|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
357-388 |
3.61e-11 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 58.35 E-value: 3.61e-11
10 20 30
....*....|....*....|....*....|..
gi 124256489 357 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 388
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-442 |
1.22e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 253 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 332
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 333 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 410
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 124256489 411 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 442
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
480-724 |
1.62e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 480 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 558
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 559 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 637
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 638 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 717
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 124256489 718 FELSSGK 724
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
233-686 |
1.82e-06 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 51.56 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 233 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 312
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 313 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 372
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 373 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 449
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 450 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 527
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 528 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 596
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 597 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFGP---ENCTSWI-KFAELETILGDIDRARAIYELAISQP 670
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGLlkfPDSTLYKeKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 124256489 671 RLDMPEVLWKSYIDFE 686
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
256-288 |
1.35e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.84 E-value: 1.35e-04
10 20 30
....*....|....*....|....*....|...
gi 124256489 256 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 288
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
357-388 |
2.03e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.07 E-value: 2.03e-04
10 20 30
....*....|....*....|....*....|...
gi 124256489 357 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 388
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
654-688 |
1.84e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 36.37 E-value: 1.84e-03
10 20 30
....*....|....*....|....*....|....*
gi 124256489 654 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 688
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
256-661 |
7.37e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 256 KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 335
Cdd:TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 336 WMEWQPEEQAWH-SYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDeHMDE 413
Cdd:TIGR02917 559 AAELNPQEIEPAlALAQYYLGKGQLKKALAILNEAADAAPDSPEaWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 414 HLYVAFAkfEENQKEFERVRVIYKYALDRISKQD-AQELFKNYTIFEKKFgdrrgiEDIIVSKRRFQYEEEVKANPHNYD 492
Cdd:TIGR02917 638 LLLLADA--YAVMKNYAKAITSLKRALELKPDNTeAQIGLAQLLLAAKRT------ESAKKIAKSLQKQHPKAALGFELE 709
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 493 AWFdYLRLVESDAEAEAVREVYERAIANVPPIQEKR----------------HW--KRYIYLWINYALYEELEA-KDPER 553
Cdd:TIGR02917 710 GDL-YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRallasgntaeavktleAWlkTHPNDAVLRTALAELYLAqKDYDK 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 554 TRQVYQASLELIPHKKFTFAKMWILYAQFEiRQKNLSLARRALGTSIGKCPknkLFKVYIELELQLREFDRCRKLYEKFL 633
Cdd:TIGR02917 789 AIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAV 864
|
410 420
....*....|....*....|....*...
gi 124256489 634 EFGPENCTSWIKFAELETILGDIDRARA 661
Cdd:TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HAT |
pfam02184 |
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ... |
357-388 |
3.61e-11 |
|
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.
Pssm-ID: 111114 [Multi-domain] Cd Length: 32 Bit Score: 58.35 E-value: 3.61e-11
10 20 30
....*....|....*....|....*....|..
gi 124256489 357 KEVDRARTIYERFVLVHPDVKNWIKYARFEEK 388
Cdd:pfam02184 1 KEIDRARGIYERFVHVHPEVQNWIKWARFEEE 32
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-442 |
1.22e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 253 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 332
Cdd:COG2956 53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 333 FERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEffgDEH 410
Cdd:COG2956 133 LERLLKLGPENaHAYCELAELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALE---QDP 209
|
170 180 190
....*....|....*....|....*....|..
gi 124256489 411 MDEHLYVAFAKFEENQKEFERVRVIYKYALDR 442
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
480-724 |
1.62e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 480 YEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIAnvppiqekRHWKRYIYLwinYALYEE-LEAKDPERTRQVY 558
Cdd:COG2956 31 LEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE--------RDPDRAEAL---LELAQDyLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 559 QASLELIPHKkftfAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGP 637
Cdd:COG2956 100 EKLLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELaELYLEQGDYDEAIEALEKALKLDP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 638 ENCTSWIKFAELETILGDIDRARAIYELAISQpRLDMPEVLwKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 717
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPAL-PRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253
|
....*..
