|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-1038 |
9.96e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 98.98 E-value: 9.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLsvaldggrspdvlslesrnktnEKLIAHLNIQVD 278
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL----------------------RLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 279 FLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCqelTEIDQLAQQLERHKEEvLETADKELGEAKKEIKRKLSEM 358
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELE---AQLEELESKLDELAEE-LAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 359 QDLEETMAKLQLELNLCQKEKERLSDEllvksdletvVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDR 438
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSK----------VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 439 SPSRLDTFLKGIEEErdyyKKELERLQHiiQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKY 518
Cdd:TIGR02168 431 EEAELKELQAELEEL----EEELEELQE--ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 519 mediQSNVKLLTAERDKLSVLYNEAQEELSALRKestqttaphnivslMEKEKELALSDLRR--IMAEKEALREKLEHIE 596
Cdd:TIGR02168 505 ----SEGVKALLKNQSGLSGILGVLSELISVDEG--------------YEAAIEAALGGRLQavVVENLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 597 EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAgdsshqktEVNSLRIVNEQL 676
Cdd:TIGR02168 567 QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL--------VVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 677 QRSvdDYQHRLSIKRGELESAQAqikILEEKIDELNLKMTSQDEEahvmkktigvidkekdflqetVDEKTEKIANLQEN 756
Cdd:TIGR02168 639 KKL--RPGYRIVTLDGDLVRPGG---VITGGSAKTNSSILERRRE---------------------IEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 757 LANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQE 836
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 837 ISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRF-------QMLHNRAEDWEVKAHQAEGESSSVRL 909
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerlESLERRIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 910 ELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKD 989
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 50083279 990 IMTQQLNSKNLEF-ERVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 1038
Cdd:TIGR02168 933 GLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
1.71e-18 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 80.30 E-value: 1.71e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 50083279 81 ENNELYLELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-854 |
5.98e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 5.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 77 RLSRENNELYLELMKLREHS-DQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERIQQLQeKNLHAVVQ 155
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEElREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ-KELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 156 TPGGKKRSIAFRRQRMQIDEPvppsevssypvpqpDDPYIADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIE 235
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLER--------------QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 236 LREREIErlsvaldggrspdvlSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKL 315
Cdd:TIGR02168 362 ELEAELE---------------ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 316 CQELTE--IDQLAQQLERHKEEV------LETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELL 387
Cdd:TIGR02168 427 LKKLEEaeLKELQAELEELEEELeelqeeLERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 388 VKSDLETVVHQLEQEKQRLSKKVE---------SFAVTERQLTLEVE-------------------RMRLEHGIKRRDRS 439
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELISvdegyeaaiEAALGGRLQAVVVEnlnaakkaiaflkqnelgrVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 440 PSRLDTFLKGIEE------ERDYYKKELER-LQHIIQRRSCSTSY-SAREKSSIFRTPE-----KGDYNSEIHQITRERD 506
Cdd:TIGR02168 587 QGNDREILKNIEGflgvakDLVKFDPKLRKaLSYLLGGVLVVDDLdNALELAKKLRPGYrivtlDGDLVRPGGVITGGSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 507 -------ELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLR 579
Cdd:TIGR02168 667 ktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----------LSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 580 RIMAEKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVagds 659
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKEL----TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL---- 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 660 shqKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFL 739
Cdd:TIGR02168 809 ---RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 740 QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHK-ELDEVGRSREIAFK 818
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIED 965
|
810 820 830
....*....|....*....|....*....|....*.
gi 50083279 819 ENRRLQDDLATMARENQEISLELEAAVQEKEEMKSR 854
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER 1001
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-850 |
4.68e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 4.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNIQVD 278
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 279 FLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLE---RHKEEVLETADKELGEAKKEIKRKL 355
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleiKKQEWKLEQLAADLSKYEQELYDLK 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 356 SEMQDLEETMAKLQLELNLCQKEKERLSD--------ELLVKSDLETV---VHQLEQEKQRLSKKVES-------FAVTE 417
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEErvrggravEEVLKASIQGVhgtVAQLGSVGERYATAIEVaagnrlnNVVVE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 418 RQLT------------------LEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKK--------------ELERlQ 465
Cdd:TIGR02169 556 DDAVakeaiellkrrkagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtlvvediEAAR-R 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 466 HIIQRRSCSTSYSAREKSSI----FRTPEKGDYNSeihqiTRERDELQRM---LERFEKYMEDIQSNVKLLTAERDKLSV 538
Cdd:TIGR02169 635 LMGKYRMVTLEGELFEKSGAmtggSRAPRGGILFS-----RSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQ 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 539 LYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRR----IMAEKEALREKLEHIEEVSLFGKSELEKTIEHLt 614
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQeienVKSELKELEARIEELEEDLHKLEEALNDLEARL- 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 615 cvNH----QLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIK 690
Cdd:TIGR02169 789 --SHsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 691 RGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMkIM 770
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EE 945
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 771 ISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVgrsrEIAFKEnrrLQDDLATMARENQEISLELEAAVQEKEE 850
Cdd:TIGR02169 946 IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEV----LKRLDE---LKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
686-966 |
2.59e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 2.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 686 RLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTE-KIANLQENLANKEKAV 764
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 765 AQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 844
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 845 VQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRER 924
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 50083279 925 VELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDE 966
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
635-1116 |
7.03e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 7.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 635 KETIESLENKLKVQAQKFSHVagdsshqKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLK 714
Cdd:COG1196 245 EAELEELEAELEELEAELAEL-------EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 715 MTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 794
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 795 LRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEK 874
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 875 ENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMS 954
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 955 RLEEELRHQEDEKATVLNDLSSLRElcikLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLE 1034
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKI----RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1035 SLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEM 1114
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
..
gi 50083279 1115 RR 1116
Cdd:COG1196 714 EE 715
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
744-979 |
2.03e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 744 DEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 823
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 824 QDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGE 903
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 50083279 904 SSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRE 979
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
675-968 |
2.12e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 675 QLQRSVDDYQHRLSIKRgeLESAQAQIKILEEKIDELNLKMTSQDEEahvmkktIGVIDKEKDFLQETVDEKTEKIANLQ 754
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 755 ENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMAREN 834
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 835 QEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSI 914
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 50083279 915 DTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKA 968
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
566-1130 |
5.18e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 566 LMEKEKELALSDLRRIMAEKEALREKLEHIE---EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLE 642
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 643 NKLKVQAQKfshvagdsshqktevnslrivNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEA 722
Cdd:COG1196 302 QDIARLEER---------------------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 723 HVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAA 802
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 803 HKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYI-TEVSRWESLMAAKEKENQDLLD 881
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 882 RFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEI---------QEHINAHHAYESQISSMAKA 952
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 953 MSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMtqqlnsKNLEFERVVVELEnvkSESDLLKKQLSNERHTVKN 1032
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA------VTLAGRLREVTLE---GEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1033 LESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENtmLRAKVAQLQTDYDALKRQISTERYERERAIQ 1112
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE--EELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570
....*....|....*...
gi 50083279 1113 EMRRHGLATPPLSSTLRS 1130
Cdd:COG1196 750 EEALEELPEPPDLEELER 767
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
492-853 |
5.26e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 5.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 492 GDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLsvlyneaqEELSALRKESTQTTAphnivSLMEKEK 571
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALLKEKREYEG-----YELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 572 ELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHLTCVNHQL--------ESEKYELKSKVLIMKETIESLEN 643
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEE----ISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 644 KLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQhrlsikrGELESAQAQIKILEEKIDELNLKMTSQDEEAH 723
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-------KRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 724 VMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAH 803
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 50083279 804 KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKS 853
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
282-814 |
6.06e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.54 E-value: 6.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 282 QANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEvLETADKELGEAKKEIKRKLSEMQDL 361
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE-IEELEKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 362 EETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKkvesfaVTERQLTLEVERMRLEHGIKRRDRSPS 441
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE------IEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 442 RLDTFLKGIEEERDYY---KKELERLQHIIQRRSCSTSYSAREKSsifRTPEKGDYNSEI-----HQITRERDELQRMLE 513
Cdd:PRK03918 339 RLEELKKKLKELEKRLeelEERHELYEEAKAKKEELERLKKRLTG---LTPEKLEKELEElekakEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 514 RFEKYMEDIQSNVKLLTAERDKLSV------------LYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRI 581
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGKCPVcgrelteehrkeLLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 582 MAEKEALREKLEHIEEVSLFGKSELEKTIEHLtcvnHQLESEKYELKSKVLIMKETIES---LENKLKVQAQKFSHVAGD 658
Cdd:PRK03918 496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEY----EKLKEKLIKLKGEIKSLKKELEKleeLKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 659 SSHQKTEV-----NSLRIVNEQLQRSVDDYQHRLSIK--RGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGv 731
Cdd:PRK03918 572 LAELLKELeelgfESVEELEERLKELEPFYNEYLELKdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE- 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 732 iDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREinslRRQLDAAHKELDEVGR 811
Cdd:PRK03918 651 -ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA----KKELEKLEKALERVEE 725
|
...
