETLG--EVFTkiieRNTTIPTSKSQVFstatdgqtsveihvlqgeraMAKdnkslGKFLLTGIPPA 460
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 449 PQGVPYPEA--KIGRFVVQNVSAQKDGEKSRVKVKVrVNTHGIftisTASMVEKVPTE-----EEDGSSLEAdMECPNQR 521
Cdd:PRK13411 461 PRGVPQIEVsfEIDVNGILKVSAQDQGTGREQSIRI-TNTGGL----SSNEIERMRQEaekyaEEDRRRKQL-IELKNQA 534
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|
gi 114145505 522 PTESSDVDKNIqQDNSEAGTQPQVQTDGQQTSQ---SPPSPELTSEESKT 568
Cdd:PRK13411 535 DSLLYSYESTL-KENGELISEELKQRAEQKVEQleaALTDPNISLEELKQ 583
ASKHA_NBD_HSP70_DnaK_HscA_HscC cd24029
nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and ...
4-384 1.64e-81

nucleotide-binding domain (NBD) of Escherichia coli chaperone proteins DnaK, HscA, HscC and similar proteins; Escherichia coli DnaK, also called heat shock 70 kDa protein/HSP70, plays an essential role in the initiation of phage lambda DNA replication, where it acts in an ATP-dependent fashion with the DnaJ protein to release lambda O and P proteins from the preprimosomal complex. DnaK is also involved in chromosomal DNA replication, possibly through an analogous interaction with the DnaA protein. Moreover, DnaK participates actively in the response to hyperosmotic shock. Escherichia coli HscA, also called Hsc66, acts as a chaperone involved in the maturation of iron-sulfur cluster-containing proteins. It has a low intrinsic ATPase activity which is markedly stimulated by HscB. It is involved in the maturation of IscU. Escherichia coli HscC, also called Hsc62, or YbeW, may act as the chaperone. It has ATPase activity. It cannot be stimulated by DnaJ. The family also includes Saccharomyces cerevisiae stress-seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and Ssc3p (also called extracellular mutant protein 10/Ecm10), and Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p; Ssh1p; mtHSP70 homolog). They all belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively.


Pssm-ID: 466879 [Multi-domain]  Cd Length: 351  Bit Score: 265.98  E-value: 1.64e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVG-SQSCyIAVARAGGIETIANEFSDRC-TPSVISFGSKNRTI-GVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:cd24029    1 VGIDLGtTNSA-VAYWDGNGAEVIIENSEGKRtTPSVVYFDKDGEVLvGEEAKNQALLDPENTIYSVKRLMGRDTKDKEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKEnlsydlvpmknggvgikvmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd24029   80 IGGKE--------------------------YTPEEISAEILKKLKEDAEEQLGGEVKGAVITVPAYFNDKQRKATKKAA 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDlpnaeEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd24029  134 ELAGLNVLRLINEPTAAALAYGLDKEG-----KDGTILVY-DLGGGTFDVSILEIENGKFEVLATGGDNFLGGDDFDEAI 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFK-TKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTDLPLNIEcfMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:cd24029  208 AELILEKIGiETGILDDKEDERARARLREAAEEAKIeLSSSDSTDILILDD--GKGGELEIEITREEFEELIAPLIERTI 285
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384
Cdd:cd24029  286 DLLEKALKDAKLSPEDIDRVLLVGGSSRIPLVREMLEEYFGREPISSVDPDEAVAKGAAIYAASLA 351
PTZ00009 PTZ00009
heat shock 70 kDa protein; Provisional
4-482 5.51e-81

heat shock 70 kDa protein; Provisional


Pssm-ID: 240227 [Multi-domain]  Cd Length: 653  Bit Score: 273.98  E-value: 5.51e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQKE 83
Cdd:PTZ00009   7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 163
Cdd:PTZ00009  87 MKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 164 GLNCLRLMNDMTAVALNYGIYKQDlpnaeEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEH 243
Cdd:PTZ00009 167 GLNVLRIINEPTAAAIAYGLDKKG-----DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 244 FCAEFKTKYK-LDAKSKIRALLRLHQECEKLKKLMSSnSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPLH 322
Cdd:PTZ00009 242 CVQDFKRKNRgKDLSSNQRALRRLRTQCERAKRTLSS-STQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 323 SLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS--PAFKVREFSVTDAVP 399
Cdd:PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFnGKEPCKSINPDEAVAYGAAVQAAILTgeQSSQVQDLLLLDVTP 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 400 FPISLvwnhdseETEG--VHEVFSRNHAAPFSKVLTFLRR-------------------------GPFELEAFYSDPQGV 452
Cdd:PTZ00009 401 LSLGL-------ETAGgvMTKLIERNTTIPTKKSQIFTTYadnqpgvliqvfegeramtkdnnllGKFHLDGIPPAPRGV 473
                        490       500       510
                 ....*....|....*....|....*....|..
gi 114145505 453 PYPEAK--IGRFVVQNVSAQKDGEKSRVKVKV 482
Cdd:PTZ00009 474 PQIEVTfdIDANGILNVSAEDKSTGKSNKITI 505
dnaK PRK00290
molecular chaperone DnaK; Provisional
1-384 1.46e-80

