|
Name |
Accession |
Description |
Interval |
E-value |
| MAGE |
pfam01454 |
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ... |
1059-1223 |
7.91e-19 |
|
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.
Pssm-ID: 426270 Cd Length: 205 Bit Score: 86.17 E-value: 7.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 1059 LVQFLLVKDQAKVPVQLSEMVNVVIREYKDDSLD-IINRANTKLECTFGCQLKEVDTK--------------------TH 1117
Cdd:pfam01454 1 LVRYALACEYQRTPIRREDISKKVLGENRKRLFKkVFEEAQKILRDVFGMELVELPAKeekkttvtsqqrraaakssrSK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 1118 TYIIVNKMayPQCNLLASYLERPKFS-------------LLMVVLSLIFMKGYCIRENLLFSFLFQLGLD---VQETSGL 1181
Cdd:pfam01454 81 SYILVSTL--PPEYRVPAIIWPSKAPsfvldqdeatytgILTVILSLILLSGGSISEQELLRYLRRLGIDtdgTKEIPPL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 257900510 1182 FRITKKLITSvFVRHRYLEYRQIPFTEPAE--YELLWGPRAFLE 1223
Cdd:pfam01454 159 NGNTDDLLKR-LVKQGYLVRTKEGASDDGEeiIEYRVGPRAKVE 201
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
190-675 |
5.07e-15 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 80.75 E-value: 5.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 190 PPPGNPMTHPPPGNPMVHPlthgapmvhggPHGTPMPHVPITGTPiAQQPTPGVLMAQQLTPGVLMVQPPAPGAPmVQPP 269
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPP-----------PRPAPRPSEPAVTSR-ARRPDAPPQSARPRAPVDDRGDPRGPAPP-SPLP 2618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 270 PQAALMTQPAPSITPMAKPPGPGVVMIHPPGARGPIIQTPVSGAPMAQTVLP-----PGQPLATWAPQGQPLILQIQSQV 344
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLgraaqASSPPQRPRRRAARPTVGSLTSL 2698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 345 IRAPPQVPSVPQAPQVQLATPPgwqaTTPNWQVTPQGWPATPLTWQATQVTWQAPTIAWQATQPGRQGHSTIRTGHTPIR 424
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATP----LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 425 PGPAPLLRQIPPMIRQIQPVMRQAPplirqVPIRPAPHGIASQPqlwqvLPPPPPLRQAPQArlllPRVPGTGQVSTVPP 504
Cdd:PHA03247 2775 PAAGPPRRLTRPAVASLSESRESLP-----SPWDPADPPAAVLA-----PAAALPPAASPAG----PLPPPTSAQPTAPP 2840
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 505 vaqihlvPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAPVPQELPVPQELPVPQELPVPQEVP 584
Cdd:PHA03247 2841 -------PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQA 2913
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 585 VPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPlEFQEVQQAQAVGWRAPK 664
Cdd:PHA03247 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-RFRVPQPAPSREAPASS 2992
|
490
....*....|.
gi 257900510 665 VPPHFWQPVSA 675
Cdd:PHA03247 2993 TPPLTGHSLSR 3003
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
9-429 |
6.02e-13 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 74.20 E-value: 6.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 9 GDSSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAweAPEGQLPAPVAQLAQPPGLGAPM 88
Cdd:PHA03247 2603 DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA--PGRVSRPRRARRLGRAAQASSPP 2680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 89 VQAPPlgggMAKPPTPGVL--MVHQPPPGAPMAQSSTPGV--LMLHPSVTGAPLAHPPPPGTPMTHPPGTSMAHPPPPPP 164
Cdd:PHA03247 2681 QRPRR----RAARPTVGSLtsLADPPPPPPTPEPAPHALVsaTPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 165 PPPPPPPPGTPMTHPPPPgtpmghhPPPGNPMTHPPPGNPMVHPLTHGAPMV-----HGGPHGTPMPHVPITGTPIAQQP 239
Cdd:PHA03247 2757 PARPPTTAGPPAPAPPAA-------PAAGPPRRLTRPAVASLSESRESLPSPwdpadPPAAVLAPAAALPPAASPAGPLP 2829
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 240 TPgvlMAQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGvvmiHPPGARGPIIQTPVSGAPMAQTV 319
Cdd:PHA03247 2830 PP---TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA----RPPVRRLARPAVSRSTESFALPP 2902
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 320 LPPgQPLATWAPQGQPLilqiqsqvIRAPPQVPSVPQAPQVQLATPPGWQATTPNWQVTPQGWPATPLTWQATQVTWQAP 399
Cdd:PHA03247 2903 DQP-ERPPQPQAPPPPQ--------PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
|
410 420 430
....*....|....*....|....*....|
gi 257900510 400 TIAWQATQPgrqghstirtghTPIRPGPAP 429
Cdd:PHA03247 2974 VPRFRVPQP------------APSREAPAS 2991
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
14-586 |
1.36e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.50 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 14 PESPV---PAVHSRPTVLMRAPPASSRAPPVPWDPppvdlqaPMAAWQAPQPAWEAPEGQlPAPVAQLAQPPGL------ 84
Cdd:PHA03247 2475 PGAPVyrrPAEARFPFAAGAAPDPGGGGPPDPDAP-------PAPSRLAPAILPDEPVGE-PVHPRMLTWIRGLeelasd 2546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 85 --GAPMVQAPPLgggmAKPPTPGvlmvHQPPPGAPMAQSSTPGVLM--LHPSVTGAPlAHPPPPGTPMTHPPGTSMAHPP 160
Cdd:PHA03247 2547 daGDPPPPLPPA----APPAAPD----RSVPPPRPAPRPSEPAVTSraRRPDAPPQS-ARPRAPVDDRGDPRGPAPPSPL 2617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 161 PPPPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPLTHgapmvhgGPHGTPMPHVPITG-TPIAQQP 239
Cdd:PHA03247 2618 PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR-------RLGRAAQASSPPQRpRRRAARP 2690
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 240 TPGVLMAqqltpgvlMVQPPAPGaPMVQPPPQAALMTQPAPSITPMAKP--PGPGVVMIHPPGARGPIiqTPVSGAPMAQ 317
Cdd:PHA03247 2691 TVGSLTS--------LADPPPPP-PTPEPAPHALVSATPLPPGPAAARQasPALPAAPAPPAVPAGPA--TPGGPARPAR 2759
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 318 TVLPPGQPLATwAPQGQPLILQIQSQVIRAPPQVPSVPQAPQVQLATPPGWQATTPNWQVTPQGWPATPLtwqatqvtwq 397
Cdd:PHA03247 2760 PPTTAGPPAPA-PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL---------- 2828
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 398 APTIAWQATQPgrqghstirtghtPIRPGPAPLLRQIPPMIRQIQPVMRQAPPliRQVPIRPAPhgiASQPQLWQVLPPP 477
Cdd:PHA03247 2829 PPPTSAQPTAP-------------PPPPGPPPPSLPLGGSVAPGGDVRRRPPS--RSPAAKPAA---PARPPVRRLARPA 2890
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 478 PPLRQAPQArlllprVPGTGQVSTVPPVAQIHLVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKG 557
Cdd:PHA03247 2891 VSRSTESFA------LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
|
570 580
....*....|....*....|....*....