gi 50083279 812 SRE 814
Cdd:PRK03918 726 LRE 728
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
208-855 |
8.51e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.21 E-value: 8.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 208 ELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpdvLSLESRNKTNEKLIAHLNIQVDFLQQANKDL 287
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRS---ILVDFEEASGKKIYEHDSMSTMHFRSLGSAI 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 288 EKRIRELMETKETVTSEVVNLSNKNEKLCQE-LTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMA 366
Cdd:pfam15921 223 SKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 367 KLQlelnlcqkEKERLSDELLVK--SDLETVVHQLEQE----KQRLSKKVESFavtERQLTL--------EVERMRLEHG 432
Cdd:pfam15921 303 IIQ--------EQARNQNSMYMRqlSDLESTVSQLRSElreaKRMYEDKIEEL---EKQLVLanselteaRTERDQFSQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 433 IKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSsifrtpekgDYNSEIHQITRERDELQRML 512
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD---------DRNMEVQRLEALLKAMKSEC 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 513 E-RFEKYMEDIQ------SNVKLLTAERDKLSVLYNEAQEELSA--LRKESTQTTAPHNIVSLMEKEKELALSDlrrimA 583
Cdd:pfam15921 443 QgQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEKERAIEATN-----A 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 584 EKEALREKLEhieeVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQkfshvagdssHQK 663
Cdd:pfam15921 518 EITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ----------HGR 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 664 TeVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETV 743
Cdd:pfam15921 584 T-AGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEV 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 744 DEKTEKIANLQE-------NLANK----EKAVAQMKIMISECESSVNQLKETL--------------VNRDREINSLRRQ 798
Cdd:pfam15921 663 KTSRNELNSLSEdyevlkrNFRNKseemETTTNKLKMQLKSAQSELEQTRNTLksmegsdghamkvaMGMQKQITAKRGQ 742
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083279 799 LDAAHKELD-------EVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRV 855
Cdd:pfam15921 743 IDALQSKIQfleeamtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
291-1038 |
1.29e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 291 IRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQL 370
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 371 ELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQRLSKKV------ESFAVTERQLTLEVERMRLEHGIKRRDRSPSRLD 444
Cdd:TIGR02169 245 QLASLEEELEKLTEEI---SELEKRLEEIEQLLEELNKKIkdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 445 TFLKGIEEERDYYKKELERL-----QHIIQRRSCSTSYSAREKssifrtpEKGDYNSEIHQITRERDELQRMLERFEKYM 519
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELereieEERKRRDKLTEEYAELKE-------ELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 520 EDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEstqttaphnIVSLMEKEKELAlsdlrrimAEKEALREKLEHIEEvs 599
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAA---------IAGIEAKINELE--------EEKEDKALEIKKQEW-- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 600 lfgksELEKTIEHLTcvnhQLESEKYELKSKVLIMKETIESLENKL---KVQAQKFSHVAGDSSHQKTEVNSLR--IVN- 673
Cdd:TIGR02169 456 -----KLEQLAADLS----KYEQELYDLKEEYDRVEKELSKLQRELaeaEAQARASEERVRGGRAVEEVLKASIqgVHGt 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 674 -EQLQRSVDDYQHRLSIKRG---------ELESAQAQIKIL-EEKIDELNL----KMTSQDEEAHVMKKTiGVIDKEKDF 738
Cdd:TIGR02169 527 vAQLGSVGERYATAIEVAAGnrlnnvvveDDAVAKEAIELLkRRKAGRATFlplnKMRDERRDLSILSED-GVIGFAVDL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 739 LqeTVDEKTEKI-----------------------------------------------ANLQENLANKEKAVAQMKIMI 771
Cdd:TIGR02169 606 V--EFDPKYEPAfkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsrapRGGILFSRSEPAELQRLRERL 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 772 SECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEm 851
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE- 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 852 ksrvhkYITEVSRWESLMAAKEKENQDLLDRfqMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKE 931
Cdd:TIGR02169 763 ------LEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 932 IQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELEN 1011
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
810 820
....*....|....*....|....*..
gi 50083279 1012 VKSESDLLKKQLSNERHTVKNLESLLA 1038
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
545-1036 |
2.85e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 545 EELSALRKESTQTTAphnIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEvslfgkseLEKTIEHLTCVNHQLESEK 624
Cdd:PRK02224 206 ERLNGLESELAELDE---EIERYEEQREQARETRDEADEVLEEHEERREELET--------LEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 625 YELKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKIL 704
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEER-------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 705 EEKIDELnlkmtsqDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKET 784
Cdd:PRK02224 348 REDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 785 LVNRDREINSLRRQLDAAHKELDEVGRSRE-------------------IAFKENRR--LQDDLATMARENQEISLELEA 843
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetIEEDRERVeeLEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 844 AVQEKeEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAED-------WEVKAHQAEGESSSVRLELLSIDT 916
Cdd:PRK02224 501 AEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaeaeeKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 917 ERRHLRERVELLEKeIQEHINAHHAYESQISSMAKAMSRLEEelrhQEDEKATVLNDLSS-LRELCIKLDsGKDIMTQQL 995
Cdd:PRK02224 580 KLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAE----LNDERRERLAEKRErKRELEAEFD-EARIEEARE 653
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 50083279 996 NSKNLE--FERVVVELENVKSESDLLKKQLSNERHTVKNLESL 1036
Cdd:PRK02224 654 DKERAEeyLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-823 |
4.00e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 4.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 203 DNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNI------- 275
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ-QIKDLNDKLKKNKDKINKLNSdlskins 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 276 -------QVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLErhkeevletadKELGEAK 348
Cdd:TIGR04523 111 eikndkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE-----------NELNLLE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 349 KEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQL----EQEKQRLSKKVESFAVTERQL-TLE 423
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLkdniEKKQQEINEKTTEISNTQTQLnQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 424 VERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQhiiqrrscstsysaREKSSIFRTpekgDYNSEIHQITR 503
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN--------------NQKEQDWNK----ELKSELKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 504 ERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELsalrkestqtTAPHNIVSLMEKEKELALSDLRRIMA 583
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL----------EEKQNEIEKLKKENQSYKQEIKNLES 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 584 EKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQK 663
Cdd:TIGR04523 392 QINDLESKIQNQEKLN----QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 664 TEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETV 743
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDEL 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 744 DEKTE--KIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENR 821
Cdd:TIGR04523 548 NKDDFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
..
gi 50083279 822 RL 823
Cdd:TIGR04523 628 KL 629
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
531-1116 |
6.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 531 AERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSL----MEKEKELALSDLRRIMAEKEALREKLEHIEEvslfGKSEL 606
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLevseLEEEIEELQKELYALANEISRLEQQKQILRE----RLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 607 EKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHR 686
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 687 LSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQ 766
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 767 MKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA---RENQEISLELEA 843
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLSeliSVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 844 AVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEGESSSVRLE------- 910
Cdd:TIGR02168 542 ALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklr 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 911 ---------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQISSMAKAMSRLEEELRH 962
Cdd:TIGR02168 616 kalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 963 QEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRD 1042
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083279 1043 KEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRR 1116
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
280-786 |
7.26e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 7.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 280 LQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQL--ERHKEEvletadKELGEAKKEIKRKLSE 357
Cdd:pfam15921 333 LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLlaDLHKRE------KELSLEKEQNKRLWDR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 358 MQDLEETMAKLQLELNLCQKEKERLsdELLVKSDLETVVHQLEQEKQRLSKKVESFAVTErQLTLEVERMRlehgikrrd 437
Cdd:pfam15921 407 DTGNSITIDHLRRELDDRNMEVQRL--EALLKAMKSECQGQMERQMAAIQGKNESLEKVS-SLTAQLESTK--------- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 438 rspsrldTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIfrtpekgdyNSEIHQITRERD----ELQRmLE 513
Cdd:pfam15921 475 -------EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT---------NAEITKLRSRVDlklqELQH-LK 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 514 RFEKYMEDIQSN---VKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNI-VSLMEKE---KELALSDLRRIMAEKE 586
Cdd:pfam15921 538 NEGDHLRNVQTEceaLKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVeKAQLEKEindRRLELQEFKILKDKKD 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 587 ALREKLE------HIEEVSLFG------------KSELEKTIEHLTCVNHQLE--SEKYE-LKSKVLIMKETIESLENKL 645
Cdd:pfam15921 618 AKIRELEarvsdlELEKVKLVNagserlravkdiKQERDQLLNEVKTSRNELNslSEDYEvLKRNFRNKSEEMETTTNKL 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 646 KVQAQKfshVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVM 725
Cdd:pfam15921 698 KMQLKS---AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKL 774
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50083279 726 KKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLV 786
Cdd:pfam15921 775 SQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV 835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-979 |
9.46e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 9.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 287 LEKRIRELMETKETVTSEvvnLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKEIKR-------KLSEMQ 359
Cdd:TIGR02169 242 IERQLASLEEELEKLTEE---ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASlersiaeKERELE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 360 DLEETMAKLQLELNLCQKEKERLSDELLVK-----------SDLETVVHQLEQEKQRLSK------------KVESFAVT 416
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEErkrrdklteeyAELKEELEDLRAELEEVDKefaetrdelkdyREKLEKLK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 417 ERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHII----QRRSCSTSYSAREKSSIFRTPEK- 491
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIkkqeWKLEQLAADLSKYEQELYDLKEEy 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 492 GDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERD----------KLSVLYNEAQE---------------- 545
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgSVGERYATAIEvaagnrlnnvvvedda 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 546 ------ELSALRKESTQTTAPHNIVSLMEKEKELALSD-----------------------LRR--IMAEKEALREKLEH 594
Cdd:TIGR02169 559 vakeaiELLKRRKAGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvFGDtlVVEDIEAARRLMGK 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 595 IEEVSLFGKSeLEKT--IEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFshvagdsSHQKTEVNSLRIV 672
Cdd:TIGR02169 639 YRMVTLEGEL-FEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL-------RRIENRLDELSQE 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 673 NEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEeahvmkktigvidkEKDFLQETVDEKTEKIAN 752
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS--------------ELKELEARIEELEEDLHK 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 753 LQENLANKEKAVAQMKIMISECESSvnQLKEtlvnrdrEINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMAR 832
Cdd:TIGR02169 777 LEEALNDLEARLSHSRIPEIQAELS--KLEE-------EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 833 ENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEgESSSVRLELL 912
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR-KRLSELKAKL 926
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50083279 913 SIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRE 979
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKE 993
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
495-980 |
1.09e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.26 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 495 NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELA 574
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 575 LSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNH---QLESEKYELKSKVLIMK---------------- 635
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKkikELEKQLNQLKSEISDLNnqkeqdwnkelkselk 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 636 ---ETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN 712
Cdd:TIGR04523 318 nqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 713 LKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREI 792
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 793 NSLRRQLDAAHKELDEvgrsreiafKENrrlqdDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAK 872
Cdd:TIGR04523 478 NKIKQNLEQKQKELKS---------KEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 873 EKENQDLLDRFqmlhNRAEDWEVKAHQAEgESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKA 952
Cdd:TIGR04523 544 EDELNKDDFEL----KKENLEKEIDEKNK-EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
490 500
....*....|....*....|....*...