molecular chaperone DnaK; Provisional


Pssm-ID: 234715 [Multi-domain]  Cd Length: 627  Bit Score: 272.36  E-value: 1.46e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   1 MS-VVGLDVG-SQSCyIAVARAGGIETIANEFSDRCTPSVISFgSKN--RTIGVAAKNQQITHANNTVSSFKRFHGRafN 76
Cdd:PRK00290   1 MGkIIGIDLGtTNSC-VAVMEGGEPKVIENAEGARTTPSVVAF-TKDgeRLVGQPAKRQAVTNPENTIFSIKRLMGR--R 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  77 DPFIQKEKENLSYDLVPMKNGGVGIKVMymDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSV 156
Cdd:PRK00290  77 DEEVQKDIKLVPYKIVKADNGDAWVEID--GKK--YTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQAT 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 157 LDAAQIVGLNCLRLMNDMTAVALNYGIYKQDlpnaEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNF 236
Cdd:PRK00290 153 KDAGKIAGLEVLRIINEPTAAALAYGLDKKG----DEK--ILVY-DLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDF 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 237 DEKLVEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKK-LMSSNSTD--LP-----------LNIecfmndkdvsgKMN 302
Cdd:PRK00290 226 DQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIeLSSAQQTEinLPfitadasgpkhLEI-----------KLT 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 303 RSQFEELCAELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAI 382
Cdd:PRK00290 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGV 374

                 ..
gi 114145505 383 LS 384
Cdd:PRK00290 375 LA 376
ASKHA_NBD_HSP70_Ssc1_3 cd11734
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae mitochondrial heat shock protein ...
2-384 2.17e-79

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae mitochondrial heat shock protein Ssc1p and Ssc3p and similar proteins; This subgroup includes Saccharomyces cerevisiae Stress-Seventy subfamily C proteins, Ssc1p (also called import motor subunit, mitochondrial; endonuclease SceI 75 kDa subunit; mtHSP70; ENS1; endonuclease SceI 75 kDa subunit) and sc3p (also called extracellular mutant protein 10/Ecm10). Ssc1p is an essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. It constitutes the ATP-driven core of the motor and binds the precursor preprotein. It is required for the import of the processed frataxin homolog YFH1 into the mitochondrion. Ssc1p also acts as a non-catalytic component of endonuclease SceI (endo.SceI), which cleaves specifically at multiple sites on mitochondrial DNA and produces double-stranded breaks. Ssc1p confers broader sequence specificity, greater stability, and higher activity on the catalytic subunit. Ssc3p plays a role in facilitating the assembly of some protein complexes inside the mitochondria. It may initiate the events that lead to refolding of imported precursors in the matrix space.


Pssm-ID: 466840 [Multi-domain]  Cd Length: 378  Bit Score: 261.23  E-value: 2.17e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKN-RTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI 80
Cdd:cd11734    2 PVIGIDLGTTNSCVAVMEGKTPRVIENAEGARTTPSVVAFTKDGeRLVGVPAKRQAVVNPENTLFATKRLIGRKFDDAEV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  81 QKEKENLSYDLVPMKNGGVGIKVMYMDeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA 160
Cdd:cd11734   82 QRDIKEVPYKIVKHSNGDAWVEARGQK----YSPSQIGAFVLGKMKETAEGYLGKPVKNAVVTVPAYFNDSQRQATKDAG 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 161 QIVGLNCLRLMNDMTAVALNYGIYKQDlpnaeekPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL 240
Cdd:cd11734  158 QIAGLNVLRVINEPTAAALAYGLDKSG-------DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTHLGGEDFDIAL 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 241 VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLK-KLMSSNSTD--LPLNIECFMNDKDVSGKMNRSQFEELCAELLQKI 317
Cdd:cd11734  231 VRHIVSEFKKESGIDLSKDRMAIQRIREAAEKAKiELSSTLQTDinLPFITADASGPKHINMKLTRAQFESLVKPLVDRT 310
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114145505 318 EVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384
Cdd:cd11734  311 VEPCKKALKDAGVKTSEINEVILVGGMSRMPKVQETVKSIFGREPSKGVNPDEAVAIGAAIQGGVLS 377
ASKHA_NBD_HSP70_HscA cd10236
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscA and similar ...
3-384 1.04e-76

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscA and similar proteins; Escherichia coli HscA, also called Hsc66, acts as a chaperone involved in the maturation of iron-sulfur cluster-containing proteins. It has a low intrinsic ATPase activity which is markedly stimulated by HscB. It is involved in the maturation of IscU. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly.


Pssm-ID: 466834 [Multi-domain]  Cd Length: 367  Bit Score: 253.68  E-value: 1.04e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNR-TIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:cd10236    4 AVGIDLGTTNSLVATVRSGQPEVLPDEKGEALLPSVVHYGEDGKiTVGEKAKENAITDPENTISSVKRLMGRSLAD--VK 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVmymdEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd10236   82 EELPLLPYRLVGDENELPRFRT----GAGNLTPVEISAEILKELKQRAEETLGGELTGAVITVPAYFDDAQRQATKDAAR 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKqdlpnaeEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd10236  158 LAGLNVLRLLNEPTAAALAYGLDQ-------KKEGTIAVYDLGGGTFDISILRLSDGVFEVLATGGDTALGGDDFDHLLA 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDaKSKIRALLrlhQECEKLKKLMS-SNSTDLPLNIECFmndkDVSGKMNRSQFEELCAELLQKIEVP 320
Cdd:cd10236  231 DWILKQIGIDARLD-PAVQQALL---QAARRAKEALSdADSASIEVEVEGK----DWEREITREEFEELIQPLVKRTLEP 302
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 114145505 321 LHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 384
Cdd:cd10236  303 CRRALKDAGLEPADIDEVVLVGGSTRIPLVRQRVAEFFGREPLTSINPDEVVALGAAIQADILA 366
ASKHA_NBD_HSP70_HSPA14 cd10238
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 14 (HSPA14) and similar proteins; ...
2-383 5.14e-76

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 14 (HSPA14) and similar proteins; HSPA14, also called HSP70-like protein 1 (Hsp70L1), or heat shock protein HSP60, is a component of the ribosome-associated complex (RAC), a complex involved in folding or maintaining nascent polypeptides in a folding-competent state. In the RAC complex, HSPA14 binds to the nascent polypeptide chain, while DNAJC2 stimulates its ATPase activity. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis.