gi 257900510 558 QAPVPQELPVPQELpVPQELPvPQEVPVP 586
Cdd:PHA03247 2965 GALVPGRVAVPRFR-VPQPAP-SREAPAS 2991
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2-313 |
1.71e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.65 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 2 SQLSTNLGDSSPPESPVPAVhSRPTVLMRA----PPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQLPAPVAQ 77
Cdd:PHA03247 2668 RRLGRAAQASSPPQRPRRRA-ARPTVGSLTsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 78 LAQPPGLGAPmVQAPPLGGGMAKPPTPGVlmvhqpPPGAPMAQSSTPGVLMLHPSVTGAPLA-----HPPPPGTPMTHPP 152
Cdd:PHA03247 2747 GPATPGGPAR-PARPPTTAGPPAPAPPAA------PAAGPPRRLTRPAVASLSESRESLPSPwdpadPPAAVLAPAAALP 2819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 153 GTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPLTHGAPMVhggpHGTPMPHVPITG 232
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV----RRLARPAVSRST 2895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 233 TPIAQQPTPgvlmaQQLTPgvlmvQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGVVMIHPPGARGPIIQTPVSG 312
Cdd:PHA03247 2896 ESFALPPDQ-----PERPP-----QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
|
.
gi 257900510 313 A 313
Cdd:PHA03247 2966 A 2966
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
332-784 |
9.19e-09 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 60.17 E-value: 9.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 332 QGQPLILQIQSQVIRAPPqvPSVPQAPQVQLATPPGWQATTPnwqvtPQGWPATPLTWQATQVTWQAPTIAWQATQPgrq 411
Cdd:pfam03154 168 QTQPPVLQAQSGAASPPS--PPPPGTTQAATAGPTPSAPSVP-----PQGSPATSQPPNQTQSTAAPHTLIQQTPTL--- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 412 ghstirtgHTPIRPGPAPLLRQIPPMIRQIQPVMRQAPPLIRQVPIRPAPHGIASQPQLWQvlppppplrqapqarlllp 491
Cdd:pfam03154 238 --------HPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQ------------------- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 492 rvpgtgqvstvppvaqiHLVPQSGpqVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAPVPQELPvPQEL 571
Cdd:pfam03154 291 -----------------HPVPPQP--FPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLP-PAPL 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 572 PVPQELPvPQEVPVPQeipvpqeIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQElpvPQELPVPLEFQE 651
Cdd:pfam03154 351 SMPHIKP-PPTTPIPQ-------LPNPQSHKHPPHLSGPSPFQMNSNLPPPPALKPLSSLSTHHP---PSAHPPPLQLMP 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 652 VQQaqavgwraPKVPPHFWQPVSAQEAQEQATQIAHVEQQQPFQGAPasskalQTQLPTHQAQASGLQAELPSVQLQPSW 731
Cdd:pfam03154 420 QSQ--------QLPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQVPS------QSPFPQHPFVPGGPPPITPPSGPPTST 485
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 257900510 732 QGPLPMLQAQPGASATLANFPRGSTRSRMAP---SGEPGPSSLEPRGPPRERRAPA 784
Cdd:pfam03154 486 SSAMPGIQPPSSASVSSSGPVPAAVSCPLPPvqiKEEALDEAEEPESPPPPPRSPS 541
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
522-721 |
2.22e-07 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 55.43 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 522 VLPAQLSIPIPVPQAAAQSAPRTVHCPPI-----IWQAPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIP 596
Cdd:pfam09770 165 VAPKKAAAPAPAPQPAAQPASLPAPSRKMmsleeVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 597 VPQELPVPQELPVPQELPvPQELPVPQELPVPQelPVPQELPVPQELPVPLEFQEVQQAQAVgwRAPKVPPHFWQPVSAQ 676
Cdd:pfam09770 245 QPQQQPQQPQQHPGQGHP-VTILQRPQSPQPDP--AQPSIQPQAQQFHQQPPPVPVQPTQIL--QNPNRLSAARVGYPQN 319
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 257900510 677 EAQEQATQIAHVEQQQPfqgapaSSKALQTQLPTHQAQASGLQAE 721
Cdd:pfam09770 320 PQPGVQPAPAHQAHRQQ------GSFGRQAPIITHPQQLAQLSEE 358
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
232-682 |
5.42e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.22 E-value: 5.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 232 GTPIAQQPTPGVLMAQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGVVMIHPPGARGPIIQTPVS 311
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 312 GAPMAQTVLPPGQPLATWAPQGQPlilqiqsqvirAPPQVPSVPQAPQvqlatppgwQATTPNwqvtpQGWPAT-PLTWQ 390
Cdd:PRK07764 471 AAAPEPTAAPAPAPPAAPAPAAAP-----------AAPAAPAAPAGAD---------DAATLR-----ERWPEIlAAVPK 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 391 ATQVTWQAPTIAWQATQPGRQ----GHSTIRTGHTPIRPGPAPLLRQippmirqiqpVMRQAPPLIRQVPIRPAPHGIAS 466
Cdd:PRK07764 526 RSRKTWAILLPEATVLGVRGDtlvlGFSTGGLARRFASPGNAEVLVT----------ALAEELGGDWQVEAVVGPAPGAA 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 467 QPqlWQVLPPPPPLRQAPQARLLLPRVPGTGQVSTVPPVAQIHlVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVH 546
Cdd:PRK07764 596 GG--EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAP-AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 547 CPPiiwQAPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELP 626
Cdd:PRK07764 673 AGG---AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 257900510 627 VPQELP--VPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVPPhfWQPVSAQEAQEQA 682
Cdd:PRK07764 750 DPAGAPaqPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS--MDDEDRRDAEEVA 805
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
11-293 |
1.10e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.40 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 11 SSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDlQAPMAAWQAPQPAWEAPEGQLPAPVAQLAQPPGLGAPMVQ 90
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 91 AP-PLGGGMAkpptPGVLMVHQPPPGAPMAQSSTPGvlmlHPSVTGAPLAHPPPPGTPMTHPPgtsmahPPPPPPPPPPP 169
Cdd:PHA03247 2848 PSlPLGGSVA----PGGDVRRRPPSRSPAAKPAAPA----RPPVRRLARPAVSRSTESFALPP------DQPERPPQPQA 2913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 170 PppgtpmthppppgtpmghhPPPGNPMTHPPPGNPMVHPLTHGAPmvhggphgtPMPHVPITGTPIAQQPTPGVlmaqqL 249
Cdd:PHA03247 2914 P-------------------PPPQPQPQPPPPPQPQPPPPPPPRP---------QPPLAPTTDPAGAGEPSGAV-----P 2960
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 257900510 250 TPGVLMVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGV 293
