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Conserved domains on  [gi|118344452|ref|NP_079967|]
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signal recognition particle subunit SRP72 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 4.18e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


:

Pssm-ID: 462494  Cd Length: 53  Bit Score: 75.48  E-value: 4.18e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 118344452  532 KKGGKVTGDNQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-473 2.72e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 2.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 180 YNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPQAELAiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEA--------------LELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 260 VALLAVIANniitINKDQNVFDskkkvkltNAEGVEFKLSKRQLQAIEFNKALLAMY--TNQAEQCRKIAASLQSQSPEY 337
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD--------RAEELLEKLLELDPDDAEALRLLAEIYeqEGDWEKAIEVLERLLKLGPEN 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 338 LLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIeeLRHKPGMVSALVTM-- 415
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLae 220

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 118344452 416 -YSHEEDIDSAIEVFTQAIQwyqsHQPKSPAHLSLireaANFKLKYGRKKEAVSDLEQL 473
Cdd:COG2956  221 lYEKLGDPEEALELLRKALE----LDPSDDLLLAL----ADLLERKEGLEAALALLERQ 271
SRP_TPR_like super family cl25252
Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold ...
 51-154 9.01e-10

Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.


The actual alignment was detected with superfamily member pfam17004:

Pssm-ID: 435703 [Multi-domain]  Cd Length: 109  Bit Score: 56.24  E-value: 9.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452   51 KVVCLIQNGSFKEALnvinthtKVLANNSlsFEKAYCEYRLNRIENALKTIESATqqTDKLKELYGQVLYRLERYDEcla 130
Cdd:pfam17004  20 KVIALIHLDKYKEAL-------KYAKKGS--FEKAYALYKLKKYKKALKILRKMD--SEGSRVLASQCLYFLGYYNK--- 85

                          90       100
                  ....*....|....*....|....
gi 118344452  131 VYRDLvrnSQDDYDEERKTNLSAV 154
Cdd:pfam17004  86 AYKIL---SECKRDDEIVVNLQAM 106
 
Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 4.18e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


Pssm-ID: 462494  Cd Length: 53  Bit Score: 75.48  E-value: 4.18e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 118344452  532 KKGGKVTGDNQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-473 2.72e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 2.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 180 YNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPQAELAiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEA--------------LELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 260 VALLAVIANniitINKDQNVFDskkkvkltNAEGVEFKLSKRQLQAIEFNKALLAMY--TNQAEQCRKIAASLQSQSPEY 337
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD--------RAEELLEKLLELDPDDAEALRLLAEIYeqEGDWEKAIEVLERLLKLGPEN 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 338 LLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIeeLRHKPGMVSALVTM-- 415
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLae 220

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 118344452 416 -YSHEEDIDSAIEVFTQAIQwyqsHQPKSPAHLSLireaANFKLKYGRKKEAVSDLEQL 473
Cdd:COG2956  221 lYEKLGDPEEALELLRKALE----LDPSDDLLLAL----ADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-503 1.20e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 1.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452   24 NSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINthtKVLAnnsLSFEKAYCEYRLNRIENALKTIES 103
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR---KAIA---LRPNNIAVLLALATILIEAGEFEE 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  104 ATQQTDKLKELYGQVLyrLERYdeclavYRDLVRNSQDDYDEERKTNLSAVVAAqsnwekvvPENLglqegthELCYNAA 183
Cdd:TIGR02917 246 AEKHADALLKKAPNSP--LAHY------LKALVDFQKKNYEDARETLQDALKSA--------PEYL-------PALLLAG 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  184 CALIGQGQLTQAMKILQKAEDLcrrsfsedsdgAEEDPQAELAiihgqMAYIMQLQGRTEEALQLYNQIIKLKPTDVALL 263
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKY-----------APNSHQARRL-----LASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  264 AVIANNIItinkdqnvfdskKKVKLTNAEGVEFKLSKR--QLQAIEFNKALLAMYTNQAEQCRK---IAASLQSQSPEYL 338
Cdd:TIGR02917 367 SLLGEAYL------------ALGDFEKAAEYLAKATELdpENAAARTQLGISKLSQGDPSEAIAdleTAAQLDPELGRAD 434