Pssm-ID: 466836 [Multi-domain]  Cd Length: 377  Bit Score: 252.16  E-value: 5.14e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   2 SVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:cd10238    1 AAFGVHFGNTNACVAVYKDGRTDVVANDAGDRVTPAVVAFTDNEKIVGLAAKQGLIRNASNTVVRVKQLLGRSFDDPAVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVpMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd10238   81 ELKKESKCKII-EKDGKPGYEIELEEKKKLVSPKEVAKLIFKKMKEIAQSHGGSDVIDVVLTVPLDFDEDQRNALKEAAE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDLpnaEEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd10238  160 KAGFNVLRVISEPSAAALAYGIGQDDP---TENSNVLVY-RLGGTSLDVTVLSVNNGMYRVLATRTDDNLGGDDFTEALA 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDlPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd10238  236 EHLASEFKRQWKQDVRENKRAMAKLMNAAEVCKHVLSTLNTA-TCSVESLYDGMDFQCNVSRARFESLCSSLFQQCLEPI 314
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd10238  315 QEVLNSAGLTKEDIDKVILCGGSSRIPKLQQLIKDLFpSAEVLSSIPPDEVIAIGAAKQAGLL 377
PTZ00400 PTZ00400
DnaK-type molecular chaperone; Provisional
3-383 6.16e-75

DnaK-type molecular chaperone; Provisional


Pssm-ID: 240403 [Multi-domain]  Cd Length: 663  Bit Score: 257.83  E-value: 6.16e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKN-RTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQ 81
Cdd:PTZ00400  43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGqRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATK 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVmymdEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:PTZ00400 123 KEQKILPYKIVRASNGDAWIEA----QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGK 198
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDlpnaeekPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:PTZ00400 199 IAGLDVLRIINEPTAAALAFGMDKND-------GKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNS---TDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTqteINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAIL 383
Cdd:PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416
ASKHA_NBD_HSP70_HscC cd10235
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscC and similar ...
4-382 1.74e-73

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscC and similar proteins; Escherichia coli HscC, also called Hsc62, or YbeW, may act as the chaperone. It has ATPase activity. It cannot be stimulated by DnaJ. Members in this subfamily belong to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF.


Pssm-ID: 466833 [Multi-domain]  Cd Length: 343  Bit Score: 244.46  E-value: 1.74e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANNTVSSFKRFHGRAFNdpfiqk 82
Cdd:cd10235    1 IGIDLGTTNSLVAVWRDGGAELIPNALGEYLTPSVVSVDEDGSIlVGRAAKERLVTHPDRTAASFKRFMGTDKQ------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  83 ekenlsYDLvpmknGGvgikvmymdeeHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:cd10235   75 ------YRL-----GN-----------HTFRAEELSALVLKSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKDAGEL 132
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 163 VGLNCLRLMNDMTAVALNYGIYKQdlpnaEEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:cd10235  133 AGLKVERLINEPTAAALAYGLHKR-----EDETRFLVF-DLGGGTFDVSVLELFEGVIEVHASAGDNFLGGEDFTHALAD 206
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 243 HFCAEFKTKYKLDAKSKiraLLRLHQECEKLK-KLMSSNSTDLPLNIecfmNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd10235  207 YFLKKHRLDFTSLSPSE---LAALRKRAEQAKrQLSSQDSAEIRLTY----RGEELEIELTREEFEELCAPLLERLRQPI 279
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAI 382
Cdd:cd10235  280 ERALRDAGLKPSDIDAVILVGGATRMPLVRQLIARLFGRLPLSSLDPDEAVALGAAIQAAL 340
ASKHA_NBD_HSP70_HSPA13 cd10237
nucleotide-binding domain (NBD) of heat shock 70 kDa protein 13 (HSPA13) and similar proteins; ...
3-383 1.05e-72

nucleotide-binding domain (NBD) of heat shock 70 kDa protein 13 (HSPA13) and similar proteins; HSPA13, also called 70-kDa heat shock protein 13, STCH, microsomal stress-70 protein ATPase core, or stress-70 protein chaperone microsome-associated 60 kDa protein, has peptide-independent ATPase activity. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA13 contains an NBD but lacks an SBD. It may function to regulate cell proliferation and survival and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187.