Cdd:PHA03247 2961 QPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV 3004
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
512-931 |
1.27e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.40 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 512 PQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPiiwqAPKGQAPVPQELPVPQELPVPqELPVPQEVPVPQEIPV 591
Cdd:PHA03247 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDP----PPPSPSPAANEPDPHPPPTVP-PPERPRDDPAPGRVSR 2663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 592 PQEIPVPQELPVPQElpvPQELPVPQELPVP-------QELPVPQELPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPK 664
Cdd:PHA03247 2664 PRRARRLGRAAQASS---PPQRPRRRAARPTvgsltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 665 VPPHFWQPVSAQEAQEQATQIAhveQQQPFQGAPASSKALQTQLPTHQAQASGLQAELPSVQLQPSWQGP----LPMLQA 740
Cdd:PHA03247 2741 PPAVPAGPATPGGPARPARPPT---TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPpaavLAPAAA 2817
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 741 QPGASATLANFPRGSTRSRMAPSGEPGPssLEPRGPPRERRAPARD--KKGPPKERMFIGATFCAPRGASASRAYVPTAW 818
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGP--PPPSLPLGGSVAPGGDvrRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 819 KNLPatsetFPATSRVFPSTSHFQPASSNAFRGPSAASESPKSLPFALQDPYACVEALPAVPWVPYPDGNASSACKSVPA 898
Cdd:PHA03247 2896 ESFA-----LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970
|
410 420 430
....*....|....*....|....*....|...
gi 257900510 899 ILMVAAAAPQASATAAEASKSSEPPRRPGKATR 931
Cdd:PHA03247 2971 RVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR 3003
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
524-883 |
1.68e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 524 PAQLSIPIPVPQAAAQSAPrtvhcppiiwqaPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPV 603
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDRSVP------------PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLP 2618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 604 PQELPVPQelPVPQELPVPQELPVPQELPVPqELPVPQELPVPLEFQEVQQAQAVGWRA-PKVPPHFWQPVSAQEAQEQA 682
Cdd:PHA03247 2619 PDTHAPDP--PPPSPSPAANEPDPHPPPTVP-PPERPRDDPAPGRVSRPRRARRLGRAAqASSPPQRPRRRAARPTVGSL 2695
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 683 TQIAHVEQQQPFQGAPASSKALQTQLPTHQAQASGLQAELPSVQLQPswqgPLPMLQAQPGASATLANFPRGSTRSRMAP 762
Cdd:PHA03247 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP----AVPAGPATPGGPARPARPPTTAGPPAPAP 2771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 763 SGEPgpsslePRGPPRERRAPARDKKGPPKErmfigaTFCAPRGASASRAYVPTAWKNLPATSEtfPATSRVFPSTShfQ 842
Cdd:PHA03247 2772 PAAP------AAGPPRRLTRPAVASLSESRE------SLPSPWDPADPPAAVLAPAAALPPAAS--PAGPLPPPTSA--Q 2835
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 257900510 843 PASSNAFRGPSAASESPKSL-----PFALQDPYACVEALPAVPWVP 883
Cdd:PHA03247 2836 PTAPPPPPGPPPPSLPLGGSvapggDVRRRPPSRSPAAKPAAPARP 2881
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
528-734 |
4.28e-06 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.19 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 528 SIPIPVPQAAAQSAPRtvhcppiiwqapkgQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQE- 606
Cdd:PRK10811 844 RYPVVRPQDVQVEEQR--------------EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEv 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 607 LPVPQELPVPQELPVPQELPV--PQELPVPQELPVPQE--LPVPLEFQEVQQAQAVGwRAPKVPPhfwQPVSAQEAQEQA 682
Cdd:PRK10811 910 VVVETTHPEVIAAPVTEQPQVitESDVAVAQEVAEHAEpvVEPQDETADIEEAAETA-EVVVAEP---EVVAQPAAPVVA 985
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 257900510 683 TQIAHVEQQQPFQGAPASSKALQTQLPTHQAQASGLQAELPSVQLQPS----WQGP 734
Cdd:PRK10811 986 EVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAPrhsdWQRP 1041
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
405-663 |
4.48e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.03 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 405 ATQPGRQGhstirTGHTPIRPGPAPLLRQIPPmiRQIQPVMRQAPPLIRQVPIRPAPHGIASQPQLWQVLPPPPPLRQAP 484
Cdd:PRK12323 362 AFRPGQSG-----GGAGPATAAAAPVAQPAPA--AAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 485 QARLLLPRVPGTGQVSTVPPVAQIhlVPQSGPQVPQTVLPAQLSIPIPVPQA-AAQSAPRTVHCPPIIWQAPKGQAPVPQ 563
Cdd:PRK12323 435 AARQASARGPGGAPAPAPAPAAAP--AAAARPAAAGPRPVAAAAAAAPARAApAAAPAPADDDPPPWEELPPEFASPAPA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 564 ELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPV-PQELPV-PQELPV-- 639
Cdd:PRK12323 513 QPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMfDGDWPAlAARLPVrg 592
|
250 260
....*....|....*....|....*
gi 257900510 640 -PQELPVPLEFQEVQQAqAVGWRAP 663
Cdd:PRK12323 593 lAQQLARQSELAGVEGD-TVRLRVP 616
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
486-892 |
8.15e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.37 E-value: 8.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 486 ARLLLPRVPGT--GQVSTVPPVAQiHLVPQSGPQVPQTVLPAQlsipipvPQAAAQSAPrtvhcPPIIWQAPKGQAPVPQ 563
Cdd:PRK07764 360 ARMLLPSASDDerGLLARLERLER-RLGVAGGAGAPAAAAPSA-------AAAAPAAAP-----APAAAAPAAAAAPAPA 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 564 elPVPQELPVPQELPVPQEVPVPQEIPVPQEiPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQEL 643
Cdd:PRK07764 427 --AAPQPAPAPAPAPAPPSPAGNAPAGGAPS-PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 644 PVPLEFQEVQQA-----QAVGWRAPKVPPHFWQPVSAQEAQEQATQIAHVEQ--QQPF---QGAPASSKALQTQL-PTHQ 712
Cdd:PRK07764 504 AGADDAATLRERwpeilAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGglARRFaspGNAEVLVTALAEELgGDWQ 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 713 AQA------SGLQAELPSVQLQPSWQGPLPMLQAQPGASATLANFPRGSTRSRMAPSGEPGPSSLEPRGPPRERRAPARD 786
Cdd:PRK07764 584 VEAvvgpapGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 787 KKGPPKERMFIGATFCAPRGASASRAYVPTAWKNLPATSETFPATSRVFPSTS----HFQPASSNAFRGPSAASESPK-S 861
Cdd:PRK07764 664 DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDpaaqPPQAAQGASAPSPAADDPVPLpP 743
|
410 420 430
....*....|....*....|....*....|.