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  339 LPVLIQAAQLCREKQHTKAIELLQEfsdQHPENAAeIKLTMAQLKISQGNISKACLILRsiEELRHKPGMVSA---LVTM 415
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEK---KQPDNAS-LHNLLGAIYLGKGDLAKAREAFE--KALSIEPDFFPAaanLARI 508

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  416 YSHEEDIDSAIEVFTQAIQWYqshqpksPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYsLVD 495
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY-LGK 580


                  ....*...
gi 118344452  496 PEKAKALS 503
Cdd:TIGR02917 581 GQLKKALA 588
SRP_TPR_like pfam17004
Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold ...
 51-154 9.01e-10

Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.


Pssm-ID: 435703 [Multi-domain]  Cd Length: 109  Bit Score: 56.24  E-value: 9.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452   51 KVVCLIQNGSFKEALnvinthtKVLANNSlsFEKAYCEYRLNRIENALKTIESATqqTDKLKELYGQVLYRLERYDEcla 130
Cdd:pfam17004  20 KVIALIHLDKYKEAL-------KYAKKGS--FEKAYALYKLKKYKKALKILRKMD--SEGSRVLASQCLYFLGYYNK--- 85

                          90       100
                  ....*....|....*....|....
gi 118344452  131 VYRDLvrnSQDDYDEERKTNLSAV 154
Cdd:pfam17004  86 AYKIL---SECKRDDEIVVNLQAM 106
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 89-264 2.31e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 2.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  89 YRLNRIENALKTIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDDydeerktnlsavvaaqsnwekvv 165
Cdd:COG3914   89 QALGRYEEALALYRRALALNPDNAEALfnlGNLLLALGRLEEALAALRRALALNPDF----------------------- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 166 penlglqegtHELCYNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPqaELAIIHGQMAYIMQLQGRTEEA 245
Cdd:COG3914  146 ----------AEAYLNLGEALRRLGRLEEAIAALRRA--------------LELDP--DNAEALNNLGNALQDLGRLEEA 199

                        170
                 ....*....|....*....
gi 118344452 246 LQLYNQIIKLKPTDVALLA 264
Cdd:COG3914  200 IAAYRRALELDPDNADAHS 218
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-142 6.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 6.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  21 YGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNS-LSFEKAYCEYRLNRIENALK 99
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPeARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 118344452 100 TIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDD 142
Cdd:COG4783   94 LLEKALKLDPEHPEAYlrlARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
180-255 9.62e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 9.62e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 118344452  180 YNAACALIGQGQLTQAMKILQKAEDLCRRSFSEDSDGaeedpqaeLAIIHGQMAYIMQLQGRTEEALQLYNQIIKL 255
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPL--------TATTLLNLGRLYLELGRYEEALELLERALAL 74
 
Name Accession Description Interval E-value
SRP72 pfam08492
SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 ...
 532-584 4.18e-17

SRP72 RNA-binding domain; This region has been identified as the binding site of the SRP72 protein to SRP RNA.


Pssm-ID: 462494  Cd Length: 53  Bit Score: 75.48  E-value: 4.18e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 118344452  532 KKGGKVTGDNQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERS 584
Cdd:pfam08492   1 KKKSKVSPSTPPKEEVQKKKKKKKRKRKGKLPKNFDPGVTPDPERWLPLRERS 53
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 180-473 2.72e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.83  E-value: 2.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 180 YNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPQAELAiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEA--------------LELDPETVEA--HLALGNLYRRRGEYDRAIRIHQKLLERDPDR 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 260 VALLAVIANniitINKDQNVFDskkkvkltNAEGVEFKLSKRQLQAIEFNKALLAMY--TNQAEQCRKIAASLQSQSPEY 337
Cdd:COG2956   76 AEALLELAQ----DYLKAGLLD--------RAEELLEKLLELDPDDAEALRLLAEIYeqEGDWEKAIEVLERLLKLGPEN 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 338 LLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIeeLRHKPGMVSALVTM-- 415
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYEEAIAALERA--LEQDPDYLPALPRLae 220