Pssm-ID: 466835 [Multi-domain]  Cd Length: 409  Bit Score: 244.56  E-value: 1.05e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAV--ARAGGIETIANEFSDRCTPSVISF-GSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPF 79
Cdd:cd10237   24 IVGIDLGTTYSCVGVyhAVTGEVEVIPDDDGHKSIPSVVAFtPDGGVLVGYDALAQAEHNPSNTIYDAKRFIGKTFTKEE 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  80 IQKEKENLSYDLVPMKNGGVGIKVMYMDEEHFFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDA 159
Cdd:cd10237  104 LEEEAKRYPFKVVNDNIGSAFFEVPLNGSTLVVSPEDIGSLILLKLKKAAEAYLGVPVAKAVISVPAEFDEKQRNATRKA 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 160 AQIVGLNCLRLMNDMTAVALNYGIYKQDLPNAeekprvVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEK 239
Cdd:cd10237  184 ANLAGLEVLRVINEPTAAAMAYGLHKKSDVNN------VLVVDLGGGTLDVSLLNVQGGMFLTRAMAGNNHLGGQDFNQR 257
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 240 LVEHFCAEFKTKYKLDAKSKiRALLRLHQECEKLK-KLMSSNSTDLPLNIECFMNDKD-VSGKMN--RSQFEELCAELLQ 315
Cdd:cd10237  258 LFQYLIDRIAKKFGKTLTDK-EDIQRLRQAVEEVKlNLTNHNSASLSLPLQISLPSAFkVKFKEEitRDLFETLNEDLFQ 336
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 114145505 316 KIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAIL 383
Cdd:cd10237  337 RVLEPIRQVLAEVELGKEDVDEIVLVGGSTRIPRVRQLVREFFGKDPNTSVDPELAVVTGVAIQAGII 404
dnaK CHL00094
heat shock protein 70
3-434 6.14e-72

heat shock protein 70


Pssm-ID: 214360 [Multi-domain]  Cd Length: 621  Bit Score: 248.49  E-value: 6.14e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSK-NRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:CHL00094   4 VVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKgDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--IS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:CHL00094  82 EEAKQVSYKVKTDSNGNIKIECPALNKD--FSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGK 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQDlpnaEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKN----NET--ILVF-DLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSS---NSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNltqTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILspAFKVREFSVTDAV 398
Cdd:CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL--AGEVKDILLLDVT 390
                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 114145505 399 PFPISLvwnhdseETEG--VHEVFSRNHAAPFSKVLTF 434
Cdd:CHL00094 391 PLSLGV-------ETLGgvMTKIIPRNTTIPTKKSEVF 421
ASKHA_NBD_HSP70_ScSsz1p-like cd10232
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae ribosome-associated complex ...
3-383 2.11e-70

nucleotide-binding domain (NBD) of Saccharomyces cerevisiae ribosome-associated complex subunit Ssz1 and similar proteins; Ssz1, also called DnaK-related protein Ssz1, heat shock protein 70 homolog Ssz1, or pleiotropic drug resistance protein 13 (PDR13), is a component of the ribosome-associated complex (RAC), a heterodimeric chaperone complex involved in regulation of accurate translation termination and in folding or maintaining nascent polypeptides in a folding-competent state. RAC stimulates the ATPase activity of the ribosome-associated pool of Hsp70-type chaperones Ssb1/Ssb2 that bind to the nascent polypeptide chain. Ssz1 is required for Zuo1 to function efficiently as a J-protein for Ssb1/Ssb2. It is also involved in pleiotropic drug resistance by post-translational activation of transcription factor PDR1. Members in this subfamily belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis.


Pssm-ID: 466830 [Multi-domain]  Cd Length: 349  Bit Score: 236.10  E-value: 2.11e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGG-IETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFhgrafndpfiq 81
Cdd:cd10232    2 VIGISFGNSNSSIAIINKDGrAEVIANEDGDRQIPSILAYHGDEEYHGSQAKAQLVRNPKNTVANFRDL----------- 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 kekenlsydlvpmknggVGIKVmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:cd10232   71 -----------------LGTTT--------LTVSEVTTRYLRRLKESAEDYLGKKVTGAVLSVPTDFTEKQKAALVAAAA 125
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGiYKQDLPNAEEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:cd10232  126 AAGLEVLQLIPEPAAAALAYD-LRAETSGDTIKDKTVVVADLGGTRSDVTVVAVRGGLYTILATVHDYELGGVALDDVLV 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKlMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIEVPL 321
Cdd:cd10232  205 GHFAKEFKKKTKTDPRKNARSLAKLRNAAEITKR-ALSQGTSAPCSVESLADGIDFHSSINRTRYELLASKVFQQFADLV 283
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114145505 322 HSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDV----STTLNADEAVARGCALQCAIL 383
Cdd:cd10232  284 TDAIEKAGLDPLDIDEVLLAGGASRTPKLASNFEYLFPESTiiraPTQINPDELIARGAALQASLI 349
PRK13410 PRK13410
molecular chaperone DnaK; Provisional
3-404 2.38e-68

molecular chaperone DnaK; Provisional


Pssm-ID: 184038 [Multi-domain]  Cd Length: 668  Bit Score: 239.91  E-value: 2.38e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFG-SKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:PRK13410   4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTkDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--LD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:PRK13410  82 PESKRVPYTIRRNEQGNVRIKCPRLERE--FAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQdlpnaeEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:PRK13410 160 IAGLEVERILNEPTAAALAYGLDRS------SSQTVLVF-DLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSS-NSTDL-----------PLNIECfmndkdvsgKMNRSQFEEL 309
Cdd:PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGvSVTDIslpfitatedgPKHIET---------RLDRKQFESL 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 310 CAELLQKIEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILspAFKV 389
Cdd:PRK13410 304 CGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL--AGEL 381
                        410
                 ....*....|....*
gi 114145505 390 REFSVTDAVPFPISL 404
Cdd:PRK13410 382 KDLLLLDVTPLSLGL 396
PLN03184 PLN03184
chloroplast Hsp70; Provisional
3-458 3.40e-68

chloroplast Hsp70; Provisional


Pssm-ID: 215618 [Multi-domain]  Cd Length: 673  Bit Score: 239.37  E-value: 3.40e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFG-SKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQ 81
Cdd:PLN03184  41 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTkNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VD 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  82 KEKENLSYDLVPMKNGGVGIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQ 161
Cdd:PLN03184 119 EESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 162 IVGLNCLRLMNDMTAVALNYGIYKQdlpnAEEKprVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 241
Cdd:PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKK----SNET--ILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 242 EHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSS---NSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELLQKIE 318
Cdd:PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSltqTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILspAFKVREFSVTDAV 398
Cdd:PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVL--AGEVSDIVLLDVT 427
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 399 PFPISLvwnhdseETEG--VHEVFSRNHAAPFSK-----------------VLT----FLRR----GPFELEAFYSDPQG 451
Cdd:PLN03184 428 PLSLGL-------ETLGgvMTKIIPRNTTLPTSKsevfstaadgqtsveinVLQgereFVRDnkslGSFRLDGIPPAPRG 500

