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Conserved domains on  [gi|51243049|ref|NP_067069|]
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lymphocyte antigen 6 complex locus protein G6d precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TFP_LU_ECD_Ly6G6d cd23547
extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) ...
 20-105 2.07e-46

extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) and similar proteins; Ly6G6d (also called protein Ly6-D, or megakaryocyte-enhanced gene transcript 1 protein) is a glycosylated, GPI-anchored, cell surface molecule, located on filopodia, which could act as cell receptor with potential roles in signaling or cell-cell interactions. Ly6G6d contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


:

Pssm-ID: 467077  Cd Length: 92  Bit Score: 145.45  E-value: 2.07e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51243049  20 NRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLP-----GNPPVTLIHQHPACVAAHHCNQVETESVGDVTYPAHR 94
Cdd:cd23547   2 NRMRCYDCGGDPSGSCKETVITCGEGERCGFLEQRPQPekefpGNPTVTLVHHRPACVAVHRCNQVEIESVGDVTYTTHR 81

                        90
                ....*....|.
gi 51243049  95 DCYLGDLCNSA 105
Cdd:cd23547  82 DCCLGDLCNGA 92
 
Name Accession Description Interval E-value
TFP_LU_ECD_Ly6G6d cd23547
extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) ...
 20-105 2.07e-46

extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) and similar proteins; Ly6G6d (also called protein Ly6-D, or megakaryocyte-enhanced gene transcript 1 protein) is a glycosylated, GPI-anchored, cell surface molecule, located on filopodia, which could act as cell receptor with potential roles in signaling or cell-cell interactions. Ly6G6d contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467077  Cd Length: 92  Bit Score: 145.45  E-value: 2.07e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51243049  20 NRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLP-----GNPPVTLIHQHPACVAAHHCNQVETESVGDVTYPAHR 94
Cdd:cd23547   2 NRMRCYDCGGDPSGSCKETVITCGEGERCGFLEQRPQPekefpGNPTVTLVHHRPACVAVHRCNQVEIESVGDVTYTTHR 81

                        90
                ....*....|.
gi 51243049  95 DCYLGDLCNSA 105
Cdd:cd23547  82 DCCLGDLCNGA 92
 
Name Accession Description Interval E-value
TFP_LU_ECD_Ly6G6d cd23547
extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) ...
 20-105 2.07e-46

extracellular domain (ECD) found in lymphocyte antigen 6 complex locus protein G6d (Ly6G6d) and similar proteins; Ly6G6d (also called protein Ly6-D, or megakaryocyte-enhanced gene transcript 1 protein) is a glycosylated, GPI-anchored, cell surface molecule, located on filopodia, which could act as cell receptor with potential roles in signaling or cell-cell interactions. Ly6G6d contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467077  Cd Length: 92  Bit Score: 145.45  E-value: 2.07e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 51243049  20 NRMRCYNCGGSPSSSCKEAVTTCGEGRPQPGLEQIKLP-----GNPPVTLIHQHPACVAAHHCNQVETESVGDVTYPAHR 94
Cdd:cd23547   2 NRMRCYDCGGDPSGSCKETVITCGEGERCGFLEQRPQPekefpGNPTVTLVHHRPACVAVHRCNQVEIESVGDVTYTTHR 81

                        90
                ....*....|.
gi 51243049  95 DCYLGDLCNSA 105
Cdd:cd23547  82 DCCLGDLCNGA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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