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 118344452 416 -YSHEEDIDSAIEVFTQAIQwyqsHQPKSPAHLSLireaANFKLKYGRKKEAVSDLEQL 473
Cdd:COG2956  221 lYEKLGDPEEALELLRKALE----LDPSDDLLLAL----ADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-503 1.20e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 1.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452   24 NSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINthtKVLAnnsLSFEKAYCEYRLNRIENALKTIES 103
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR---KAIA---LRPNNIAVLLALATILIEAGEFEE 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  104 ATQQTDKLKELYGQVLyrLERYdeclavYRDLVRNSQDDYDEERKTNLSAVVAAqsnwekvvPENLglqegthELCYNAA 183
Cdd:TIGR02917 246 AEKHADALLKKAPNSP--LAHY------LKALVDFQKKNYEDARETLQDALKSA--------PEYL-------PALLLAG 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  184 CALIGQGQLTQAMKILQKAEDLcrrsfsedsdgAEEDPQAELAiihgqMAYIMQLQGRTEEALQLYNQIIKLKPTDVALL 263
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKY-----------APNSHQARRL-----LASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  264 AVIANNIItinkdqnvfdskKKVKLTNAEGVEFKLSKR--QLQAIEFNKALLAMYTNQAEQCRK---IAASLQSQSPEYL 338
Cdd:TIGR02917 367 SLLGEAYL------------ALGDFEKAAEYLAKATELdpENAAARTQLGISKLSQGDPSEAIAdleTAAQLDPELGRAD 434

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  339 LPVLIQAAQLCREKQHTKAIELLQEfsdQHPENAAeIKLTMAQLKISQGNISKACLILRsiEELRHKPGMVSA---LVTM 415
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEK---KQPDNAS-LHNLLGAIYLGKGDLAKAREAFE--KALSIEPDFFPAaanLARI 508

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  416 YSHEEDIDSAIEVFTQAIQWYqshqpksPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYsLVD 495
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY-LGK 580


                  ....*...
gi 118344452  496 PEKAKALS 503
Cdd:TIGR02917 581 GQLKKALA 588
SRP_TPR_like pfam17004
Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold ...
 51-154 9.01e-10

Putative TPR-like repeat; This is a family of microsporidial sequences that are likely to fold into a TPR-like structure. Many sequences are annotated as being signal recognition proteins.


Pssm-ID: 435703 [Multi-domain]  Cd Length: 109  Bit Score: 56.24  E-value: 9.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452   51 KVVCLIQNGSFKEALnvinthtKVLANNSlsFEKAYCEYRLNRIENALKTIESATqqTDKLKELYGQVLYRLERYDEcla 130
Cdd:pfam17004  20 KVIALIHLDKYKEAL-------KYAKKGS--FEKAYALYKLKKYKKALKILRKMD--SEGSRVLASQCLYFLGYYNK--- 85

                          90       100
                  ....*....|....*....|....
gi 118344452  131 VYRDLvrnSQDDYDEERKTNLSAV 154
Cdd:pfam17004  86 AYKIL---SECKRDDEIVVNLQAM 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-322 1.23e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 1.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  55 LIQNGSFKEALNVINthtKVLANNSLSFE----KAYCEYRLNRIENALKTIESATQQTDKLKELY---GQVLYRLERYDE 127
Cdd:COG2956   18 YLLNGQPDKAIDLLE---EALELDPETVEahlaLGNLYRRRGEYDRAIRIHQKLLERDPDRAEALlelAQDYLKAGLLDR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 128 CLAVYRDLVrnSQDDYDEERKTNLSAVVAAQSNWEK---VVPENLGLQEGTHELCYNAACALIGQGQLTQAMKILQKAed 204
Cdd:COG2956   95 AEELLEKLL--ELDPDDAEALRLLAEIYEQEGDWEKaieVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA-- 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 205 lcrrsfsedsdgAEEDPQAELAIIhgQMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAVIANNIITINKDQNVFDS-K 283
Cdd:COG2956  171 ------------LKLDPDCARALL--LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELlR 236