                 ....*..
gi 114145505 452 VPYPEAK 458
Cdd:PLN03184 501 VPQIEVK 507
PTZ00186 PTZ00186
heat shock 70 kDa precursor protein; Provisional
3-587 4.88e-67

heat shock 70 kDa precursor protein; Provisional


Pssm-ID: 140213 [Multi-domain]  Cd Length: 657  Bit Score: 236.12  E-value: 4.88e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:PTZ00186  29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQK 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  83 EKENLSYDLVPMKNGGVGIKVMYMDEehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:PTZ00186 109 DIKNVPYKIVRAGNGDAWVQDGNGKQ---YSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 163 VGLNCLRLMNDMTAVALNYGIYKQdlpnaeeKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKT-------KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 243 HFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSnSTDLPLNIECFMNDKD----VSGKMNRSQFEELCAELLQKIE 318
Cdd:PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSS-AMETEVNLPFITANADgaqhIQMHISRSKFEGITQRLIERSI 337
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 319 VPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILSPafKVREFSVTDAV 398
Cdd:PTZ00186 338 APCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVT 415
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 399 PFPISlvwnhdseeTEGVHEVFSR----NHAAPFSKVLTFLR-------------------------RGPFELEAFYSDP 449
Cdd:PTZ00186 416 PLSLG---------IETLGGVFTRmipkNTTIPTKKSQTFSTaadnqtqvgikvfqgeremaadnqmMGQFDLVGIPPAP 486
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 450 QGVPYPEAKI-----------------GRfvVQNVSAQKDG------------------EKSRVK---VKVRVNTHGIFT 491
Cdd:PTZ00186 487 RGVPQIEVTFdidangichvtakdkatGK--TQNITITANGglskeqieqmirdseqhaEADRVKrelVEVRNNAETQLT 564
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 492 ISTASMVE---KVPTEEEDGSSLEAD----MECPNQRPTESSDVDKNIQQDNSEAGtqpqvQTDGQQTSQSPpspelTSE 564
Cdd:PTZ00186 565 TAERQLGEwkyVSDAEKENVKTLVAElrkaMENPNVAKDDLAAATDKLQKAVMECG-----RTEYQQAAAAN-----SGS 634
                        650       660
                 ....*....|....*....|...
gi 114145505 565 ESKTPDADKANEKKVDQPPEAKK 587
Cdd:PTZ00186 635 SSNSGEQQQQQQQQQQQNSEEKK 657
hscA PRK05183
chaperone protein HscA; Provisional
4-383 3.58e-64

chaperone protein HscA; Provisional


Pssm-ID: 235360 [Multi-domain]  Cd Length: 616  Bit Score: 226.98  E-value: 3.58e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDpfIQKE 83
Cdd:PRK05183  22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQR 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  84 KENLSYDLVPMKNGGV------GIKvmymdeehffSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVL 157
Cdd:PRK05183 100 YPHLPYQFVASENGMPlirtaqGLK----------SPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATK 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 158 DAAQIVGLNCLRLMNDMTAVALNYGiykqdLPNAEEkpRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFD 237
Cdd:PRK05183 170 DAARLAGLNVLRLLNEPTAAAIAYG-----LDSGQE--GVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFD 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 238 EKLVEHFCAEFKTKYKLDAKSKiRALLRLHQEC-EKLkklmsSNSTDLPLNIEcfmndkDVSGKMNRSQFEELCAELLQK 316
Cdd:PRK05183 243 HLLADWILEQAGLSPRLDPEDQ-RLLLDAARAAkEAL-----SDADSVEVSVA------LWQGEITREQFNALIAPLVKR 310
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 114145505 317 IEVPLHSLMAQTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAIL 383
Cdd:PRK05183 311 TLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADIL 377
hscA PRK01433
chaperone protein HscA; Provisional
3-379 1.13e-35

chaperone protein HscA; Provisional


Pssm-ID: 234955 [Multi-domain]  Cd Length: 595  Bit Score: 143.84  E-value: 1.13e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGSKNRTIGvaaknqqithANNTVSSFKRFHGRAFNDPFIQK 82
Cdd:PRK01433  21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIG----------NNKGLRSIKRLFGKTLKEILNTP 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  83 EKENLSYDLVpMKNGGVgIKVMYMDEEhfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQI 162
Cdd:PRK01433  91 ALFSLVKDYL-DVNSSE-LKLNFANKQ--LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKI 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 163 VGLNCLRLMNDMTAVALNYGIykqdlpNAEEKPRVVVFvDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 242
Cdd:PRK01433 167 AGFEVLRLIAEPTAAAYAYGL------NKNQKGCYLVY-DLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 243 HFCAefktkyKLDAKSKIRALlrlhQECEKLKKLMSSNstdlplniECFMNDKdVSgkMNRSQFEELCAELLQK-IEVPL 321
Cdd:PRK01433 240 YLCN------KFDLPNSIDTL----QLAKKAKETLTYK--------DSFNNDN-IS--INKQTLEQLILPLVERtINIAQ 298
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 114145505 322 HSLmaqTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQ 379
Cdd:PRK01433 299 ECL---EQAGNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQ 353
ASKHA_NBD_HSP70 cd10170
nucleotide-binding domain (NBD) of the HSP70 family; HSP70 (70-kDa heat shock protein) family ...
116-378 1.55e-33