gi 50083279 953 MSRLEEELRHQEDEKATVLNDLSSLREL 980
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
320-894 |
1.27e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 320 TEIDQLAQQLErHKEEVLETADKELGEAKKEIKR---KLSEMQDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVV 396
Cdd:PRK02224 213 SELAELDEEIE-RYEEQREQARETRDEADEVLEEheeRREELETLEAEIEDLRETIAETEREREELAEEV---RDLRERL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 397 HQLEQEKqrlskkvesfavTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEER---DYYKKELERLQHIIQRRSc 473
Cdd:PRK02224 289 EELEEER------------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLE- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 474 STSYSAREKSsifrtpekGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKE 553
Cdd:PRK02224 356 ERAEELREEA--------AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 554 stqttaphnivslmEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEhltcvnhQLESEKYELKSKVLI 633
Cdd:PRK02224 428 --------------EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIE-------EDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 634 MKETIESLENKLKvqaqkfshVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNL 713
Cdd:PRK02224 487 LEEEVEEVEERLE--------RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 714 KMTSQDEEAHVMKKTIGVIDKEkdflQETVDEKTEKIANLQENLAnkekavaqmkiMISECESSVNQLKETLVNRDrEIN 793
Cdd:PRK02224 559 AAAEAEEEAEEAREEVAELNSK----LAELKERIESLERIRTLLA-----------AIADAEDEIERLREKREALA-ELN 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 794 SLRRQLDAAHKEldevgRSREIA--FKENR--RLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLm 869
Cdd:PRK02224 623 DERRERLAEKRE-----RKRELEaeFDEARieEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL- 696
|
570 580
....*....|....*....|....*
gi 50083279 870 AAKEKENQDLLDRFQMLHNRAEDWE 894
Cdd:PRK02224 697 RERREALENRVEALEALYDEAEELE 721
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-934 |
7.49e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 7.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 317 QELTEIDQLAQQLE-RHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLvksDLETV 395
Cdd:COG1196 220 EELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY---ELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 396 VHQLEQEKQRLSKKVESFAVTERQLTLEVERMRlehgiKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRScst 475
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELE-----EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL--- 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 476 sysarekssifrtpekgDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEST 555
Cdd:COG1196 369 -----------------EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 556 QTtaphnivslmEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTcvnhQLESEKYELKSKVLIMK 635
Cdd:COG1196 432 EL----------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA----ELLEELAEAAARLLLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 636 ETIESLEnkLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN--- 712
Cdd:COG1196 498 EAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGrat 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 713 --LKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKimisecesSVNQLKETLVNRDR 790
Cdd:COG1196 576 flPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE--------AALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 791 EINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRvhkyitevsrwesLMA 870
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEE 714
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083279 871 AKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQE 934
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
512-1116 |
7.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 7.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 512 LERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLRRIMAEKEALREK 591
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE----------LEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 592 LEHIEEvslfGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRI 671
Cdd:TIGR02168 304 KQILRE----RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 672 VNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIA 751
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 752 NLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA 831
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 832 ---RENQEISLELEAAVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEG 902
Cdd:TIGR02168 527 eliSVDEGYEAAIEAALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 903 ESSSVRLE----------------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQIS 947
Cdd:TIGR02168 601 LGVAKDLVkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 948 SMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNER 1027
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1028 HTVKNLESLLATNRDKEfhshltsHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYER 1107
Cdd:TIGR02168 761 AEIEELEERLEEAEEEL-------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
....*....
gi 50083279 1108 ERAIQEMRR 1116
Cdd:TIGR02168 834 AATERRLED 842
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-1130 |
1.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 326 AQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQR 405
Cdd:TIGR02168 209 AEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL---EELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 406 LSKKVesFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQrrscstsysarekssi 485
Cdd:TIGR02168 286 LQKEL--YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE---------------- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 486 frtpekgdynseihQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEstqttaphniVS 565
Cdd:TIGR02168 348 --------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----------IE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 566 LMEKEKELALSDLRRIMAEKEALREKLEHIEevslfgKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKL 645
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAE------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 646 KVQAQKFSHVAGdsshQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILE--EKIDELNLKMTSQD---E 720
Cdd:TIGR02168 478 DAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyEAAIEAALGGRLQAvvvE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 721 EAHVMKKTIGVIDKEKD----FLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLK---------ETLVN 787
Cdd:TIGR02168 554 NLNAAKKAIAFLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvDDLDN 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 788 RDREINSLRRQLDAAHKELDEVGRSREIAFKENRRlqdDLATMARENqeislELEAAVQEKEEMKSRVHkyitevsrwes 867
Cdd:TIGR02168 634 ALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKT---NSSILERRR-----EIEELEEKIEELEEKIA----------- 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 868 lmaAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEhinahhaYESQIS 947
Cdd:TIGR02168 695 ---ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-------LEAEIE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 948 SMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLsner 1027
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL---- 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1028 htvknlesllatnrdkefhshltshekdTEIQLLKEKLTLSESKLTSQsrentmlrakVAQLQTDYDALKRQISTERYER 1107
Cdd:TIGR02168 841 ----------------------------EDLEEQIEELSEDIESLAAE----------IEELEELIEELESELEALLNER 882
|
810 820
....*....|....*....|...