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 118344452 284 KKVKLTNAEGVEFKLSkRQLQAIEFNKALLAMYTNQAEQ 322
Cdd:COG2956  237 KALELDPSDDLLLALA-DLLERKEGLEAALALLERQLRR 274
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 166-455 7.15e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 7.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 166 PENLGLQEGTHELCYNAACALIGQGQLTQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYIMQLQGRTEEA 245
Cdd:COG3914   18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEA 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 246 LQLYNQIIKLKPTDVALLAVIANNIITINkdqnvfdskkkvKLTNAEGVeFKlskrqlQAIEFNKALLAMYTN------- 318
Cdd:COG3914   98 LALYRRALALNPDNAEALFNLGNLLLALG------------RLEEALAA-LR------RALALNPDFAEAYLNlgealrr 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 319 -----QAEQCRKIAASLQSQSPEyllpVLIQAAQLCRE-KQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKA 392
Cdd:COG3914  159 lgrleEAIAALRRALELDPDNAE----ALNNLGNALQDlGRLEEAIAAYRRALELDPDN-ADAHSNLLFALRQACDWEVY 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 118344452 393 CLILRSIEELRHKPGMVSALVTMYSHEediDSAIEVFTQAIQWYQSHQPKSPAHLSLIREAAN 455
Cdd:COG3914  234 DRFEELLAALARGPSELSPFALLYLPD---DDPAELLALARAWAQLVAAAAAPELPPPPNPRD 293
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 89-264 2.31e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 2.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  89 YRLNRIENALKTIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDDydeerktnlsavvaaqsnwekvv 165
Cdd:COG3914   89 QALGRYEEALALYRRALALNPDNAEALfnlGNLLLALGRLEEALAALRRALALNPDF----------------------- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 166 penlglqegtHELCYNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPqaELAIIHGQMAYIMQLQGRTEEA 245
Cdd:COG3914  146 ----------AEAYLNLGEALRRLGRLEEAIAALRRA--------------LELDP--DNAEALNNLGNALQDLGRLEEA 199

                        170
                 ....*....|....*....
gi 118344452 246 LQLYNQIIKLKPTDVALLA 264
Cdd:COG3914  200 IAAYRRALELDPDNADAHS 218
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 183-503 3.27e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 3.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  183 ACALIGQGQLTQAMKILQKAEDLCRRSFSE-------------DSDGAEEDPQAELAIIHG------QMAYIMQLQGRTE 243
Cdd:TIGR02917  97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAEllalrglaylglgQLELAQKSYEQALAIDPRslyaklGLAQLALAENRFD 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  244 EALQL----------------------------------YNQIIKLKPTDVALLAvianNIITINKDQNVFDSKKKvklt 289
Cdd:TIGR02917 177 EARALidevltadpgnvdalllkgdlllslgnielalaaYRKAIALRPNNIAVLL----ALATILIEAGEFEEAEK---- 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  290 NAEGVeFKLSKRQLQAiEFNKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQAAQLCREKQHTKAIELLQEFSDQHP 369
Cdd:TIGR02917 249 HADAL-LKKAPNSPLA-HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  370 ENaAEIKLTMAQLKISQGNISKACLILRSIEEL-RHKPGMVSALVTMYSHEEDIDSAIEVFTQAiqwyQSHQPKSPAHLS 448
Cdd:TIGR02917 327 NS-HQARRLLASIQLRLGRVDEAIATLSPALGLdPDDPAALSLLGEAYLALGDFEKAAEYLAKA----TELDPENAAART 401