gi 257900510 862 LPFALQDPYACVEALPAVPWVPYPDGNASSA 892
Cdd:PRK07764 744 EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
504-711 |
2.33e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 48.88 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 504 PVAQihlvpqsgPQVPQTVlpAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAPVPQELPVPQELPVPqelpvPQEV 583
Cdd:PRK10811 846 PVVR--------PQDVQVE--EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP-----EEVV 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 584 PVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQElPVPQELPVPQELPVPQELPVPQELPVPLEFQEVQQAQAVgwrAP 663
Cdd:PRK10811 911 VVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEH-AEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVV---AE 986
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 257900510 664 KVPPHFWQPVSAQEAQEQATQIAHVEQQQ---PFQGAPASskALQTQLPTH 711
Cdd:PRK10811 987 VAAEVETVTAVEPEVAPAQVPEATVEHNHataPMTRAPAP--EYVPEAPRH 1035
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
9-220 |
2.70e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.72 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 9 GDSSPPeSPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPvdlQAPMAAWQAPQPAwEAPEGQLPAPVAQlaqppglgAPM 88
Cdd:PRK12323 370 GGAGPA-TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVA-AAPARRSPAPEAL--------AAA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 89 VQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAHPPPpgTPMTHPPGTSMAHPPPPPPPPPP 168
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP--ADDDPPPWEELPPEFASPAPAQP 514
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 257900510 169 PPPPGTPMTHPPPPGTPMGHhPPPGNPMTHPPPGNPMVHPLTHGAPMVHGGP 220
Cdd:PRK12323 515 DAAPAGWVAESIPDPATADP-DDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
421-646 |
3.46e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.54 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 421 TPIRPGPAPLLRQiPPMIRQIQPVMRQAPPLIRqvpirPAPHGIASQPQLWQVLPPPPPLRQAPQARLLLPRVPGTGQVS 500
Cdd:PRK10263 343 TPPVASVDVPPAQ-PTVAWQPVPGPQTGEPVIA-----PAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPA 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 501 TVPPVAQIHLVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAPVPQELPVPQELPVPQELPVP 580
Cdd:PRK10263 417 QQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVV 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257900510 581 QEVPvPQEIPVPQEIPVPQELPVPQELPVPQELPVPQelPVPQELPVPQELPVPQELPVPQELPVP 646
Cdd:PRK10263 497 EETK-PARPPLYYFEEVEEKRAREREQLAAWYQPIPE--PVKEPEPIKSSLKAPSVAAVPPVEAAA 559
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
52-387 |
3.60e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 52 APMAAWQAPQPAWEAPEGQLPAPVAQLAQPPGLGAPMVQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSSTPGVLMLHP 131
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 132 SVTGAPLAHPPPPGTPMTHPPGTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGHhpppgNPMTHPPPGNPMVhpLTH 211
Cdd:PRK07764 480 PAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLP-----EATVLGVRGDTLV--LGF 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 212 GAP-----------------MVHGGPHGTPMPHVPITGTPIAQQPTPGVLMAQQLTPGVLmVQPPAPGAPmVQPPPQAAL 274
Cdd:PRK07764 553 STGglarrfaspgnaevlvtALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEA-ARPAAPAAP-AAPAAPAPA 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 275 MTQPAPSITPMAKPPGPGVVMIHPPGARGPIIQTPVSGAPMAQTVLPPGQPLATWAPQGQPlilQIQSQVIRAP-PQVPS 353
Cdd:PRK07764 631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA---APAGAAPAQPaPAPAA 707
|
330 340 350
....*....|....*....|....*....|....
gi 257900510 354 VPQAPQVQLATPPGWQATTPNWQVTPQGWPATPL 387
Cdd:PRK07764 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
420-794 |
4.21e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 420 HTPIRPGPAPLLRQIPPMIRQIQPVMRQAPPLIRQVP-IRPAPHGIASQPQLWQVLPPPPPLRQAPQARLLLPRVPGTGQ 498
Cdd:PHA03378 560 HDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPwPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQ 639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 499 VSTVPPVA--------QIHLVPQSGPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPiiwqAPKGQAPVPQELPVPQE 570
Cdd:PHA03378 640 PITFNVLVfptphqppQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPP----RAPTPMRPPAAPPGRAQ 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 571 LPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELP-VPQELPVPQELPVPQELPvplef 649
Cdd:PHA03378 716 RPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPgAPTPQPPPQAPPAPQQRP----- 790
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 650 qevqQAQAVGWRAPKVPPHFWQpVSAQEAQEQATQIAHVEQQQPFQGAPASSKALQTQLPTHQAQASGLQAELPSVQLQP 729
Cdd:PHA03378 791 ----RGAPTPQPPPQAGPTSMQ-LMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDK 865
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257900510 730 SWQGPL---PMLQAQPGASATLANFPRGSTRSRMAPSGEPGPSSLEPRGPPRERRAPARDKKGPPKER 794
Cdd:PHA03378 866 IVQAPVfypPVLQPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVES 933
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
528-793 |
5.28e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.77 E-value: 5.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 528 SIPIPVPQAAAQSAPRTVHCPPIiwqapkgqAPVPQELPVPQELPVPQELPVP-QEVPVPQeIPVPQEIPVPQELPvpqe 606
Cdd:PRK10263 315 PITEPVAVAAAATTATQSWAAPV--------EPVTQTPPVASVDVPPAQPTVAwQPVPGPQ-TGEPVIAPAPEGYP---- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 607 lpvpqelpvpqelPVPQELPVPQELPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVPPHFWQPVSAQEAQEQATQIA 686
Cdd:PRK10263 382 -------------QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQ 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 687 HVEQQQPFQGAPASskalQTQLPTHQAQASGLQAELPSVQLQPSWQGPLPMLQAQPGASATLANFP-----RGSTRSRMA 761
Cdd:PRK10263 449 AEEQQSTFAPQSTY----QTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEeveekRAREREQLA 524
|
250 260 270
....*....|....*....|....*....|..