gi 50083279 1108 ERAIQEMRRHGLATPPLSSTLRS 1130
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRE 905
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
196-545 |
1.55e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 196 ADLLQVADnRIQELQQEVHQLQEKLAMMESGV-------RDYSKQIELREREIERLsvaldggrspdvlsLESRNKTNEK 268
Cdd:TIGR02169 674 AELQRLRE-RLEGLKRELSSLQSELRRIENRLdelsqelSDASRKIGEIEKEIEQL--------------EQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 269 LiahlniqvdflqqanKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERH-KEEVLETADKELGEA 347
Cdd:TIGR02169 739 L---------------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 348 KKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLvksDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERM 427
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI---DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 428 RLEHGIKRRDRspSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSE----IHQITR 503
Cdd:TIGR02169 881 ESRLGDLKKER--DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEeelsLEDVQA 958
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 50083279 504 ERDELQRMLERFE----KYMEDIQSNVKLLTAERDKLSVLYNEAQE 545
Cdd:TIGR02169 959 ELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-968 |
2.23e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 203 DNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELRERE---IERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVDF 279
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErekAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 280 LQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQEL-----TEIDQLAQQLER------HKEEVLETADKELGEAK 348
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvkEKIGELEAEIASlersiaEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 349 KEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDEL-LVKSDLETVVHQLEQEKQRLSKKVESF-AVTERQLTLEVER 426
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELeDLRAELEEVDKEFAETRDELKDYREKLeKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 427 MRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHII----QRRSCSTSYSAREKSSIFRTPEK-GDYNSEIHQI 501
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIkkqeWKLEQLAADLSKYEQELYDLKEEyDRVEKELSKL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 502 TRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNE--AQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLR 579
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQlgSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 580 RIMAEKEAL----REKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLImkETIES------------LEN 643
Cdd:TIGR02169 569 RRKAGRATFlplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVV--EDIEAarrlmgkyrmvtLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 644 KLkvqAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRsvddYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAH 723
Cdd:TIGR02169 647 EL---FEKSGAMTGGSRAPRGGILFSRSEPAELQR----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 724 VMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKavaqmkiMISECESSVNQLKETLVNRDREINSLRRQLdaAH 803
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------ELKELEARIEELEEDLHKLEEALNDLEARL--SH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 804 KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKyitevsrWESLMAAKEKENQDLLDRF 883
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID-------LKEQIKSIEKEIENLNGKK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 884 QMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHinahhayESQISSMAKAMSRLEEELRHQ 963
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK-------RKRLSELKAKLEALEEELSEI 936
|
....*
gi 50083279 964 EDEKA 968
Cdd:TIGR02169 937 EDPKG 941
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
296-864 |
2.62e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 296 ETKETVTSEVVNL---SNKNEKLCQELTEIDQLAQQLER------HKEEVLETADKELGEAKKEIKRKLSEMQDLEETMA 366
Cdd:PRK03918 145 ESREKVVRQILGLddyENAYKNLGEVIKEIKRRIERLEKfikrteNIEELIKEKEKELEEVLREINEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 367 KLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRlehGIKRRDRSPSRLDTF 446
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK---ELKEKAEEYIKLSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 447 LKGIEEERDYYKKELERlqhiiqrrscstsYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNV 526
Cdd:PRK03918 302 YEEYLDELREIEKRLSR-------------LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 527 KLLTA-----------ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHI 595
Cdd:PRK03918 369 AKKEElerlkkrltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 596 EEVSLFGK-----SELEKTIEHLTCVNHQLESEKYEL------KSKVLIMKET---IESLENKLK-VQAQKFSHVAGDSS 660
Cdd:PRK03918 449 HRKELLEEytaelKRIEKELKEIEEKERKLRKELRELekvlkkESELIKLKELaeqLKELEEKLKkYNLEELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 661 HQKTEVNSL----RIVNEQLQRsVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEE-------AHVMKKTI 729
Cdd:PRK03918 529 KLKEKLIKLkgeiKSLKKELEK-LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEErlkelepFYNEYLEL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 730 GVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQlkETLVNRDREINSLRRQLDAAHKELDEV 809
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEEL 685
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 50083279 810 GRSREIAFKENRRLQDDLATMARENQEISLeLEAAVQEKEEMKSRVHKYITEVSR 864
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKALLKE 739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-642 |
2.77e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALD-------------GGRSPDVLSLESRNKT 265
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEeleeelaeleeelEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 266 NEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELG 345
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 346 EAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVE 425
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 426 RMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSARE----------------KSSIFRTP 489
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEylkaakagratflpldKIRARAAL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 490 EKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEK 569
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50083279 570 EKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLE 642
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-419 |
6.18e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 6.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 202 ADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDggrspdvlSLESRNKTNEKLIAHLNIQVDflq 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIE--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 282 QANKDLEKRIRELMETKETVTSEVVNLSNKNekLCQELTEIDQLAQQLERHKEEV--LETADKELGEAKKEIKRKLSEMQ 359
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLeeLKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 360 DLEETMAKLQLELNLCQKEKERLSDELlvKSDLETVVHQLEQEKQRLSKKVESFAVTERQ 419
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQL--SAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
792-1042 |
7.43e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 7.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 792 INSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISlELEAAVQEKEEMKsrvhkyitevsrweslmAA 871
Cdd:PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETI-----------------AE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 872 KEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAK 951
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 952 AMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVK 1031
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
250
....*....|.
gi 50083279 1032 NLESLLATNRD 1042
Cdd:PRK02224 430 ELEATLRTARE 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
677-882 |
1.04e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 677 QRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEN 756
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 757 LANKEKAVAQM-----------KIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQD 825
Cdd:COG4942 99 LEAQKEELAELlralyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 50083279 826 DLATMARENQeislELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 882
Cdd:COG4942 179 LLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-412 |
1.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 196 ADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNI 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 276 QvdfLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEvLETADKELGEAKKEIKRKL 355
Cdd:COG4942 98 E---LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE-LRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 50083279 356 SEMQDLEETMAKLQLELNLCQKEKERLSDELLV-KSDLETVVHQLEQEKQRLSKKVES 412
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKeLAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-372 |
1.41e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 195 IADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSP---------DVLSLESRNKT 265
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEleaqkeelaELLRALYRLGR 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 266 NEKLIAHLNIQ--------VDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEE-- 335
Cdd:COG4942 119 QPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAErq 198
|
170 180 190
....*....|....*....|....*....|....*...
gi 50083279 336 -VLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLEL 372
Cdd:COG4942 199 kLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
348-1092 |
1.47e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 348 KKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERM 427
Cdd:TIGR00618 159 KAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 428 RLEHGIKRRDRSpsrldtflkgIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDE 507
Cdd:TIGR00618 239 QQSHAYLTQKRE----------AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 508 LQRMLERfekymedIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTA------PHNIVSLMEKEKELALSDLRRI 581
Cdd:TIGR00618 309 AQRIHTE-------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQeihirdAHEVATSIREISCQQHTLTQHI 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 582 MaekeALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKyELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSH 661
Cdd:TIGR00618 382 H----TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR-DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKL 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 662 QKTEVNSLRIV---NEQLQRSVDDYQHRLSIKRGE----LESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDK 734
Cdd:TIGR00618 457 EKIHLQESAQSlkeREQQLQTKEQIHLQETRKKAVvlarLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQT 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 735 EKDFLQ--ETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQlketlvnrdrEINSLRRQLDAAHKELDEVGRS 812
Cdd:TIGR00618 537 YAQLETseEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE----------DIPNLQNITVRLQDLTEKLSEA 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 813 REIAFKENRRLQDDLaTMARENQEISLELEAAVQEKEEMKSRVHKYITEvsrwesLMAAKEKENQDLLDRFQMLHNRAED 892
Cdd:TIGR00618 607 EDMLACEQHALLRKL-QPEQDLQDVRLHLQQCSQELALKLTALHALQLT------LTQERVREHALSIRVLPKELLASRQ 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 893 WEVKAHQAEGESSSVRLELLS-IDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDE--KAT 969
Cdd:TIGR00618 680 LALQKMQSEKEQLTYWKEMLAqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTvlKAR 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 970 VLNDLSSLRELCIKLDSGKDI--MTQQLNSKNLEFERVVVELENVKSE------SDLLKKQLSNERhTVKNLESLLATNR 1041
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQTGAELshLAAEIQFFNRLREEDTHLLKTLEAEigqeipSDEDILNLQCET-LVQEEEQFLSRLE 838
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 50083279 1042 DKEFHSHLTSHE--KDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTD 1092
Cdd:TIGR00618 839 EKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGD 891
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
740-959 |
2.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 740 QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKE 819
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 820 NRRLQDDLATMARENQEISLELEAAV---QEKEEMKSRVHKYITEVSRW-ESLMAAKEKENQDLLDRFQMLHNRAEDWEV 895
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083279 896 KAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEE 959
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