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 118344452  449 lirEAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYsLVDPEKAKALS 503
Cdd:TIGR02917 402 ---QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY-LRSGQFDKALA 452
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
116-268 1.48e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 116 GQVLYRLERYDECLAVYRDLVRNSQDDYdeERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHELCYNAACALIGQGQL 192
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELDPDDA--EALYNLGLAYLRLGRYEEALAdyeQALELDPDDAEALNNLGLALQALGRY 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 118344452 193 TQAMKILQKAEDLcrrsfsedsdgaeeDPqaELAIIHGQMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAVIAN 268
Cdd:COG0457   93 EEALEDYDKALEL--------------DP--DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 342-502 1.51e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQLKISQGNISKACLILRSIEEL-RHKPGMVSALVTMYSHEE 420
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERdPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 421 DIDSAIEVFTQAIQwyqshqpKSPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYSLV-DPEKA 499
Cdd:COG2956   91 LLDRAEELLEKLLE-------LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQgDYDEA 163


                 ...
gi 118344452 500 KAL 502
Cdd:COG2956  164 IEA 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 83-268 1.53e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.53  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  83 EKAYCEYRLNRIENALKTIESATQQTDKLKELYGQVLYRLERYDECLAVYRDLVRnsqddydeerktnlsavvaaqsnwe 162
Cdd:COG3914   52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALA------------------------- 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 163 kvvpenlgLQEGTHELCYNAACALIGQGQLTQAMKILQKAEDLcrrsfsedsdgaeedpQAELAIIHGQMAYIMQLQGRT 242
Cdd:COG3914  107 --------LNPDNAEALFNLGNLLLALGRLEEALAALRRALAL----------------NPDFAEAYLNLGEALRRLGRL 162

                        170       180
                 ....*....|....*....|....*.
gi 118344452 243 EEALQLYNQIIKLKPTDVALLAVIAN 268
Cdd:COG3914  163 EEAIAALRRALELDPDNAEALNNLGN 188
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 303-491 4.80e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.99  E-value: 4.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 303 LQAIEFNKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQL 382
Cdd:COG3914   43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNA-EALFNLGNL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 383 KISQGNISKACLILRSIeeLRHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQwyqsHQPKSPAHLSLIreaANFKLK 459
Cdd:COG3914  122 LLALGRLEEALAALRRA--LALNPDFAEAYLNLgeaLRRLGRLEEAIAALRRALE----LDPDNAEALNNL---GNALQD 192

                        170       180       190
                 ....*....|....*....|....*....|..
gi 118344452 460 YGRKKEAVSDLEQLWKQNSKDIHTLAQLISAY 491
Cdd:COG3914  193 LGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 344-480 5.85e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 5.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 344 QAAQLCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELRHK-PGMVSALVTMYSHEEDI 422
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNP-EAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDY 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 118344452 423 DSAIEVFTQAIQwyqshqpKSPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKD 480
Cdd:COG4783   89 DEALALLEKALK-------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-142 6.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 6.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  21 YGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNS-LSFEKAYCEYRLNRIENALK 99
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPeARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 118344452 100 TIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDD 142
Cdd:COG4783   94 LLEKALKLDPEHPEAYlrlARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-254 1.12e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  21 YGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNS----LSFEKAYCEYRLNRIEN 96
Cdd:COG2956   86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA---IEVLERLLKLGPenahAYCELAELYLEQGDYDE 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  97 ALKTIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRnsQDdydeerktnlsavvaaqsnwekvvPENLGLQe 173
Cdd:COG2956  163 AIEALEKALKLDPDCARALlllAELYLEQGDYEEAIAALERALE--QD------------------------PDYLPAL- 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 174 gthelcYNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPQAELAIihgQMAYIMQLQGRTEEALQLYNQII 253
Cdd:COG2956  216 ------PRLAELYEKLGDPEEALELLRKA--------------LELDPSDDLLL---ALADLLERKEGLEAALALLERQL 272