gi 124256489 718 FELSSGK 724
Cdd:COG2956 254 LLERKEG 260
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
479-688 |
5.30e-07 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 53.48 E-value: 5.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 479 QYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERaIANVPPIQEkRHWKRYIYLWINYALYEELEAKDPERTRQVY 558
Cdd:COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQ-LSSPFPIME-HAWRLYMSGELARKDFRSVESLFGRCLKKSL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 559 QASLeliphkkftfakmWILYAQFeIRQKNLSLARRAlgtsigkcpKNKLFKVYiELELQLREFDRCRK----LYEKFLE 634
Cdd:COG5107 108 NLDL-------------WMLYLEY-IRRVNNLITGQK---------RFKIYEAY-EFVLGCAIFEPQSEnywdEYGLFLE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 124256489 635 FGPENCTsWikfaELETilgDIDRARAIYELAISQPrLDMPEVLWKSYIDFEIE 688
Cdd:COG5107 164 YIEELGK-W----EEQQ---RIDKIRNGYMRALQTP-MGNLEKLWKDYENFELE 208
|
|
| RNA14 |
COG5107 |
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ... |
233-686 |
1.82e-06 |
|
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];
Pssm-ID: 227438 [Multi-domain] Cd Length: 660 Bit Score: 51.56 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 233 DNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNqF 312
Cdd:COG5107 33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD-L 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 313 WYKY-TYMEEMLGNVAGAR-----QVFERWMEWQPEEQA----WHSYINFELRYKE---------VDRARTIYERFVLV- 372
Cdd:COG5107 112 WMLYlEYIRRVNNLITGQKrfkiyEAYEFVLGCAIFEPQsenyWDEYGLFLEYIEElgkweeqqrIDKIRNGYMRALQTp 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 373 -HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGdehmdehlyvAFAKFEENQKEFERVRVIYKYALDRISK--QDAQ 449
Cdd:COG5107 192 mGNLEKLWKDYENFELELNKITARKFVGETSPIYMS----------ARQRYQEIQNLTRGLSVKNPINLRTANKaaRTSD 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 450 ELFKNYTIFEKKFGDRRGiEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEK-- 527
Cdd:COG5107 262 SNWLNWIKWEMENGLKLG-GRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFls 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 528 RHWK--------RYIYLWINYAL---YEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARral 596
Cdd:COG5107 341 EYYElvndeeavYGCFDKCTQDLkrkYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR--- 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 597 gTSIGKCPKNKLF--KVYIELELQLREFDRCRKLYEKFLEFGP---ENCTSWI-KFAELETILGDIDRARAIYELAISQP 670
Cdd:COG5107 418 -KLFIKLRKEGIVghHVYIYCAFIEYYATGDRATAYNIFELGLlkfPDSTLYKeKYLLFLIRINDEENARALFETSVERL 496
|
490
....*....|....*.
gi 124256489 671 RLDMPEVLWKSYIDFE 686
Cdd:COG5107 497 EKTQLKRIYDKMIEYE 512
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
249-442 |
3.09e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 249 AQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG 328
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 329 ARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWI-KYARFEEKHAYFAHARKVYERAVEff 406
Cdd:COG2956 163 AIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALpRLAELYEKLGDPEEALELLRKALE-- 240
|
170 180 190
....*....|....*....|....*....|....*.
gi 124256489 407 gdEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDR 442
Cdd:COG2956 241 --LDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
|
|
| COG5191 |
COG5191 |
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ... |
219-356 |
7.95e-06 |
|
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];
Pssm-ID: 227518 [Multi-domain] Cd Length: 435 Bit Score: 49.19 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 219 ELNDYK-------------LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARS---------------------- 263
Cdd:COG5191 15 ELEDLKekgifspdelrriVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVkrkkvgkkasfsdmsipqkkif 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 264 IYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQPE 342
Cdd:COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWiYCCAFELFEIANIESSRAMFLKGLRMNSR 174
|
170
....*....|....*
gi 124256489 343 -EQAWHSYINFELRY 356
Cdd:COG5191 175 sPRIWIEYFRMELMY 189
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
245-368 |
1.12e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.80 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 124256489 325 NVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYER 368
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
245-375 |
1.20e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.95 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 124256489 325 NVAGARQVFERWMEWQPEE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 375
Cdd:COG4783 87 DYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
257-519 |
2.80e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 257 EIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERW 336
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 337 MEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVEFFGDehmDEH 414
Cdd:COG2956 103 LELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPD---CAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 415 LYVAFAKFEENQKEFERVRVIYKYALdRISKQDAQELFKNYTIFEKKfGDRRGIEDIIvskrrfqyeEEVKANPHNYDAW 494
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERAL-EQDPDYLPALPRLAELYEKL-GDPEEALELL---------RKALELDPSDDLL 248
|
250 260
....*....|....*....|....*
gi 124256489 495 FDYLRLVESDAEAEAVREVYERAIA 519
Cdd:COG2956 249 LALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
484-707 |
3.94e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 484 VKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPpiqekrhwkRYIYLWINYAL-YEELeaKDPERTRQVYQASL 562
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---------DDAEALYNLGLaYLRL--GRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 563 ELIPHkkftFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCT 641
Cdd:COG0457 70 ELDPD----DAEALNNLGLALQALGRYEEALEDYDKALELDPDDaEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124256489 642 SWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQ 707
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
181-350 |
4.74e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.91 E-value: 4.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 181 NKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLrKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQR 260
Cdd:COG3914 52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE-ALALYRRALALNPDNAEALFNLGNLLLALGRLEE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 261 ARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQ 340
Cdd:COG3914 131 ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
170
....*....|
gi 124256489 341 PEEQAWHSYI 350
Cdd:COG3914 211 PDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
245-346 |
1.17e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|..