779-1115 |
4.75e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 779 NQLKETLVNRDR---EINSLRRQLDAAHKELDEVGRSREIAfKENRRLQDDLATmarenqeisLELEAAVQEKEEMKSRV 855
Cdd:TIGR02168 179 RKLERTRENLDRledILNELERQLKSLERQAEKAERYKELK-AELRELELALLV---------LRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 856 HKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEH 935
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 936 inahhayESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELcikldsgkdimTQQLNSKNLEFErvvVELENVKSE 1015
Cdd:TIGR02168 329 -------ESKLDELAEELAELEEKLEELKEELESLEAELEELEAE-----------LEELESRLEELE---EQLETLRSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1016 SDLLKKQLSNERHTVKNLESLLatnrdkefhSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDA 1095
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARL---------ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340
....*....|....*....|
gi 50083279 1096 LKRQISTERYERERAIQEMR 1115
Cdd:TIGR02168 459 LEEALEELREELEEAEQALD 478
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
535-1117 |
6.45e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 6.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 535 KLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKealREKLEHIEEVSLFGKSELEKTIEHlt 614
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEES---RDKANQLEEKTKLQDENLKELIEK-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 615 cvNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLR----IVNEQLQRSVDDYQHRLSIK 690
Cdd:pfam05483 291 --KDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKaahsFVVTEFEATTCSLEELLRTE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 691 RGELESAQAQIKILEEKIDelnlKMTSQDEEAHVMKKTigvidkekdflQETVDEKTEKIANLQENLANKEKavaQMKIM 770
Cdd:pfam05483 369 QQRLEKNEDQLKIITMELQ----KKSSELEEMTKFKNN-----------KEVELEELKKILAEDEKLLDEKK---QFEKI 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 771 ISECESSVNQLKETLVNRDREINSLRRQLDAAH-------KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEA 843
Cdd:pfam05483 431 AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseehylKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASD 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 844 AVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQM----LHNRAEDWEVKAHQAEGESSSVRLELLSIDTERR 919
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESvreeFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMK 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 920 HLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRElciKLDSGKDIMTQQLNSKN 999
Cdd:pfam05483 591 ILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ---KFEEIIDNYQKEIEDKK 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1000 LEFERVVVELENVKSESD----LLKKQLSNERHTVKNLESLLATNRdkefhshltsHEKDTEIQLLKEKLTLSESKLTSQ 1075
Cdd:pfam05483 668 ISEEKLLEEVEKAKAIADeavkLQKEIDKRCQHKIAEMVALMEKHK----------HQYDKIIEERDSELGLYKNKEQEQ 737
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 50083279 1076 SRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRRH 1117
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKEN 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
228-453 |
6.70e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 228 RDYSKQIELREREIERLSVALDGGRspDVLSLESRNKTNEKLIAHLniQVDFLQQANKDLEKRIRELMETKETVTSEVVN 307
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAE--RYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 308 LSNKNEKLcqeLTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDEL- 386
Cdd:COG4913 314 LEARLDAL---REELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAa 390
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50083279 387 LVKSDLETVVHQLEQEKQRLskKVESFAVTERQLTLEVERMRLEHgikRRDRSPSRLDTFLKGIEEE 453
Cdd:COG4913 391 ALLEALEEELEALEEALAEA--EAALRDLRRELRELEAEIASLER---RKSNIPARLLALRDALAEA 452
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
569-794 |
6.75e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 569 KEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQ 648
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 649 AQKFSHVAGDSSHQKTEVNSLRIVNeqlQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKT 728
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 50083279 729 IGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 794
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
187-1025 |
7.51e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 187 VPQPDDPYIADLLQVADNRIQELQQ---EVHQLQEKLAM-MESGVRDYskQIELREREIERLSVAlDGGRSPDVLSLESR 262
Cdd:pfam15921 68 IAYPGKEHIERVLEEYSHQVKDLQRrlnESNELHEKQKFyLRQSVIDL--QTKLQEMQMERDAMA-DIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 263 NK---TNEKLIAHLNIQVDFLQQANKDLEKrIRELMETKETVTSEVVN-LSNKNEKLCQELTEIDQLAQQLERHKEEVLE 338
Cdd:pfam15921 145 NQlqnTVHELEAAKCLKEDMLEDSNTQIEQ-LRKMMLSHEGVLQEIRSiLVDFEEASGKKIYEHDSMSTMHFRSLGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 339 TADKELGEAKKEIKRKLSEMQD-LEETMAKLQLELNLCQKEKERLSDELLVKSDLEtvVHQLEQEKQRLSKKVESFavtE 417
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDqLEALKSESQNKIELLLQQHQDRIEQLISEHEVE--ITGLTEKASSARSQANSI---Q 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 418 RQLTLEVERMRLEHGIKRRDRS--PSRLDTFLKGIEEERDYYKKELERLqhiiqrrscstsysarEKSSIFRTPEKGDYN 495
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSdlESTVSQLRSELREAKRMYEDKIEEL----------------EKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 496 SEIHQITRERDELQrmlERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEE---LSALRKE-STQTTAPHNIVSLMEKEK 571
Cdd:pfam15921 363 TERDQFSQESGNLD---DQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitIDHLRRElDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 572 ELALSDLRRIMAEKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVqaqk 651
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSSLT----AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA---- 511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 652 fshvagdSSHQKTEVNSLRivnEQLQRSVDDYQHrlsikrgeLESAQAQIKILEEKIDELNLKMTSQDeeahvmkKTIGV 731
Cdd:pfam15921 512 -------IEATNAEITKLR---SRVDLKLQELQH--------LKNEGDHLRNVQTECEALKLQMAEKD-------KVIEI 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 732 IDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISEcessVNQLKETLVNRDREINSLRRQLDAAHKELDEVGR 811
Cdd:pfam15921 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE----FKILKDKKDAKIRELEARVSDLELEKVKLVNAGS 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 812 SREIAFKENRRLQDDLATMARENQEislELEAAVQEKEEMKSRVHKyitevsrweslmaaKEKENQDLLDRFQMlhnrae 891
Cdd:pfam15921 643 ERLRAVKDIKQERDQLLNEVKTSRN---ELNSLSEDYEVLKRNFRN--------------KSEEMETTTNKLKM------ 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 892 dwEVKAHQAEGESSsvRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATvl 971
Cdd:pfam15921 700 --QLKSAQSELEQT--RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK-- 773
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 50083279 972 ndlsslrelcikldsgkdiMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSN 1025
Cdd:pfam15921 774 -------------------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
207-430 |
7.78e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 207 QELQQEVHQLQEKLAMMEsgVRDYSKQIELREREIERLsvaldggrspdvlslESRNKTNEKLIAHLNIQVDFLQQANKD 286
Cdd:COG1196 216 RELKEELKELEAELLLLK--LRELEAELEELEAELEEL---------------EAELEELEAELAELEAELEELRLELEE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 287 LEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLE---RHKEEVLETADKELGEAKKEIKRKLSEMQDLEE 363
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEeelAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50083279 364 TMAKLQLELnlcQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLE 430
Cdd:COG1196 359 ELAEAEEAL---LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
199-367 |
8.63e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 8.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNK---------TNEKL 269
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-EIEEVEARIKkyeeqlgnvRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 270 IAHLNIQVDFLQQANKDLEKRIRELMETKETVTsevvnlsnkneklcQELTEIDQLAQQLERHKEEVLETADKELGEAKK 349
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELE--------------EELAELEAELAELEAELEEKKAELDEELAELEA 156
|
170
....*....|....*...
gi 50083279 350 EIKRKLSEMQDLEETMAK 367
Cdd:COG1579 157 ELEELEAEREELAAKIPP 174
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-471 |
8.72e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 265 TNEKLIAHLNIQVDFLQQANKDLEKRIRELmETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEV--LETADK 342
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEAL-EAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELerLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 343 ELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELlvksdletvvhqleQEKQRLSKKVESFAVTERQLTL 422
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL--------------DELQDRLEAAEDLARLELRALL 751
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 50083279 423 EvERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRR 471
Cdd:COG4913 752 E-ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
626-844 |
9.90e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 626 ELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIvnEQLQRSVDDYQHRLSIKRGELESAQAQIKILE 705
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 706 EKIDELnlkmTSQDEEAHVMKKTIGVIDKEKdfLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETL 785
Cdd:COG4913 316 ARLDAL----REELDELEAQIRGNGGDRLEQ--LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 50083279 786 vnrDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 844
Cdd:COG4913 390 ---AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-642 |
1.69e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 205 RIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGR------SPDVLSLESRNKTNEKLIAHL----- 273
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeagldDADAEAVEARREELEDRDEELrdrle 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 274 ---------NIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLER----------HKE 334
Cdd:PRK02224 332 ecrvaaqahNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvdlgNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 335 EVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQ--LELNLC---------QKEKERLSDELLVKSDLETVVHQLEQEK 403
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEalLEAGKCpecgqpvegSPHVETIEEDRERVEELEAELEDLEEEV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 404 QRLSKKVESfAVTERQLTLEVERMRlehgiKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHI-----IQRRSCSTSYS 478
Cdd:PRK02224 492 EEVEERLER-AEDLVEAEDRIERLE-----ERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeEKREAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 479 AREKSSIfrtpEKGDYNSEIHQITRERDELQRMLERFEKyMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTT 558
Cdd:PRK02224 566 EAEEARE----EVAELNSKLAELKERIESLERIRTLLAA-IADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 559 APHNivslmEKEKELALSDLRRIMAEKEALREKLEHIEEvslfGKSELEKTIEHLTCVNHQLESEKYELKSkvliMKETI 638
Cdd:PRK02224 641 AEFD-----EARIEEAREDKERAEEYLEQVEEKLDELRE----ERDDLQAEIGAVENELEELEELRERREA----LENRV 707
|
....
gi 50083279 639 ESLE 642
Cdd:PRK02224 708 EALE 711
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
696-882 |
2.04e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 696 SAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISE-- 773
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 774 --------CESSVNQLKE-----TLVNRdreINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLE 840
Cdd:COG3883 93 ralyrsggSVSYLDVLLGsesfsDFLDR---LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 50083279 841 LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 882
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
88-403 |
2.66e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 88 ELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERIQQLQEKNLHAVVQTPGGKKRSIafR 167
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL--E 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 168 RQRMQIDEPVPPSEVSSYPVPQpddpyiadLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVA 247
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTL--------EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 248 ldggrspdVLSLESRnktneklIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQ 327
Cdd:TIGR02169 877 --------LRDLESR-------LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 328 QLERHKEEVLetadkELGEAKKEIKRKLSEMQDLE-------ETMAKLQLELNLCQKEKERLSDEllvKSDLETVVHQLE 400
Cdd:TIGR02169 942 EDEEIPEEEL-----SLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEE---RKAILERIEEYE 1013
|
...