gi 257900510 762 PSGEPGPSSLEPRGPPRERRAPARDKKGPPKE 793
Cdd:PRK10263 525 AWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVE 556
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
499-785 |
5.79e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.77 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 499 VSTVPPVAQIHLVPQS---------GPQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHcppiiWQAPKGQAPVPQELPVPQ 569
Cdd:PRK10263 340 VTQTPPVASVDVPPAQptvawqpvpGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEP-----LQQPVQPQQPYYAPAAEQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 570 ELPVPQELPVP-QEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQ-ELPVPQelPVPQELPVPQELPVPQELPVPL 647
Cdd:PRK10263 415 PAQQPYYAPAPeQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQtEQTYQQ--PAAQEPLYQQPQPVEQQPVVEP 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 648 EfQEVQQAQavgwraPKVPP-HFWQPVSAQEAQEQATQIAHveqqqpFQGAPASSKALQTQLPTHQAQASGLQAELPSVQ 726
Cdd:PRK10263 493 E-PVVEETK------PARPPlYYFEEVEEKRAREREQLAAW------YQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAA 559
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257900510 727 LQPSWQGPLPMLQAQPGASATLAnfprgSTRSRMAPSGEPGPSSLEPRGP----PRERRAPAR 785
Cdd:PRK10263 560 AVSPLASGVKKATLATGAAATVA-----APVFSLANSGGPRPQVKEGIGPqlprPKRIRVPTR 617
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
506-623 |
5.86e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 45.76 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 506 AQIHLVPQSGP-QVPQTVLPAQLSIPIPVPQAAAQSAprtvhcppiiwQAPKGQAPVPQELPVPQELPVPQELPVPQEVP 584
Cdd:PRK11633 39 AAIPLVPKPGDrDEPDMMPAATQALPTQPPEGAAEAV-----------RAGDAAAPSLDPATVAPPNTPVEPEPAPVEPP 107
|
90 100 110
....*....|....*....|....*....|....*....
gi 257900510 585 VPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQ 623
Cdd:PRK11633 108 KPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
528-682 |
6.31e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.17 E-value: 6.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 528 SIPIPVPQAAAQSAPrtvhcPPIIWQAPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQEL 607
Cdd:PRK07994 362 AAPLPEPEVPPQSAA-----PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257900510 608 PVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPLEfqevqqaqAVGWRAPKVPPHFWQPVSAQEAQEQA 682
Cdd:PRK07994 437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE--------AYRWKATNPVEVKKEPVATPKALKKA 503
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
516-648 |
1.17e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.40 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 516 PQVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIIWQAPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEI-PVPQE 594
Cdd:PRK07994 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSePAAAS 447
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 257900510 595 IPVPQELPVPQELPVPQELPVPQELPVPQEL----PVPQELPVPQELPVPQELPVPLE 648
Cdd:PRK07994 448 RARPVNSALERLASVRPAPSALEKAPAKKEAyrwkATNPVEVKKEPVATPKALKKALE 505
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
451-723 |
1.61e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 451 LIRQVPIRPAPHGIASQpqlwqvlppppplrqapqarlllPRVPGTGQVSTVPPVAqihlvpqsgpQVPQTVLPAQLSIP 530
Cdd:PRK12323 357 LLRMLAFRPGQSGGGAG-----------------------PATAAAAPVAQPAPAA----------AAPAAAAPAPAAPP 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 531 IPVPQAAAQSAPrtvhcPPIIWQAPKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPvpqelPVPQELPVP 610
Cdd:PRK12323 404 AAPAAAPAAAAA-----ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP-----AAAGPRPVA 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 611 QELPVPQELPVPQELPVPQELPVPQELPVPQELPVPLEFQevQQAQAVGWRAPKVP-PHFWQPVSAQEAQEQATQIAHVE 689
Cdd:PRK12323 474 AAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQ--PDAAPAGWVAESIPdPATADPDDAFETLAPAPAAAPAP 551
|
250 260 270
....*....|....*....|....*....|....*...
gi 257900510 690 ----QQQPFQGAPASSKALQTQLPTHQAQASGLQAELP 723
Cdd:PRK12323 552 raaaATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
11-206 |
2.81e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 11 SSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQLPAPVAQLAQPPGLGAPMVQ 90
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 91 APPLGGGMAKPPTPGVlmvHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAHPPPPGTPMTHPPGTSMAHPPPPPPPPPPPP 170
Cdd:PRK07764 674 GGAAPAAPPPAPAPAA---PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750
|
170 180 190
....*....|....*....|....*....|....*.