nucleotide-binding domain (NBD) of the HSP70 family; HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. The HSP70 family belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466811 [Multi-domain]  Cd Length: 329  Bit Score: 131.84  E-value: 1.55e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 116 QITAMLLTKLKETAENNLK-------KPVTDCVISVPSFFTDAERRSVLDAAQIVGL----NCLRLMNDMTAVALNYGIY 184
Cdd:cd10170   46 EVVADFLRALLEHAKAELGdriweleKAPIEVVITVPAGWSDAAREALREAARAAGFgsdsDNVRLVSEPEAAALYALED 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 185 KQDLPNAEEKPRVVVfVDMGHSSFQVSACAFNKGK---LKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIR 261
Cdd:cd10170  126 KGDLLPLKPGDVVLV-CDAGGGTVDLSLYEVTSGSpllLEEVAPGGGALLGGTDIDEAFEKLLREKLGDKGKDLGRSDAD 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 262 ALLRLHQECEKLKKLMSSNSTDLPLNIECFMND--KDVSGKMNRSQFEELCAELLQKIEVPLHSLMAQ--TQLKAEDVSA 337
Cdd:cd10170  205 ALAKLLREFEEAKKRFSGGEEDERLVPSLLGGGlpELGLEKGTLLLTEEEIRDLFDPVIDKILELIEEqlEAKSGTPPDA 284
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 114145505 338 IEIVGGATRIPAVKERIAKFFGKDVSTTL----NADEAVARGCAL 378
Cdd:cd10170  285 VVLVGGFSRSPYLRERLRERFGSAGIIIVlrsdDPDTAVARGAAL 329
ASKHA_NBD_HSP70_YegD-like cd10231
nucleotide-binding domain (NBD) of Escherichia coli chaperone protein YegD and similar ...
4-378 1.23e-16

nucleotide-binding domain (NBD) of Escherichia coli chaperone protein YegD and similar proteins; The family includes a group of uncharacterized proteins similar to Escherichia coli chaperone protein YegD that belongs to the heat shock protein 70 family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.


Pssm-ID: 466829 [Multi-domain]  Cd Length: 409  Bit Score: 83.09  E-value: 1.23e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISF------GSKNRTIGVAAKNQQITHANNT--VSSFKRFHGRAF 75
Cdd:cd10231    1 IGLDFGTSNSSLAVADDGKTDLVPFEGDSPTLPSLLYFprreeeGAESIYFGNDAIDAYLNDPEEGrlIKSVKSFLGSSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  76 NDPFIQKEKEnlsydlvpmknggvgikvmymdeehfFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTD----- 150
Cdd:cd10231   81 FDETTIFGRR--------------------------YPFEDLVAAILRHLKRRAERQLGEEIDSVVVGRPVHFSGvgaed 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 151 ---AERRsVLDAAQIVGLNCLRLMNDMTAVALNYgiyKQDLPnaeeKPRVVVFVDMGHSSFQVSACAFN----KGKLKVL 223
Cdd:cd10231  135 daqAESR-LRDAARRAGFRNVEFQYEPIAAALDY---EQRLD----REELVLVVDFGGGTSDFSVLRLGpnrtDRRADIL 206
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 224 GTAFDpFLGGKNFDEKLVE-----HF----------------------------CAEFKTKYKLDAKS----------KI 260
Cdd:cd10231  207 ATSGV-GIGGDDFDRELALkkvmpHLgrgstyvsgdkglpvpawlyadlsnwhaISLLYTKKTLRLLLdlrrdaadpeKI 285
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 261 RALL---------RLHQECEKLK-KLMSSNSTDLPLNiecFMN---DKDVSgkmnRSQFEELCAELLQKIEVPLHSLMAQ 327
Cdd:cd10231  286 ERLLslvedqlghRLFRAVEQAKiALSSADEATLSFD---FIEisiKVTIT----RDEFETAIAFPLARILEALERTLND 358
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|.
gi 114145505 328 TQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCAL 378
Cdd:cd10231  359 AGVKPSDVDRVFLTGGSSQSPAVRQALASLFGQARLVEGDEFGSVAAGLAL 409
ASKHA_NBD_MreB-like cd10225
nucleotide-binding domain (NBD) of the cell shape-determining proteins MreB, Mbl, MreBH and ...
4-377 2.06e-07