gi 50083279 401 QEK 403
Cdd:TIGR02169 1014 KKK 1016
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
534-1113 |
2.96e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 534 DKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHL 613
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 614 TCVNHQLESEKYELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLqrsvDDYQHRLSIKRGE 693
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIE-ELKKEIEELEEKVKELKELKEKAEEYIKLSEFY----EEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 694 LESAQAQIKILEEKIDELNlkmtSQDEEAHVMKKTIGVIDKEKDFLQETVdEKTEKIANLQENLANKEKAVA-----QMK 768
Cdd:PRK03918 316 LSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTgltpeKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 769 IMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDD-----LATMARENQEISLELEA 843
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 844 AVQEKEEMKSRVHKYITEVSRWESLMAAKEkenqdLLDRFQMLHNRAEDWEVKAHQAEGEsssvrlELLSIDTERRHLRE 923
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKE-----LAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 924 RVELLEKEIQEhinahhayesqISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKdimTQQLNsknlEFE 1003
Cdd:PRK03918 540 EIKSLKKELEK-----------LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER---LKELE----PFY 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1004 RVVVELENVKSESDLLKKQLSNERHTVKNLESLLAtNRDKEFHShLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLR 1083
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEE-LRKELEELEKKYSEEEYEELREEYLELSRELAGLR 679
|
570 580 590
....*....|....*....|....*....|...
gi 50083279 1084 AKVAQLQTDYDALKRQI---STERYERERAIQE 1113
Cdd:PRK03918 680 AELEELEKRREEIKKTLeklKEELEEREKAKKE 712
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
204-395 |
3.13e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 204 NRIQELQQEVHQLQEKlammESGVRDYSKQIELREREIERLSVALDggrspdvlSLESRNKTNEKLIAHLNiqvdfLQQA 283
Cdd:COG4717 71 KELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELE--------ELREELEKLEKLLQLLP-----LYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 284 NKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKEIKRKLSEMQDLEE 363
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190
....*....|....*....|....*....|..
gi 50083279 364 TMAKLQLELNLCQKEKERLSDELLVKSDLETV 395
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
240-986 |
3.15e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 240 EIERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVV-----NLSNKNEK 314
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRdelngELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 315 LCQELTEIDQLAQQLERHKEEVLETADKELGEAKKeikrKLSEMQDLEETMAKLQLELNLCQKEKERLsdELLVKSDLET 394
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLDADIETAAADQEQLPS----WQSELENLEERLKALTGKHQDVTAKYNRR--RSKIKEQNNR 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 395 VVHQLEqekQRLSKKVEsfavtERQLTLEVERMRLEhgiKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIqrrscs 474
Cdd:pfam12128 391 DIAGIK---DKLAKIRE-----ARDRQLAVAEDDLQ---ALESELREQLEAGKLEFNEEEYRLKSRLGELKLRL------ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 475 tsysarekSSIFRTPEkgdynsEIHQITRERDELQRMLERFE---KYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALR 551
Cdd:pfam12128 454 --------NQATATPE------LLLQLENFDERIERAREEQEaanAEVERLQSELRQARKRRDQASEALRQASRRLEERQ 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 552 KESTQ-----TTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKL-------EHIEEVSLFGKSELEKTIEHLTCVNHQ 619
Cdd:pfam12128 520 SALDElelqlFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdpevwdgSVGGELNLYGVKLDLKRIDVPEWAASE 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 620 lesekYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQlqrsVDDYQHRLSikrGELESAQA 699
Cdd:pfam12128 600 -----EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKN----ARLDLRRLF---DEKQSEKD 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 700 QI-KILEEKIDELNLKMTSQDEEAHVMKKtigvidKEKDFLQETVDEK----TEKIANLQENLANKEKAVAQMKIMISEC 774
Cdd:pfam12128 668 KKnKALAERKDSANERLNSLEAQLKQLDK------KHQAWLEEQKEQKrearTEKQAYWQVVEGALDAQLALLKAAIAAR 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 775 ESSV------------NQLK------ETLVNRDREINSLRRQLDAAHKELDEVGR----SREIAFKENRRLQDDLATMAR 832
Cdd:pfam12128 742 RSGAkaelkaletwykRDLAslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIER 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 833 ENQEISLELEAavqEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKahQAEGESSSVRLELL 912
Cdd:pfam12128 822 AISELQQQLAR---LIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSE--QAQGSIGERLAQLE 896
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50083279 913 SIDTERRHLRERVELLEKEIQEHINAHHAyesqiSSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDS 986
Cdd:pfam12128 897 DLKLKRDYLSESVKKYVEHFKNVIADHSG-----SGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDV 965
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
493-1115 |
3.48e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 493 DYNSEIHQITRERDELQRMLERFEKYME----DIQSNVKLLTAERDKLSVLY---NEAQEEL-SALRKESTQTTAPHNIV 564
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNELHEKQKFYLRqsviDLQTKLQEMQMERDAMADIRrreSQSQEDLrNQLQNTVHELEAAKCLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 565 SLMEKEKELALSDLRRIMAEKEALREKLEHIeeVSLFGKSELEKTIEHLTCVNHQLESekyelkskvliMKETIESLENK 644
Cdd:pfam15921 162 EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSI--LVDFEEASGKKIYEHDSMSTMHFRS-----------LGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 645 LKVQaqkFSHVAGdsshqktevnSLRIVNEQLQRSVDDYQHRLsikrgELESAQAQIKIlEEKIDELNLKMTSQDEEAHV 724
Cdd:pfam15921 229 LDTE---ISYLKG----------RIFPVEDQLEALKSESQNKI-----ELLLQQHQDRI-EQLISEHEVEITGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 725 MKKTIGVIDKEKDFLQETVDEKTekianlqenlankekavAQMKIMISECESSVNQLKETLVNRDR----EINSLRRQLD 800
Cdd:pfam15921 290 ARSQANSIQSQLEIIQEQARNQN-----------------SMYMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLV 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 801 AAHKELDEVGRSREIAFKENRRLQDDL----ATMARENQEISLELEaavQEKEEMKSRVHKYIT-------------EVS 863
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQLqkllADLHKREKELSLEKE---QNKRLWDRDTGNSITidhlrrelddrnmEVQ 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 864 RWESLMAAKEKENQDLLDR-FQMLHNRAEDWE-VKAHQAEGESSSVRL-----ELLSIDTERRHLRERVELLEKEIQEHI 936
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERqMAAIQGKNESLEkVSSLTAQLESTKEMLrkvveELTAKKMTLESSERTVSDLTASLQEKE 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 937 NAHHAYESQISSMAKAMSRLEEELRH---QEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVK 1013
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDLKLQELQHlknEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQ 589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1014 SESDLLKKQLSNERHTVKNLESLlatnRDKEFHSHLTSHEKDTEIQLLKEKLT------LSESKLTSQSRENTM-----L 1082
Cdd:pfam15921 590 VEKAQLEKEINDRRLELQEFKIL----KDKKDAKIRELEARVSDLELEKVKLVnagserLRAVKDIKQERDQLLnevktS 665
|
650 660 670
....*....|....*....|....*....|...
gi 50083279 1083 RAKVAQLQTDYDALKRQISTERYERERAIQEMR 1115
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
486-755 |
5.12e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 486 FRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLL-TAERDKLSVLYNEAQEELSALRKEstqttaphnIV 564
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkKVSVKSLEELIKDVEEELEKIEKE---------IK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 565 SLMEKEKELAlSDLRRIMAEKEALrEKLEHIE-EVSLFGKSELEKTIEHLtcVNHQLESEKYELKSKVLImkETIESLEN 643
Cdd:PRK05771 104 ELEEEISELE-NEIKELEQEIERL-EPWGNFDlDLSLLLGFKYVSVFVGT--VPEDKLEELKLESDVENV--EYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 644 K-------LKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRsvddYQHRLSIKRGELESAQAQIKILEEKIDELNL--- 713
Cdd:PRK05771 178 YvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIRE----IKEELEEIEKERESLLEELKELAKKYLEELLaly 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 50083279 714 -KMTSQDEEAHVMKKTIG----------VIDKEKDFLQETVDEKTEKIANLQE 755
Cdd:PRK05771 254 eYLEIELERAEALSKFLKtdktfaiegwVPEDRVKKLKELIDKATGGSAYVEF 306
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
199-371 |
5.26e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALD--------GGRSPDVLS--LESRNktnek 268
Cdd:COG3883 39 LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrSGGSVSYLDvlLGSES----- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 269 lIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEE---VLETADKELG 345
Cdd:COG3883 114 -FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEqeaLLAQLSAEEA 192
|
170 180
....*....|....*....|....*.
gi 50083279 346 EAKKEIKRKLSEMQDLEETMAKLQLE 371
Cdd:COG3883 193 AAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
260-443 |
5.43e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.47 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 260 ESRNKTNEKLIAHLNIQVDFLQQANKdlekrirELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLET 339
Cdd:smart00787 136 EWRMKLLEGLKEGLDENLEGLKEDYK-------LLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDR 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 340 ADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELlvksdletvvhqLEQEKQRLSKKVESFAvTERQ 419
Cdd:smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI------------AEAEKKLEQCRGFTFK-EIEK 275
|
170 180
....*....|....*....|....