gi 257900510 171 PPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMV 206
Cdd:PRK07764 751 PAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
3-399 |
5.04e-04 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 44.61 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 3 QLSTNLGDSSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQLPAPVAQLAQPP 82
Cdd:pfam09606 87 QNLAGQGTRPQMMGPMGPGPGGPMGQQMGGPGTASNLLASLGRPQMPMGGAGFPSQMSRVGRMQPGGQAGGMMQPSSGQP 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 83 GLGAPmvQAPPLGGGMAKPPTPGVLMVHQPPPGAPMaqsstpgvlmlhPSVTGAPLahPPPPGTPMTHPPGTSMAHPPPP 162
Cdd:pfam09606 167 GSGTP--NQMGPNGGPGQGQAGGMNGGQQGPMGGQM------------PPQMGVPG--MPGPADAGAQMGQQAQANGGMN 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 163 PPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPltHGAPMVHGGPHGtpmphvpitgtpiaQQPtpg 242
Cdd:pfam09606 231 PQQMGGAPNQVAMQQQQPQQQGQQSQLGMGINQMQQMPQGVGGGAG--QGGPGQPMGPPG--------------QQP--- 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 243 vlmaQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGVVMIHPPGARGPIIQTPVSGAPMAQTVLPP 322
Cdd:pfam09606 292 ----GAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQR 367
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 257900510 323 GQPLATwaPQGQPLILQIQSQVirAPPQVPSVPQAPQVQLATPPGWQattPNWQVTPQGWPATPLTWQATQVTWQAP 399
Cdd:pfam09606 368 GQPGMM--SSPSPVPGQQVRQV--TPNQFMRQSPQPSVPSPQGPGSQ---PPQSHPGGMIPSPALIPSPSPQMSQQP 437
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
230-793 |
5.22e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 230 ITGTPIAQQPTPGVLMAQQLTP-GVLMVQPPAPGAPMVQPPPQAALMTQPAPSitpmakppgPGVVMIHPPGARG-PIIQ 307
Cdd:PHA03247 2386 IAARPLARSPPCLVLVDISMAPlFVLWEQPDPPGPPDVRFVGSEEIEELPFVS---------PGGDVLAGLAADGdPFFA 2456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 308 TPVSGAPMAQTVLP----PGQPLATWAPQGQ-PLILQIQSQVIRAPPQVPSVPQAPQVQlaTPPGWQATTPNWQVTPQGW 382
Cdd:PHA03247 2457 RTILGAPFSLSLLLgelfPGAPVYRRPAEARfPFAAGAAPDPGGGGPPDPDAPPAPSRL--APAILPDEPVGEPVHPRML 2534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 383 P-ATPLTWQATQVTWQAPTIAWQATQPGRQGHSTIRTGHTPIRPGPAPLLRQIPPMIRQiQPVMRQAPPLIRQVPIRPAP 461
Cdd:PHA03247 2535 TwIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP-QSARPRAPVDDRGDPRGPAP 2613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 462 HGIAsqpqlwqvLPPPPPLRQAPQARLLLPRVPGTGQVSTVPPVAQihlvPQSGPQVPQTVLPAQLSIPIPVPQAAA--Q 539
Cdd:PHA03247 2614 PSPL--------PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPER----PRDDPAPGRVSRPRRARRLGRAAQASSppQ 2681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 540 SAPRTVHCPPIIWQAPKGQAPVPQELPVPQELPVPQELPVPqevPVPQeiPVPQEIPVPQELPVPQELPVPQELPVPQEL 619
Cdd:PHA03247 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLP---PGPA--AARQASPALPAAPAPPAVPAGPATPGGPAR 2756
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 620 PVPQELPVPQELPVPQELPV---PQELPVPLEFQEVQQAQAVGwrAPKVPPHFWQPVSAQEAQEQATQIAHVEQQQPFQG 696
Cdd:PHA03247 2757 PARPPTTAGPPAPAPPAAPAagpPRRLTRPAVASLSESRESLP--SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 697 APASSKALQTQLPTHQAQASGLQAELPSVQLQPSWQGPlpmlqAQPGASATlanfPRGSTRSRMAPSGEPGPSSLEPRGP 776
Cdd:PHA03247 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPA-----AKPAAPAR----PPVRRLARPAVSRSTESFALPPDQP 2905
|
570
....*....|....*..
gi 257900510 777 PRERRAPARDKKGPPKE 793
Cdd:PHA03247 2906 ERPPQPQAPPPPQPQPQ 2922
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
465-777 |
6.39e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.37 E-value: 6.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 465 ASQPQLWQVLPPPPPLRQAPQARLLLPRVPGTGQVSTVPPVAQIHLVPQSGPQVPQtvlPAQLSIPIPVPQAAAQSAPrT 544
Cdd:pfam03154 161 SAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQ---PPNQTQSTAAPHTLIQQTP-T 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 545 VHCPPIIWQAPKGQaPVPQELPVPQELPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQE 624
Cdd:pfam03154 237 LHPQRLPSPHPPLQ-PMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSP 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 625 lPVPQELPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVPPHFWQPVSAQEAQEQATQIAHVEQQQPFQG----APAS 700
Cdd:pfam03154 316 -AAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMnsnlPPPP 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 701 SKALQTQLPTHQ---AQASGLQAELPSVQLQPSWQGPlPMLQAQPGASATLANFPRGSTRSRMAPSGEPGPSSLEPRGPP 777
Cdd:pfam03154 395 ALKPLSSLSTHHppsAHPPPLQLMPQSQQLPPPPAQP-PVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPP 473
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
526-647 |
8.57e-04 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 43.64 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 526 QLSIPIPVPQAAAQSAPRTVH------CPPIIWQA----PKGQAPVPQELPVPQELPVPQELPVPQEVPVPQEIPVP--Q 593
Cdd:TIGR01628 384 QLPMGSPMGGAMGQPPYYGQGpqqqfnGQPLGWPRmsmmPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQpvM 463
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 257900510 594 EIPVPQELPVPQELPVPQELPVpQELPVPQELPVPQELPVPQELPVPQELPVPL 647
Cdd:TIGR01628 464 YPPNYQSLPLSQDLPQPQSTAS-QGGQNKKLAQVLASATPQMQKQVLGERLFPL 516
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
92-291 |
1.14e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.33 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 92 PPLGGGMAKPPTPGVLMVHQPPPG--APMAQSSTPGVLMLHPSVTGAPLAHPPPPG---TPMTHPPGTSMAHPPPPPPPP 166
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAaapARRSPAPEALAAARQASARGP 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 167 PPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPgNPMVHPLTHGAPMVHGGPHGTPMPHVPITGTPIAQQPTP-GVLM 245
Cdd:PRK12323 445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA-PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPaGWVA 523
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 257900510 246 AQQLTPGvlmVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGP 291
Cdd:PRK12323 524 ESIPDPA---TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-131 |
1.65e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 42.84 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 1 MSQLSTNLGDSSPPESPVPAVHSRPTVLMRAPPASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQLPAPVAQLAQ 80
Cdd:PRK14971 359 LAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN 438
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 257900510 81 PPGLGAPMVqapplgggmakppTPGVLMVHQPPPgaPMAQSSTpGVLMLHP 131
Cdd:PRK14971 439 PPSTAPQAV-------------RPAQFKEEKKIP--VSKVSSL-GPSTLRP 473
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
72-461 |
1.89e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 72 PAPVAQLAQPPGLGAPMVQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSStpgvlmlHPSVTGAPLAHPPPPGTPMTHP 151
Cdd:PRK07764 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA-------PPSPAGNAPAGGAPSPPPAAAP 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 152 PGTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPP-------------GNPMVHPLTHGAPMVHG 218
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLrerwpeilaavpkRSRKTWAILLPEATVLG 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 219 --GPHGTPMPHVPITGTPIAQQPTPGVLM---AQQL--TPGVLMVQPPAPGA----------PMVQPPPQAALMTQPAPS 281