nucleotide-binding domain (NBD) of the cell shape-determining proteins MreB, Mbl, MreBH and similar proteins; MreB proteins are bacterial actin homologs that may play a role in cell shape determination by positioning the cell wall synthetic machinery. MreB has also been implicated in chromosome segregation; specifically, MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. The family includes three MreB isoforms, MreB (also called actin-like MreB protein or rod shape-determining protein MreB), Mbl (also called actin-like Mbl protein or rod shape-determining protein Mbl) and MreBH (also called actin-like MreBH protein or rod shape-determining protein MreBH), in cell morphogenesis of Bacillus subtilis. All isoforms can support rod-shaped cell growth normal conditions. They form membrane-associated dynamic filaments that are essential for cell shape determination. They act by regulating cell wall synthesis and cell elongation, and thus cell shape. The feedback loops between cell geometry and their localizations may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature. Filaments rotate around the cell circumference in concert with the cell wall synthesis enzymes. The process is driven by the cell wall synthesis machinery and does not depend on their polymerization. They organize peptidoglycan synthesis in the lateral cell wall. MreB, Mbl and MreBH can form a complex. The MreB-like family belongs to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466824 [Multi-domain]  Cd Length: 317  Bit Score: 53.63  E-value: 2.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   4 VGLDVGSQSCYIAVARAGgieTIANEfsdrctPSVISFgsKNRT-----IGVAAKnqqithanntvssfkRFHGRAfndP 78
Cdd:cd10225    2 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAV--DKNTgkvlaVGEEAK---------------KMLGRT---P 52
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  79 -FIQKEKenlsydlvPMKNGGVGikvmymDEEhffsveqITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVL 157
Cdd:cd10225   53 gNIVAIR--------PLRDGVIA------DFE-------ATEAMLRYFIRKAHRRRGFLRPRVVIGVPSGITEVERRAVK 111
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 158 DAAQIVGLNCLRLMNDMTAVALNYGiykqdLPNAEekPRVVVFVDMGHSSFQVSACAFnkGKLkVLGTAFDpfLGGKNFD 237
Cdd:cd10225  112 EAAEHAGAREVYLIEEPMAAAIGAG-----LPIEE--PRGSMVVDIGGGTTEIAVISL--GGI-VTSRSVR--VAGDEMD 179
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 238 EKLVEHfcaeFKTKYKLDAKskirallrlHQECEKLKKLMSS-NSTDLPLNIEcfmndkdVSGK-----------MNRSQ 305
Cdd:cd10225  180 EAIINY----VRRKYNLLIG---------ERTAERIKIEIGSaYPLDEELSME-------VRGRdlvtglprtieITSEE 239
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 114145505 306 FEELCAELLQKIEVPLHSLMAQT--QLkAEDVSA--IEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCA 377
Cdd:cd10225  240 VREALEEPVNAIVEAVRSTLERTppEL-AADIVDrgIVLTGGGALLRGLDELLREETGLPVHVADDPLTCVAKGAG 314
ASKHA_NBD_PilM-like cd24004
nucleotide-binding domain (NBD) of the PilM-like domain family; The PilM-like family includes ...
119-363 5.67e-07

nucleotide-binding domain (NBD) of the PilM-like domain family; The PilM-like family includes type IV pilus inner membrane component PilM, cell division protein FtsA, and ethanolamine utilization protein EutJ. PilM is an inner membrane component of the type IV (T4S) secretion system that plays a role in surface and host cell adhesion, colonization, biofilm maturation, virulence, and twitching, a form of surface-associated motility. FtsA is an essential cell division protein that assists in the assembly of the Z ring. It may serve as the principal membrane anchor for the Z ring. It is also required for the recruitment to the septal ring of the downstream cell division proteins FtsK, FtsQ, FtsL, FtsI and FtsN. EutJ may protect ethanolamine ammonia-lyase (EAL, eutB-eutC) from inhibition. It may also function in assembling the bacterial microcompartment and/or in refolding EAL, suggesting it may have chaperone activity. Members in PilM-like family belong to the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily of phosphotransferases, all members of which share a common characteristic five-stranded beta sheet occurring in both the N- and C-terminal domains.


Pssm-ID: 466854 [Multi-domain]  Cd Length: 282  Bit Score: 51.91  E-value: 5.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 119 AMLLTKLKETAENNLKKPVTDCVISVPSF---FTDAERRSVLDAAQIVglncLRLMNDMTAVALNygiykqdlpnaEEKP 195
Cdd:cd24004   49 AESIKELLKELEEKLGSKLKDVVIAIAKVvesLLNVLEKAGLEPVGLT----LEPFAAANLLIPY-----------DMRD 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 196 RVVVFVDMGHSSFQVSAcaFNKGKlkVLGTAFDPfLGGKNFDEKLVEHFcaefktkyKLDAKskirallrlhqECEKLKK 275
Cdd:cd24004  114 LNIALVDIGAGTTDIAL--IRNGG--IEAYRMVP-LGGDDFTKAIAEGF--------LISFE-----------EAEKIKR 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 276 LMSSNSTDLPLNIECFMNDKdvsgKMNRSQFEELCAELLQKIEVPLHSLMAQTQLkaedVSAIEIVGGATRIPAVKERIA 355
Cdd:cd24004  170 TYGIFLLIEAKDQLGFTINK----KEVYDIIKPVLEELASGIANAIEEYNGKFKL----PDAVYLVGGGSKLPGLNEALA 241

                 ....*...
gi 114145505 356 KFFGKDVS 363
Cdd:cd24004  242 EKLGLPVE 249
ASKHA_NBD_PilM cd24049
nucleotide-binding domain (NBD) of type IV pilus inner membrane component PilM and similar ...
155-363 1.49e-05

nucleotide-binding domain (NBD) of type IV pilus inner membrane component PilM and similar proteins; PilM is an inner membrane component of the type IV (T4S) secretion system that plays a role in surface and host cell adhesion, colonization, biofilm maturation, virulence, and twitching, a form of surface-associated motility. PilN/PilO heterodimers form the foundation of the inner-membrane PilM/PilN/PilO/PilP complex which plays an essential role in the assembly of a functional T4 pilus. In turn, PilM associates with PilN and facilitates PilM functionally relevant structural changes that differentially impacts PilM binding to PilB, PilT, and PilC.