gi 50083279 420 LTLEVERMRLEHGIKRRDRSPSRL 443
Cdd:smart00787 276 LKEQLKLLQSLTGWKITKLSGNTL 299
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
669-1118 |
5.55e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 669 LRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILE------------------EKIDELNLKMTSQDEEAHVMKKTIG 730
Cdd:pfam12128 292 LRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEdqhgafldadietaaadqEQLPSWQSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 731 VIDKEKDFLQETVDEK-TEKIANLQENLAN-KEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKEL-- 806
Cdd:pfam12128 372 DVTAKYNRRRSKIKEQnNRDIAGIKDKLAKiREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELkl 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 807 -------------------DEVGRSREI---AFKENRRLQDDLATM--ARENQEISL--------ELEAAVQEKEEM--- 851
Cdd:pfam12128 452 rlnqatatpelllqlenfdERIERAREEqeaANAEVERLQSELRQArkRRDQASEALrqasrrleERQSALDELELQlfp 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 852 --KSRVHKYITEVSRWESLMAakekenqDLLDRfQMLHNRAEDWEVKAHQAEGESS--SVRLELLSIDTERRH-----LR 922
Cdd:pfam12128 532 qaGTLLHFLRKEAPDWEQSIG-------KVISP-ELLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 923 ERVELLEKEIQEHINAHHAYESQissMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSknlEF 1002
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE---RK 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1003 ERVVVELENVKSESDLLKKQLSNERHTVKNlESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTML 1082
Cdd:pfam12128 678 DSANERLNSLEAQLKQLDKKHQAWLEEQKE-QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWY 756
|
490 500 510
....*....|....*....|....*....|....*.
gi 50083279 1083 RAKVAQLQTDYDALKRqISTERYERERAIQEMRRHG 1118
Cdd:pfam12128 757 KRDLASLGVDPDVIAK-LKREIRTLERKIERIAVRR 791
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
334-891 |
6.00e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 334 EEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESF 413
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 414 AVTERQLT-LEVERMRLEHgikrrdrspsrlDTFLKGIEEERDY--YKKELERLQHIIQR-RSCSTSYSAREKSSIFRTP 489
Cdd:PRK01156 269 LEKNNYYKeLEERHMKIIN------------DPVYKNRNYINDYfkYKNDIENKKQILSNiDAEINKYHAIIKKLSVLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 490 EKGDY---NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHN--IV 564
Cdd:PRK01156 337 DYNDYikkKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNeiNV 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 565 SLMEKEkelalSDLRRIMAEKEALREKLEHIEE----------VSLFGKSELEKTIEHLtcVNHQLEsEKYELKSKVLIM 634
Cdd:PRK01156 417 KLQDIS-----SKVSSLNQRIRALRENLDELSRnmemlngqsvCPVCGTTLGEEKSNHI--INHYNE-KKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 635 KETIESLENKLKVQAQKFSHVAG-DSSHQKTEVNSLRIVNEQLQRSVDDyQHRLSIKRGELESAQAQIKILeeKIDELNL 713
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLEDIKIK-INELKDKHDKYEEIKNRYKSL--KLEDLDS 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 714 KMTSQDEEAHVmkktIGVIDKEKdfLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREIN 793
Cdd:PRK01156 566 KRTSWLNALAV----ISLIDIET--NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 794 SLRRQLDAAHKELDEVgrSREIAFKENRrlQDDLATMARENQEISLELeaavqekEEMKSRVHKYITEVSRWESLMAAKE 873
Cdd:PRK01156 640 ENKILIEKLRGKIDNY--KKQIAEIDSI--IPDLKEITSRINDIEDNL-------KKSRKALDDAKANRARLESTIEILR 708
|
570
....*....|....*...
gi 50083279 874 KENQDLLDRFQMLHNRAE 891
Cdd:PRK01156 709 TRINELSDRINDINETLE 726
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
693-911 |
6.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 693 ELESAQAQIKILEEKIDELNLKMTSQdeeahvmKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMIS 772
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 773 ECESSVNQLKETLVNRDREINSLRRQLDAAH----KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEK 848
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 50083279 849 EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLEL 911
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
335-979 |
6.14e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 335 EVLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKS----DLETVVHQLEQEKQRLSKKV 410
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISselpELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 411 ESFAVTERQLTLEVERMRlehgikrrdrspsRLDTFLKGIEEERDYYKKELERLQHIIQRrscSTSYSAREKSSIFRTPE 490
Cdd:PRK03918 238 EEIEELEKELESLEGSKR-------------KLEEKIRELEERIEELKKEIEELEEKVKE---LKELKEKAEEYIKLSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 491 KGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKlltaERDKLSVLYNEAQEELSALrkestqttaphnivslmeKE 570
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE----RLEELKKKLKELEKRLEEL------------------EE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 571 KELALSDLRRIMAEKEALREKLEHIEEVSLFGK-SELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLEnklkvqa 649
Cdd:PRK03918 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK------- 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 650 qkfshvagdSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNlKMTSQDEEAHVMKKTI 729
Cdd:PRK03918 433 ---------KAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELA 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 730 GVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEV 809
Cdd:PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 810 GRSreiAFKENRRLQDDLATMAREnqeiSLELEAAVQEKEEMKSRVHKYITEVSrweslmaAKEKENQDLLDRFQMLHNR 889
Cdd:PRK03918 583 GFE---SVEELEERLKELEPFYNE----YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKE 648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 890 AEdwevkahqaegesssvrlELLSIDTERRHLRERVELLEKEiqehinahhayesqissmaKAMSRLEEELRHQEDEKAT 969
Cdd:PRK03918 649 LE------------------ELEKKYSEEEYEELREEYLELS-------------------RELAGLRAELEELEKRREE 691
|
650
....*....|
gi 50083279 970 VLNDLSSLRE 979
Cdd:PRK03918 692 IKKTLEKLKE 701
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-516 |
6.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 202 ADNRIQELQQEVHQLQEKLAmmesgvrDYSKQIELREREIERLsvaldggrspdvlslesrnktNEKLIAHLNI-QVDFL 280
Cdd:COG4913 608 NRAKLAALEAELAELEEELA-------EAEERLEALEAELDAL---------------------QERREALQRLaEYSWD 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 281 QQANKDLEKRIRELMETKETVTSevvnlSNKneklcqeltEIDQLAQQLERHKEEvLETADKELGEAKKEIKRKLSEMQD 360
Cdd:COG4913 660 EIDVASAEREIAELEAELERLDA-----SSD---------DLAALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQ 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 361 LEETMAKLQLELNLCQKEK--------ERLSDELLVKSDLETVVHQLEQEKQRLSKKVesfavteRQLTLEVERMRLEHg 432
Cdd:COG4913 725 AEEELDELQDRLEAAEDLArlelrallEERFAAALGDAVERELRENLEERIDALRARL-------NRAEEELERAMRAF- 796
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 433 iKRRDRSPSR-LDTFLKGIEEERDYYKK----ELERLQHIIQRrscstsysAREKSSI-FRTPEKGDYNSEIHQITRERD 506
Cdd:COG4913 797 -NREWPAETAdLDADLESLPEYLALLDRleedGLPEYEERFKE--------LLNENSIeFVADLLSKLRRAIREIKERID 867
|
330
....*....|
gi 50083279 507 ELQRMLERFE 516
Cdd:COG4913 868 PLNDSLKRIP 877
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
584-1113 |
1.14e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 584 EKEALR-EKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMK--ETIESLENKLKVQAQKFSHVAGDSS 660
Cdd:PTZ00121 1239 AEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 661 HQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIdKEKDFLQ 740
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 741 ETVDEKTEKIANLQENLANKEKA-----VAQMKIMISECESSVNQLKETlvNRDREINSLRRQLDAAHKELDEVGRSREI 815
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKAdeakkKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 816 AFK-ENRRLQDDLATMARENQEISLELEAAVQEK----------EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQ 884
Cdd:PTZ00121 1476 KKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadeakkaeEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 885 MLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQE 964
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 965 DEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATN-RDK 1043
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEaEEK 1715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 50083279 1044 EFHSHLTSHEKDTEIQLLKEKLTLSESKLTS-QSRENTMLRAKVAQLQTDYDALKRQIsteRYERERAIQE 1113
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEI---RKEKEAVIEE 1783
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
532-1041 |
1.21e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 532 ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLmekeKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIE 611
Cdd:pfam10174 203 QKEKENIHLREELHRRNQLQPDPAKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQME 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 612 HLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKR 691
Cdd:pfam10174 279 VYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 692 GELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEnlankekAVAQMKIMI 771
Cdd:pfam10174 359 SFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKE-------RVKSLQTDS 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 772 SECESSVNQLKETLVNRDREINSLRRQLDAAHKE-LDEVGRSReiafKENRRLQDDLATMARENQEISLELEAAVQEKEE 850
Cdd:pfam10174 432 SNTDTALTTLEEALSEKERIIERLKEQREREDRErLEELESLK----KENKDLKEKVSALQPELTEKESSLIDLKEHASS 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 851 MKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEgesssvRLELLSIDTERRhlRERVELLEK 930
Cdd:pfam10174 508 LASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIND------RIRLLEQEVARY--KEESGKAQA 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 931 EIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIK------LDSGKDIMTQQLNSKNLEFER 1004
Cdd:pfam10174 580 EVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKkgaqllEEARRREDNLADNSQQLQLEE 659
|
490 500 510
....*....|....*....|....*....|....*..