Cdd:PRK07764 543 vrGDTLVLGFSTGGLARRFASPGNAEVLVtalAEELggDWQVEAVVGPAPGAaggegppapaSSGPPEEAARPAAPAAPA 622
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 282 ITPMAKPPGPgvvmihPPGARGPIIQTPVSGAPMAQTVLPPGQPLATWAPQGQPLILQIQSQVIRAPPQVPSVPQAPQVQ 361
Cdd:PRK07764 623 APAAPAPAGA------AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 362 latPPGWQATTPNWQVTPQGWPATPLTWQAtqvtwqaptiawQATQPGRQGHSTIRTGHTPIRPGPAPLLRQIPPMIRQI 441
Cdd:PRK07764 697 ---APAQPAPAPAATPPAGQADDPAAQPPQ------------AAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
|
410 420
....*....|....*....|
gi 257900510 442 QPVMRQAPPLIRQVPIRPAP 461
Cdd:PRK07764 762 PAPAPAAAPAAAPPPSPPSE 781
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
223-354 |
2.95e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 41.72 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 223 TPMPhVPITGTPIAQQPTPgvlmaQQLTPGVLMVQPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPgvvmIHPPGAR 302
Cdd:PRK14950 361 VPVP-APQPAKPTAAAPSP-----VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH----TPESAPK 430
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 257900510 303 GPIIQTPVSGAPMAQtvlPPGQPLATWAPQGQPLILQIQSQVI------RAPPQVPSV 354
Cdd:PRK14950 431 LTRAAIPVDEKPKYT---PPAPPKEEEKALIADGDVLEQLEAIwkqilrDVPPRSPAV 485
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
602-850 |
3.34e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 602 PVPQELPVPQELPVPQElPVPQELPVP-QELPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPKVP-PHFWQPVSAQEAQ 679
Cdd:PRK10263 339 PVTQTPPVASVDVPPAQ-PTVAWQPVPgPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPqQPYYAPAAEQPAQ 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 680 EQATQIAHVEQQQPFQGAPASSKALQTQLPTHQAQASGLQAElPSVQLQPSWQGPL---PMLQAQPGASATLANFPrgst 756
Cdd:PRK10263 418 QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ-STYQTEQTYQQPAaqePLYQQPQPVEQQPVVEP---- 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 757 rsrmapsgEPGPSSLEPRGPP-------RERRAPARDKKG--------PPKERMFIGATFCAPRGASASRAYVPTAWKNL 821
Cdd:PRK10263 493 --------EPVVEETKPARPPlyyfeevEEKRAREREQLAawyqpipePVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL 564
|
250 260 270
....*....|....*....|....*....|.
gi 257900510 822 PA--TSETFPATSRVFPSTSHFQPASSNAFR 850
Cdd:PRK10263 565 ASgvKKATLATGAAATVAAPVFSLANSGGPR 595
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
14-372 |
4.08e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 14 PESPVPAV--HSRPTVLMRAP--PASSRAPPVPWDPPPVDLQAPMAAWQAPQPAWEAPEGQL------------------ 71
Cdd:PHA03378 445 PHSQAPTVvlHRPPTQPLEGPtgPLSVQAPLEPWQPLPHPQVTPVILHQPPAQGVQAHGSMLdllekddedmeqrvmatl 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 72 --PAPVAQLAqppGLGAPMVQAPPLGGGMAKP-PTPGVLMVHQPPPG------APMAQSSTPGVLMLHPSVTGAPLAHPP 142
Cdd:PHA03378 525 lpPSPPQPRA---GRRAPCVYTEDLDIESDEPaSTEPVHDQLLPAPGlgplqiQPLTSPTTSQLASSAPSYAQTPWPVPH 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 143 PPGTP-----MTHPPGTSmahpppppppppppPPPGTPMTHPPPPGTPMGHHPPPGNPMTHPPPGNPMVHPLTHGAPMVH 217
Cdd:PHA03378 602 PSQTPeppttQSHIPETS--------------APRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWT 667
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 218 GGPHGTPMPHVPITGTPIAQQPTPGVLMAQQLTPGVLmvqPPAPGAPMVQPPPQAALMTQPAPSITPMAKPPGPGVVMIH 297
Cdd:PHA03378 668 QIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRA 744
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257900510 298 PPGARGPIIQTPVSGAP--MAQTVLPPGQPLATWAPQGQPLILQiQSQVIRAPPQVPSVPQAP-QVQLATPPGWQATT 372
Cdd:PHA03378 745 RPPAAAPGRARPPAAAPgrARPPAAAPGAPTPQPPPQAPPAPQQ-RPRGAPTPQPPPQAGPTSmQLMPRAAPGQQGPT 821
|
|
| PTZ00441 |
PTZ00441 |
sporozoite surface protein 2 (SSP2); Provisional |
522-664 |
4.10e-03 |
|
sporozoite surface protein 2 (SSP2); Provisional
Pssm-ID: 240420 [Multi-domain] Cd Length: 576 Bit Score: 41.49 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 522 VLPAQLSIPIPVPQAAAQSAPRTV---------HCPPIIWQAPKGQAPVPQE----LPVPQELPVPQELPVPQEVPVPqe 588
Cdd:PTZ00441 284 VEPEPLPVPAPVPPTPEDDNPRPTddefavpnfNEGLDVPDNPQDPVPPPNEgkdgNPNEENLFPPGDDEVPDESNVP-- 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257900510 589 iPVPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPVPLEFQEVQQAQAVGWRAPK 664
Cdd:PTZ00441 362 -PNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPEDDRDNNFNEPKKPENKGDGQNE 436
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
127-404 |
4.45e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 127 LMLHPSVTGAPLAHPPPPGTPMTHPPGTSMAHPPPPPPPPPPPPPPGTPMTHPpppgtpmghhPPPGNPMTHPPPGNPMV 206
Cdd:PRK12323 361 LAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAA----------AAARAVAAAPARRSPAP 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 207 HPLTHGAPMVHGGPHGTPMPHVPITGTPIAQQPTPgvlmaqqltpgvlMVQPPAPGAPMVQPPPQAALMTQPAPSitPMA 286
Cdd:PRK12323 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPA-------------AAGPRPVAAAAAAAPARAAPAAAPAPA--DDD 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 287 KPPG---PGVVMIHPPGARGPIIQTPVSGAPMAQTVLPPGQPLATWAPQgqplilqiqsqviRAPPQVPSVPQAPQVQLA 363
Cdd:PRK12323 496 PPPWeelPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPA-------------PAAAPAPRAAAATEPVVA 562
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 257900510 364 TPPGWQATTPNWQVTPQGWPA----TPLTWQATQVTWQAPTIAWQ 404
Cdd:PRK12323 563 PRPPRASASGLPDMFDGDWPAlaarLPVRGLAQQLARQSELAGVE 607
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
70-374 |
5.26e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 41.29 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 70 QLPAPVAQLAQPPGLGAPMVQAPPLGGGMAKPPTPGVLMVHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAHPPPPGTPmt 149
Cdd:pfam03154 168 QTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSP-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 150 HPPGTSMAHPPPPPPppppppppgtpmthppppgTPMGHHPPPgnpmTHPPPGNPMVHPLTHGAPMVhggPHGTPMPHVP 229
Cdd:pfam03154 246 HPPLQPMTQPPPPSQ-------------------VSPQPLPQP----SLHGQMPPMPHSLQTGPSHM---QHPVPPQPFP 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 230 ITGTPIAQQPTPGVLMAQQLTPGVLMVQPPAPGAPMVQPPPQAALMTqPAPSITPMAKPPGPGVV--------MIHPPGA 301
Cdd:pfam03154 300 LTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLP-PAPLSMPHIKPPPTTPIpqlpnpqsHKHPPHL 378
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257900510 302 RGPIIQTPVSGAPMAQTVLPPGQPLATWAPQGQPLILQIQSQVIRAPPQVPSVPQAPQVQLATPPGWQATTPN 374
Cdd:pfam03154 379 SGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTS 451
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
491-667 |
5.51e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.99 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 491 PRVPGTGQVSTVPPVAQIHLVPQSGPqVPQTVLPAQLSIPIPVPQAAAQSAPRTVHCPPIiwQAPKGQAPVPQELPVPQE 570
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGA-RAAAAVGASAVPAVTAVTGAAGAALAPKAAAAA--AATRAEAPPAAPAPPATA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 571 LPVPQELPVPQEVPVPQEIPVPQEIPVPQELPVPQELPVPQELPVP-QELPVPQELPVPQELPVPQELPVPQELPVPLEF 649
Cdd:PRK07003 437 DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASdAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
|
170
....*....|....*...