gi 124256489 325 NVAGARQVFERWMEWQPEEQAW 346
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPA 121
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
256-288 |
1.35e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.84 E-value: 1.35e-04
10 20 30
....*....|....*....|....*....|...
gi 124256489 256 KEIQRARSIYERALDVDYRNITLWLKYAEMEMK 288
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
245-343 |
1.80e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 245 WIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
90
....*....|....*....
gi 124256489 325 NVAGARQVFERWMEWQPEE 343
Cdd:COG4783 121 RPDEAIAALEKALELDPDD 139
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
357-388 |
2.03e-04 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 39.07 E-value: 2.03e-04
10 20 30
....*....|....*....|....*....|...
gi 124256489 357 KEVDRARTIYERFVLVHP-DVKNWIKYARFEEK 388
Cdd:smart00386 1 GDIERARKIYERALEKFPkSVELWLKYAEFEER 33
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
182-375 |
3.09e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.21 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 182 KAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 261
Cdd:COG3914 18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 262 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP 341
Cdd:COG3914 98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177
|
170 180 190
....*....|....*....|....*....|....*
gi 124256489 342 EE-QAWHSYINFELRYKEVDRARTIYERFVLVHPD 375
Cdd:COG3914 178 DNaEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
504-704 |
6.11e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 504 DAEAEAVREVYERAIANVPPIQEKR--HWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQ 581
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAEleAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 582 FEIRQKNLSLARRALGTSIGKCPKNKLFKVYI-ELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRAR 660
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLgNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 124256489 661 AIYELAIS-QPrlDMPEVlWKSYIDFEIEQEETERTRNLYRRLLQ 704
Cdd:COG3914 167 AALRRALElDP--DNAEA-LNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| HAT |
smart00386 |
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ... |
654-688 |
1.84e-03 |
|
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Pssm-ID: 214642 [Multi-domain] Cd Length: 33 Bit Score: 36.37 E-value: 1.84e-03
10 20 30
....*....|....*....|....*....|....*
gi 124256489 654 GDIDRARAIYELAISQPRLDMPevLWKSYIDFEIE 688
Cdd:smart00386 1 GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
229-397 |
2.19e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 229 KTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPR 308
Cdd:COG0457 29 EDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 309 VNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEE 387
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
170
....*....|
gi 124256489 388 KHAYFAHARK 397
Cdd:COG0457 189 ALAAAEVLLA 198
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
265-379 |
2.72e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQ 344
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|....*.
gi 124256489 345 AWHSYI-NFELRYKEVDRARTIYERFVLVHPDVKNW 379
Cdd:COG4235 86 EALYLLgLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
253-342 |
2.84e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 253 ESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNiWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQV 332
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 124256489 333 FERWMEWQPE 342
Cdd:COG3063 82 LERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
255-341 |
5.57e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 255 LKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFE 334
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
....*..
gi 124256489 335 RWMEWQP 341
Cdd:COG5010 147 RALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
256-661 |
7.37e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 256 KEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFER 335
Cdd:TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 336 WMEWQPEEQAWH-SYINFELRYKEVDRARTIYERFVLVHPDVKN-WIKYARFEEKHAYFAHARKVYERAVEFFGDeHMDE 413
Cdd:TIGR02917 559 AAELNPQEIEPAlALAQYYLGKGQLKKALAILNEAADAAPDSPEaWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALA 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 414 HLYVAFAkfEENQKEFERVRVIYKYALDRISKQD-AQELFKNYTIFEKKFgdrrgiEDIIVSKRRFQYEEEVKANPHNYD 492
Cdd:TIGR02917 638 LLLLADA--YAVMKNYAKAITSLKRALELKPDNTeAQIGLAQLLLAAKRT------ESAKKIAKSLQKQHPKAALGFELE 709
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 493 AWFdYLRLVESDAEAEAVREVYERAIANVPPIQEKR----------------HW--KRYIYLWINYALYEELEA-KDPER 553
Cdd:TIGR02917 710 GDL-YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRallasgntaeavktleAWlkTHPNDAVLRTALAELYLAqKDYDK 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124256489 554 TRQVYQASLELIPHKKFTFAKMWILYAQFEiRQKNLSLARRALGTSIGKCPknkLFKVYIELELQLREFDRCRKLYEKFL 633
Cdd:TIGR02917 789 AIKHYQTVVKKAPDNAVVLNNLAWLYLELK-DPRALEYAERALKLAPNIPA---ILDTLGWLLVEKGEADRALPLLRKAV 864
|
410 420
....*....|....*....|....*...
gi 124256489 634 EFGPENCTSWIKFAELETILGDIDRARA 661
Cdd:TIGR02917 865 NIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| |