gi 50083279 1005 VVVELENVKSESDLLKKQLSNERHTVKNLESLLATNR 1041
Cdd:pfam10174 660 LMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR 696
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
662-847 |
1.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 662 QKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEE-----------AHVMKKTIG 730
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerreelgerARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 731 VIDKE---------KDFL-------------QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNR 788
Cdd:COG3883 101 SVSYLdvllgsesfSDFLdrlsalskiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 50083279 789 DREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQE 847
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
334-546 |
1.67e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 334 EEVLETADKELGEAKKEIKRKLSEMQDLEETMAKLqlelnlcQKEKERLsdELLVKSDLEtvvhqLEQEKQRLSKKVESF 413
Cdd:PRK05771 85 EELIKDVEEELEKIEKEIKELEEEISELENEIKEL-------EQEIERL--EPWGNFDLD-----LSLLLGFKYVSVFVG 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 414 AVTERQLtlevermrlehgiKRRDRSPSRLDTFLKGIEEERDYY-----KKELERLQHIIQRrscstsYSAREkssiFRT 488
Cdd:PRK05771 151 TVPEDKL-------------EELKLESDVENVEYISTDKGYVYVvvvvlKELSDEVEEELKK------LGFER----LEL 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 50083279 489 PEKG-------DYNSEIHQITRERDELQRMLERF-EKYMEDIQSNVKLLTAERDKLSVLYNEAQEE 546
Cdd:PRK05771 208 EEEGtpselirEIKEELEEIEKERESLLEELKELaKKYLEELLALYEYLEIELERAEALSKFLKTD 273
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
321-591 |
1.91e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 321 EIDQLAQQLERHKEEvLETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLE 400
Cdd:COG4942 21 AAAEAEAELEQLQQE-IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL---AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 401 QEKQRLSKKVEsfavterqltlevERMRLEHGIKRRDRspsrlDTFLKGIEEERDYYKKeLERLQHIIQRRscstsysar 480
Cdd:COG4942 97 AELEAQKEELA-------------ELLRALYRLGRQPP-----LALLLSPEDFLDAVRR-LQYLKYLAPAR--------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 481 ekssifrtpekgdyNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAp 560
Cdd:COG4942 149 --------------REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA- 213
|
250 260 270
....*....|....*....|....*....|.
gi 50083279 561 hNIVSLMEKEKELAlSDLRRIMAEKEALREK 591
Cdd:COG4942 214 -ELAELQQEAEELE-ALIARLEAEAAAAAER 242
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
627-840 |
2.06e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 627 LKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQlqrSVDDYQHRLSIKRGELESAQAQIKILEE 706
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKI-------DHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 707 KIdeLNLKMTSQDEEAHV---------MKKTIGVIDKEKDFLQE---------TVDEKTEKIANLQENLANKEKAVAQMK 768
Cdd:PHA02562 242 EL--LNLVMDIEDPSAALnklntaaakIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 769 IMISECESSVNQ----------LKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEIS 838
Cdd:PHA02562 320 TAIDELEEIMDEfneqskklleLKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399
|
..
gi 50083279 839 LE 840
Cdd:PHA02562 400 KE 401
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
195-357 |
2.90e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 195 IADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELR--EREIERLSVALDGGR--SPDVLSLESRNKTNEKLI 270
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERLDasSDDLAALEEQLEELEAEL 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 271 AHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTE-------IDQLAQQLERHKEEVLETADKE 343
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfaaalGDAVERELRENLEERIDALRAR 781
|
170
....*....|....
gi 50083279 344 LGEAKKEIKRKLSE 357
Cdd:COG4913 782 LNRAEEELERAMRA 795
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
195-387 |
3.31e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 195 IADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIElrerEIERLsvaldGGRSPDvLSLESRNKTNEKLIAHLN 274
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE----RLEPW-----GNFDLD-LSLLLGFKYVSVFVGTVP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 275 IQVDFLQQANKDLEKrIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKE--EVLETADKELGEAKKEIK 352
Cdd:PRK05771 154 EDKLEELKLESDVEN-VEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTpsELIREIKEELEEIEKERE 232
|
170 180 190
....*....|....*....|....*....|....*...
gi 50083279 353 RKLSEMQDLEETMAKLQL---ELNLCQKEKERLSDELL 387
Cdd:PRK05771 233 SLLEELKELAKKYLEELLalyEYLEIELERAEALSKFL 270
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
870-1131 |
4.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 870 AAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHinahhayESQISSM 949
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-------EAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 950 AKAMSRLEEELRHQEDEKATVLNDLSSLrelcikldSGKDIMTQQLNSKNleFERVVVELENVKSESDLLKKQLSNERHT 1029
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL--------GRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 1030 VKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQIstERYERER 1109
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEA 236
|
250 260
....*....|....*....|..
gi 50083279 1110 AIQEMRRHGLATPPLSSTLRSP 1131
Cdd:COG4942 237 AAAAERTPAAGFAALKGKLPWP 258
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
704-823 |
5.55e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 704 LEEKIDELNLKMtsQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLK- 782
Cdd:COG2433 378 IEEALEELIEKE--LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARs 455
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 50083279 783 --ETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 823
Cdd:COG2433 456 eeRREIRKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
304-410 |
8.35e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 39.69 E-value: 8.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 304 EVVNLSNKNEKLCQELTEIDQLAQQLERHKEEV---LETADKELGeAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKE 380
Cdd:pfam15294 134 EIERLKEENEKLKERLKTLESQATQALDEKSKLekaLKDLQKEQG-AKKDVKSNLKEISDLEEKMAALKSDLEKTLNAST 212
|
90 100 110
....*....|....*....|....*....|....*
gi 50083279 381 RLSDELLV-----KSDLETVVHQLEQEKQRLSKKV 410
Cdd:pfam15294 213 ALQKSLEEdlastKHELLKVQEQLEMAEKELEKKF 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
307-517 |
9.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 307 NLSNKNEKLCQELTEIDQLAQQLERHKEEV---LETADKELGEAKKEIKRKLSEMQDLEETMAKLQLELNLCQKEKERLS 383
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALlkqLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 384 DELlvKSDLETVVHQLEQEKQRLSKKVESFAVTERQLtleverMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELER 463
Cdd:COG4942 104 EEL--AELLRALYRLGRQPPLALLLSPEDFLDAVRRL------QYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 50083279 464 LQHII-----QRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEK 517
Cdd:COG4942 176 LEALLaeleeERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
413-800 |
9.45e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 413 FAVTERQLTLEVERMRlehgikRRDRSPSRLDTFLKGIEEERdyyKKELERLQHIIQRRSCSTSYSAREKSSIFR--TPE 490
Cdd:PLN02939 23 FYLPSRRRLAVSCRAR------RRGFSSQQKKKRGKNIAPKQ---RSSNSKLQSNTDENGQLENTSLRTVMELPQksTSS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 491 KGDYNSEIHQITRERDELQrmLERFEKYMEDIQ-SNVKLltaerdklsvlyneaqEELSALRKestqtTAPHNIVsLMEK 569
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAID--NEQQTNSKDGEQlSDFQL----------------EDLVGMIQ-----NAEKNIL-LLNQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 570 EKELALSDLRRIMAEKEALREKLEHIE----------EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVL------- 632
Cdd:PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEmrlsetdariKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHslskeld 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 633 IMKETIESLENKLKVQAQKFSHVAgdsshqKTEVNSLRIVNEQ--LQRSVDDYQHRLSIKRGE-LESAQAQIKILEEKID 709
Cdd:PLN02939 230 VLKEENMLLKDDIQFLKAELIEVA------ETEERVFKLEKERslLDASLRELESKFIVAQEDvSKLSPLQYDCWWEKVE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 710 ELNL---KMTSQDEEAHVMKKTIGVIDKEKDFLQETVDE------KTEKIANLQENLANKE----KAVAQMKIMISECES 776
Cdd:PLN02939 304 NLQDlldRATNQVEKAALVLDQNQDLRDKVDKLEASLKEanvskfSSYKVELLQQKLKLLEerlqASDHEIHSYIQLYQE 383
|
410 420
....*....|....*....|....
gi 50083279 777 SVNQLKETLVNRDREinSLRRQLD 800
Cdd:PLN02939 384 SIKEFQDTLSKLKEE--SKKRSLE 405
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
479-824 |
9.74e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 479 AREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTT 558
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 559 A-----PHNIVSL----MEKEKEL---------ALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKtiehltcvnhqL 620
Cdd:pfam07888 129 ArirelEEDIKTLtqrvLERETELermkerakkAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQE-----------L 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 621 ESEKYELKSKVLIMKETIESLENKLKVQAQKFShvagDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQ 700
Cdd:pfam07888 198 RNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA----ENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50083279 701 IKILEEKIDELNLKMTsqdEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQmkimisecESSVNQ 780
Cdd:pfam07888 274 LHQARLQAAQLTLQLA---DASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQE--------ERMERE 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 50083279 781 LKETLVNRDREINslRRQLDAAHKELDEVGRSREIAFKENRRLQ 824
Cdd:pfam07888 343 KLEVELGREKDCN--RVQLSESRRELQELKASLRVAQKEKEQLQ 384
|
|
| |