gi 257900510 650 QEVQQAQAVGWRAPKVPP 667
Cdd:PRK07003 517 SREDAPAAAAPPAPEARP 534
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
554-693 |
6.50e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.91 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 554 APKGQAPVPQELPVPQElPVPQELPVPQEVPVPQeipvPQEIPVPQELPVPQELPVPQELPVPQELPVPQELPVPQELPV 633
Cdd:PRK14971 369 ASGGRGPKQHIKPVFTQ-PAAAPQPSAAAAASPS----PSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 257900510 634 PQELPVPQ---ELPVPLEfqevqqaqavgwRAPKVPPHFWQPVsaQEAQEQATQIAHVEQQQP 693
Cdd:PRK14971 444 PQAVRPAQfkeEKKIPVS------------KVSSLGPSTLRPI--QEKAEQATGNIKEAPTGT 492
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
346-707 |
8.70e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 40.43 E-value: 8.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 346 RAPPQVPSvPQAPQVQLATPPGWQATTPN---WQVTPQGwPATPLTWQATQVTWQAPTIAWQATQPGRQGHSTIRTGhtp 422
Cdd:PHA03379 417 RPPVEKPR-PEVPQSLETATSHGSAQVPEpppVHDLEPG-PLHDQHSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDG--- 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 423 iRPGPAPLLRQIPPMIRQIQPVMRQAPPlIRQVPIRPAPHGIASQPQlwQVLPPPPPLRQAPQARLLlprvPGTGQVSTV 502
Cdd:PHA03379 492 -RPACAPVPAPAGPIVRPWEASLSQVPG-VAFAPVMPQPMPVEPVPV--PTVALERPVCPAPPLIAM----QGPGETSGI 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 503 PPVAQIHLVPQSGPQVPQTvlPAQLSIPIPVPQAAAQSAPRTVHC---PPIIWQAPKGQapvPQELPVPQELPVPQELPV 579
Cdd:PHA03379 564 VRVRERWRPAPWTPNPPRS--PSQMSVRDRLARLRAEAQPYQASVevqPPQLTQVSPQQ---PMEYPLEPEQQMFPGSPF 638
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 580 PQEVPVPQEIPVPQEIPVPQELPVPQelPVPQELPVP----QELPVPqelPVPQELPVPQELPVPQELPVPLE-FQEVQQ 654
Cdd:PHA03379 639 SQVADVMRAGGVPAMQPQYFDLPLQQ--PISQGAPLAplraSMGPVP---PVPATQPQYFDIPLTEPINQGASaAHFLPQ 713
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 655 AQAVGwraPKVPPHFW-------QPVSAQEAQEQ------ATQIAH-----------------VEQQQPFQGAPASSKAL 704
Cdd:PHA03379 714 QPMEG---PLVPERWMfqgatlsQSVRPGVAQSQyfdlplTQPINHgapaahflhqppmegpwVPEQWMFQGAPPSQGTD 790
|
...
gi 257900510 705 QTQ 707
Cdd:PHA03379 791 VVQ 793
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
555-667 |
9.27e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.28 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 555 PKGQAPVPQELPVPQELPVPQelpVPQEVPVPQEIPVPQEIPVPqELPVPQELPVPQELPVPQELPVPQELPVPQELPVP 634
Cdd:PRK10819 42 PAPAQPISVTMVAPADLEPPQ---AVQPPPEPVVEPEPEPEPIP-EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQP 117
|
90 100 110
....*....|....*....|....*....|...
gi 257900510 635 QELPVPQELPVPLEFQEVQQAQAVGWRAPKVPP 667
Cdd:PRK10819 118 KREVKPVEPRPASPFENTAPARPTSSTATAAAS 150
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
11-291 |
9.50e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 11 SSPPESPVPAVHSRPTVLMRAPPA----SSRAPPVPWDPPPVDLQAPMAAWQAPQP---AWEAPEGQLPAPVAQLAQPPG 83
Cdd:PRK07764 427 AAPQPAPAPAPAPAPPSPAGNAPAggapSPPPAAAPSAQPAPAPAAAPEPTAAPAPappAAPAPAAAPAAPAAPAAPAGA 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 84 LGAPMVQ----------------------------------------APPLGGGMAKPPTPGVLM--------------- 108
Cdd:PRK07764 507 DDAATLRerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlgfsTGGLARRFASPGNAEVLVtalaeelggdwqvea 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 109 VHQPPPGAPMAQSSTPGVLMLHPSVTGAPLAHPPPPGTPMTHPPGTSMAHPPPPPPPPPPPPPPGTPMTHPPPPGTPMGH 188
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257900510 189 HPPPGN-----PMTHPPPGNPMVHPLTHGAPMVHGGPHGTPMPHVPITGTPIAQQPTPGVlmAQQLTPGVLMVQPPAPGA 263
Cdd:PRK07764 667 DGWPAKaggaaPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQ--GASAPSPAADDPVPLPPE 744
|
330 340
....*....|....*....|....*...
gi 257900510 264 PMVQPPPQAALMTQPAPSITPMAKPPGP 291
Cdd:PRK07764 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAA 772
|
|
| |
