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Conserved domains on  [gi|9506883|ref|NP_062063|]
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membrane cofactor protein precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 61-294 3.23e-41

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 145.18  E-value: 3.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883    61 HYAIGEIIEYTCKKGYLYLSPYPMTAICQPNhTWVPISDhgCIKVQCTMLQDPSFGKVHYidGRFSWGARVKYTCMNGYY 140
Cdd:PHA02927  43 NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGT-GWTLFNQ--CIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYQ 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   141 MVGMSVLQCELNGNGDAFWNGHPPSCKKVYCLPPPKIKNGTHTFTDiKVFKYHEAVIYSCdpNPGpdkFSLVGPSMLFCA 220
Cdd:PHA02927 118 LIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC--NSG---YSLIGNSGVLCS 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9506883   221 GhNTWSsDPPECKVVKCPFPVLQNGRQISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLK 294
Cdd:PHA02927 192 G-GEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKCVR 263
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 61-294 3.23e-41

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 145.18  E-value: 3.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883    61 HYAIGEIIEYTCKKGYLYLSPYPMTAICQPNhTWVPISDhgCIKVQCTMLQDPSFGKVHYidGRFSWGARVKYTCMNGYY 140
Cdd:PHA02927  43 NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGT-GWTLFNQ--CIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYQ 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   141 MVGMSVLQCELNGNGDAFWNGHPPSCKKVYCLPPPKIKNGTHTFTDiKVFKYHEAVIYSCdpNPGpdkFSLVGPSMLFCA 220
Cdd:PHA02927 118 LIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC--NSG---YSLIGNSGVLCS 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9506883   221 GhNTWSsDPPECKVVKCPFPVLQNGRQISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLK 294
Cdd:PHA02927 192 G-GEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKCVR 263
Sushi pfam00084
Sushi repeat (SCR repeat);
107-166 8.95e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 59.44  E-value: 8.95e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883    107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSC 166
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGT----WSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 107-167 4.00e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 4.00e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 9506883  107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSCK 167
Cdd:cd00033   1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGG----WSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 107-166 6.20e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.76  E-value: 6.20e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883     107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSC 166
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGT----WSPPPPTC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 61-294 3.23e-41

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 145.18  E-value: 3.23e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883    61 HYAIGEIIEYTCKKGYLYLSPYPMTAICQPNhTWVPISDhgCIKVQCTMLQDPSFGKVHYidGRFSWGARVKYTCMNGYY 140
Cdd:PHA02927  43 NYNIGDTIEYLCLPGYRKQKMGPIYAKCTGT-GWTLFNQ--CIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYQ 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   141 MVGMSVLQCELNGNGDAFWNGHPPSCKKVYCLPPPKIKNGTHTFTDiKVFKYHEAVIYSCdpNPGpdkFSLVGPSMLFCA 220
Cdd:PHA02927 118 LIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYE-DFYTDGSVVTYSC--NSG---YSLIGNSGVLCS 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9506883   221 GhNTWSsDPPECKVVKCPFPVLQNGRQISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLK 294
Cdd:PHA02927 192 G-GEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKCVR 263
PHA02639 PHA02639
EEV host range protein; Provisional
 100-294 8.28e-28

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 110.52  E-value: 8.28e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   100 HGCIKVQCTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgDAFWNGHPPSCKKVYCLPPPKIKN 179
Cdd:PHA02639  15 HGVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKN-NAIWSNKAPFCMLKECNDPPSIIN 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   180 GThTFTDIKVFKYHEAVIYSCDPNPGPdKFSLVGPSMLFCAGHNTWSSDPPECKVVKCPFPVLQNGR-QISRTEKKFSYQ 258
Cdd:PHA02639  94 GK-IYNKREMYKVGDEIYYVCNEHKGV-QYSLVGNEKITCIQDKSWKPDPPICKMINCRFPALQNGYiNGIPSNKKFYYK 171

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 9506883   259 ALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLK 294
Cdd:PHA02639 172 TRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTCVR 207
PHA02817 PHA02817
EEV Host range protein; Provisional
 165-300 6.06e-22

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 92.70  E-value: 6.06e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   165 SCKKVYCLPPPKIKNGtHTFTDIKVFKYHEAVIYSCDPNPGPDKFSLVGPSMLFCAGHNTWSSDPPECKVVKCPFPVLQN 244
Cdd:PHA02817  18 LCDLNKCCYPPSIKNG-YIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPALQN 96

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 9506883   245 GRQIS-RTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLKGPKPHS 300
Cdd:PHA02817  97 GFVNGiPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSRDNITYN 153
PHA02831 PHA02831
EEV host range protein; Provisional
 120-294 9.20e-20

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 87.74  E-value: 9.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   120 YIDGRFSWGARVKYTCMNGYYMVgmsVLQCElNGNgdafWNGHPPSCKKVYCLPPPKIKNGTHTFTDIKvFKYHEAVIYS 199
Cdd:PHA02831  35 YENKVYEENENLEYKCNNNFDKV---FVTCN-NGS----WSTKNMCIGKRNCKDPVTILNGYIKNKKDQ-YSFGDSVTYA 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   200 CDPNPgPDKFSLVGPSMLFCAgHNTWSSDPPECKVVKCPFPVLQNGRqISRTEKKFSYQALVLFQCLEGFYMEGSSMVVC 279
Cdd:PHA02831 106 CKVNK-LEKYSIVGNETVKCI-NKQWVPKYPVCKLIRCKYPALQNGF-LNVFEKKFYYGDIVNFKCKKGFILLGSSVSTC 182