Pssm-ID: 466899 [Multi-domain]  Cd Length: 339  Bit Score: 48.04  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 155 SVLDAAQIVGLNCLRLmnDMTAVALnYGIYKQDLPNAEEKPrvVVFVDMGHSSFQVSAcaFNKGKLKVlgtAFDPFLGGK 234
Cdd:cd24049  140 SYLELLKEAGLKPVAI--DVESFAL-ARALEYLLPDEEEET--VALLDIGASSTTLVI--VKNGKLLF---TRSIPVGGN 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 235 NFDEKLVEHFcaefktkyKLDAkskirallrlhQECEKLKKLMSSNSTDLPlniecfmNDKDVSGKMNRSQFEELCAELL 314
Cdd:cd24049  210 DITEAIAKAL--------GLSF-----------EEAEELKREYGLLLEGEE-------GELKKVAEALRPVLERLVSEIR 263
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 114145505 315 QkievplhSLMA-QTQLKAEDVSAIEIVGGATRIPAVKERIAKFFGKDVS 363
Cdd:cd24049  264 R-------SLDYyRSQNGGEPIDKIYLTGGGSLLPGLDEYLSERLGIPVE 306
ASKHA_NBD_HSP70_HSPA12 cd10229
nucleotide-binding domain (NBD) of heat shock 70 kDa proteins HSPA12A, HSPA12B and similar ...
3-375 1.46e-04

nucleotide-binding domain (NBD) of heat shock 70 kDa proteins HSPA12A, HSPA12B and similar proteins; The family includes heat shock 70 kDa proteins HSPA12A and HSPA12B. HSPA12A is an adapter protein for SORL1, but not SORT1. It delays SORL1 internalization and affects SORL1 subcellular localization. HSPA12B, predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. Both HSPA12A and HSPA12B belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A and HSPA12B.


Pssm-ID: 466827 [Multi-domain]  Cd Length: 372  Bit Score: 44.96  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505   3 VVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSvISFGSKNRT------------IGVAAKNQQITHANNTVSSFKRF 70
Cdd:cd10229    2 VVAIDFGTTYSGYAYSFITDPGDIHTMYNWWGAPT-GVSSPKTPTclllnpdgefhsFGYEAREKYSDLAEDEEHQWLYF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505  71 hgraFNDPFIQKEKENLSYDLVPMKNGGVGIKVMymdeehffsveQITAMLLTKLKETAENNLKKPVTDC--------VI 142
Cdd:cd10229   81 ----FKFKMMLLSEKELTRDTKVKAVNGKSMPAL-----------EVFAEALRYLKDHALKELRDRSGSSldeddirwVL 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 143 SVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMT--------AVALNYGIYKQDLPNAEEKPRVVVfVDMGHSSFQVSACA 214
Cdd:cd10229  146 TVPAIWSDAAKQFMREAAVKAGLISEENSEQLIialepeaaALYCQKLLAEGEEKELKPGDKYLV-VDCGGGTVDITVHE 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 215 FNK-GKLKVLGTAFDPFLGGKNFDEKLVE--------HFCAEFKTKYKLDakskiraLLRLHQECEKLKKlmssnSTDLp 285
Cdd:cd10229  225 VLEdGKLEELLKASGGPWGSTSVDEEFEElleeifgdDFMEAFKQKYPSD-------YLDLLQAFERKKR-----SFKL- 291
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 286 lniecfmndkdvsgKMNRSQFEELCAELLQKIEVPLHSLMAQTQLKaeDVSAIEIVGGATRIPAVKERIAKFFGKDVSTT 365
Cdd:cd10229  292 --------------RLSPELMKSLFDPVVKKIIEHIKELLEKPELK--GVDYIFLVGGFAESPYLQKAVKEAFSTKVKII 355
                        410
                 ....*....|..
gi 114145505 366 L--NADEAVARG 375
Cdd:cd10229  356 IppEPGLAVVKG 367
PRK13929 PRK13929
rod-share determining protein MreBH; Provisional
117-375 8.76e-04

rod-share determining protein MreBH; Provisional


Pssm-ID: 184403 [Multi-domain]  Cd Length: 335  Bit Score: 42.59  E-value: 8.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 117 ITAMLLTKLKETAENNL----KKPvtDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNygiykQDLPnaE 192
Cdd:PRK13929  76 MTTDLLKQIMKKAGKNIgmtfRKP--NVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIG-----ADLP--V 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 193 EKPRVVVFVDMGHSSFQVSACAFNKgklkvLGTAFDPFLGGKNFDEKLVEHfcaeFKTKYKLDAKSKIRALLRL---HQE 269
Cdd:PRK13929 147 DEPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVSF----VRKKYNLLIGERTAEQVKMeigYAL 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 114145505 270 CEKLKKLMSSNSTD----LPLNIEcfMNDKDVSGKMNrsqfeELCAELLQKIEVPLHSLMAQTQLKAEDVSAIeIVGGAT 345
Cdd:PRK13929 218 IEHEPETMEVRGRDlvtgLPKTIT--LESKEIQGAMR-----ESLLHILEAIRATLEDCPPELSGDIVDRGVI-LTGGGA 289
                        250       260       270
                 ....*....|....*....|....*....|
gi 114145505 346 RIPAVKERIAKFFGKDVSTTLNADEAVARG 375
Cdd:PRK13929 290 LLNGIKEWLSEEIVVPVHVAANPLESVAIG 319
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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