                        170
                 ....*....|....*
gi 9506883   280 GAKSSWEPSIPQCLK 294
Cdd:PHA02831 183 DINSIWYPGIPKCVK 197
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 101-298 1.59e-14

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 72.76  E-value: 1.59e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   101 GCIKVQCTMLQDPSFGKVH-----YIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNGDAFWNghppSCKKVYCLPPP 175
Cdd:PHA02927  15 GCVLSCCTIPSRPINMKFKnsvetDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTLFN----QCIKRRCPSPR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   176 KIKNGThtfTDIKVFKYHEAVIYSCdpNPGpdkFSLVGPSMLFC----AGHNTWSSDPPECKVVKCPFP-VLQNGRQiSR 250
Cdd:PHA02927  91 DIDNGQ---LDIGGVDFGSSITYSC--NSG---YQLIGESKSYCelgsTGSMVWNPEAPICESVKCQSPpSISNGRH-NG 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 9506883   251 TEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQCLKGPKP 298
Cdd:PHA02927 162 YEDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKCPHP 209
Sushi pfam00084
Sushi repeat (SCR repeat);
107-166 8.95e-12

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 59.44  E-value: 8.95e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883    107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSC 166
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGT----WSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 107-167 4.00e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.78  E-value: 4.00e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 9506883  107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSCK 167
Cdd:cd00033   1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGG----WSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 107-166 6.20e-09

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 51.76  E-value: 6.20e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883     107 CTMLQDPSFGKVHYIDGRFSWGARVKYTCMNGYYMVGMSVLQCELNGNgdafWNGHPPSC 166
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGT----WSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 171-233 1.39e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.54  E-value: 1.39e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9506883  171 CLPPPKIKNGTHTFTDiKVFKYHEAVIYSCDPNpgpdkFSLVGPSMLFCAGHNTWSSDPPECK 233
Cdd:cd00033   1 CPPPPVPENGTVTGSK-GSYSYGSTVTYSCNEG-----YTLVGSSTITCTENGGWSPPPPTCE 57
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 237-292 3.29e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 49.38  E-value: 3.29e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 9506883  237 CPFP-VLQNGRqISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQC 292
Cdd:cd00033   1 CPPPpVPENGT-VTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
237-292 8.34e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 8.34e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 9506883    237 CPFP-VLQNGRqISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQC 292
Cdd:pfam00084   1 CPPPpDIPNGK-VSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 237-292 2.06e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 47.14  E-value: 2.06e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 9506883     237 CPFP-VLQNGRqISRTEKKFSYQALVLFQCLEGFYMEGSSMVVCGAKSSWEPSIPQC 292
Cdd:smart00032   1 CPPPpDIENGT-VTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
171-232 4.21e-07

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 46.34  E-value: 4.21e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9506883    171 CLPPPKIKNGTHTFTDiKVFKYHEAVIYSCDPNpgpdkFSLVGPSMLFCAGHNTWSSDPPEC 232
Cdd:pfam00084   1 CPPPPDIPNGKVSATK-NEYNYGASVSYECDPG-----YRLVGSPTITCQEDGTWSPPFPEC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 171-232 4.93e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 46.37  E-value: 4.93e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9506883     171 CLPPPKIKNGTHTFTDiKVFKYHEAVIYSCDPNpgpdkFSLVGPSMLFCAGHNTWSSDPPEC 232
Cdd:smart00032   1 CPPPPDIENGTVTSSS-GTYSYGDTVTYSCDPG-----YTLIGSSTITCLENGTWSPPPPTC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 43-96 1.36e-04

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 39.37  E-value: 1.36e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 9506883   43 CEPPPPFEAMELKDkPKPHYAIGEIIEYTCKKGYLYLSpyPMTAICQPNHTWVP 96
Cdd:cd00033   1 CPPPPVPENGTVTG-SKGSYSYGSTVTYSCNEGYTLVG--SSTITCTENGGWSP 51
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 147-294 3.59e-04

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 42.00  E-value: 3.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9506883   147 LQCElNGNGDAFWNgHPPSCKKVYClPPPKIKNGTHTFTDIKvFKYHEAVIYSCDPNpgpdkFSLVGPSMLFCAGhNTWS 226
Cdd:PHA02954 108 FRCE-EKNGNTSWN-DTVTCPNAEC-QPLQLEHGSCQPVKEK-YSFGEHITINCDVG-----YEVIGASYISCTA-NSWN 177

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 9506883   227 SdPPECKVvKCPFPVLQNGRQISRTekkFSYQALVLFQCLEGFYMEGSSMVVCgAKSSWEPSIPQCLK 294
Cdd:PHA02954 178 V-IPSCQQ-KCDIPSLSNGLISGST---FSIGGVIHLSCKSGFTLTGSPSSTC-IDGKWNPVLPICVR 239
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 43-96 1.00e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 36.74  E-value: 1.00e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 9506883      43 CEPPPPFEAMELKDKPKPhYAIGEIIEYTCKKGYlYLSPyPMTAICQPNHTWVP 96
Cdd:smart00032   1 CPPPPDIENGTVTSSSGT-YSYGDTVTYSCDPGY-TLIG-SSTITCLENGTWSP 51
Sushi pfam00084
Sushi repeat (SCR repeat);
43-96 2.76e-03

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 35.55  E-value: 2.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 9506883     43 CEPPPPFEAMELKdKPKPHYAIGEIIEYTCKKGYLYLSpyPMTAICQPNHTWVP 96
Cdd:pfam00084   1 CPPPPDIPNGKVS-ATKNEYNYGASVSYECDPGYRLVG--SPTITCQEDGTWSP 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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