                 .
gi 118344452 254 K 254
Cdd:COG2956  273 R 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
38-256 1.87e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  38 LQINKDDVTALHCKVVCLIQNGSFKEAlnvINTHTKVLANNSLSFE----KAYCEYRLNRIENALKTIESATQQTDKLKE 113
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEA---IEDYEKALELDPDDAEalynLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 114 LY---GQVLYRLERYDECLAVYRDLVRNSQDDYDEERktNLSAVVAAQSNWEKVVP---ENLGLQEGTHELCYNAACALI 187
Cdd:COG0457   78 ALnnlGLALQALGRYEEALEDYDKALELDPDDAEALY--NLGLALLELGRYDEAIEayeRALELDPDDADALYNLGIALE 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 118344452 188 GQGQLTQAMKILQKAEDLCRRSFSEDSDGAEEDPQAELAIIHGQMAYIMQLQGRTEEALQLYNQIIKLK 256
Cdd:COG0457  156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 115-259 3.52e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 3.52e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 115 YGQVLYRLERYDECLAVYRDLVRnsQDDYDEERKTNLSAVVAAQSNWEKVVP---ENLGLQEGTHELCYNAACALIGQGQ 191
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALE--LDPDNPEAFALLGEILLQLGDLDEAIVllhEALELDPDEPEARLNLGLALLKAGD 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 118344452 192 LTQAMKILQKAEDLcrrsfsedsdgAEEDPQAelaiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG4783   88 YDEALALLEKALKL-----------DPEHPEA-----YLRLARAYRALGRPDEAIAALEKALELDPDD 139
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 308-491 4.22e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.06  E-value: 4.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 308 FNKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLI--QAAQlcREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKIS 385
Cdd:COG3071   20 LLEGLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLaaRAAQ--ALGDYERRDEYLAQALELAPEAELAVLLTRAELLLD 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 386 QGNISKAcliLRSIEELR----HKPGMVSALVTMYSHEEDIDSAIEVFTQAIQwyqsHQPKSPAHLSLIREAANFklkyG 461
Cdd:COG3071   98 QGQAEQA---LATLEALRagapRHPQVLRLLLQAYRQLGDWEELLELLPALRK----HKALSAEEAQALERRAYL----G 166

                        170       180       190
                 ....*....|....*....|....*....|...
gi 118344452 462 RKKEAVSDLEQL---WKQNSKDIHTLAQLISAY 491
Cdd:COG3071  167 LLRQAARDAEALkalWKALPRAERRDPELAAAY 199
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
169-268 9.13e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 9.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 169 LGLQEGTHELCYNAACALIGQGQLTQAMKILQKAEDLCRRSFS------------EDSDGAEEDPQAELAI------IHG 230
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEalynlglaylrlGRYEEALADYEQALELdpddaeALN 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 118344452 231 QMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAVIAN 268
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL 118
TPR_12 pfam13424
Tetratricopeptide repeat;
180-255 9.62e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 9.62e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 118344452  180 YNAACALIGQGQLTQAMKILQKAEDLCRRSFSEDSDGaeedpqaeLAIIHGQMAYIMQLQGRTEEALQLYNQIIKL 255
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPL--------TATTLLNLGRLYLELGRYEEALELLERALAL 74
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 185-439 1.11e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  185 ALIGQGQLTQAMKILQKAEDLCRRSfsedsdgaeedPQAELAIIHGQMAyimqlQGRTEEALQLYNQIIKLKPTDVALLA 264
Cdd:TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDS-----------PEAWLMLGRAQLA-----AGDLNKAVSSFKKLLALQPDSALALL 639

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  265 VIAnniitinKDQNVFDSKKKVKLTNAEGVEFKLSKRQLQAIefnKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQ 344
Cdd:TIGR02917 640 LLA-------DAYAVMKNYAKAITSLKRALELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  345 AAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKisQGNISKAcliLRSIEE-LRHKPGMV---SALVTMYSHEE 420
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA--SGNTAEA---VKTLEAwLKTHPNDAvlrTALAELYLAQK 784

                         250
                  ....*....|....*....
gi 118344452  421 DIDSAIEVFTQAIQWYQSH 439
Cdd:TIGR02917 785 DYDKAIKHYQTVVKKAPDN 803
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 10-163 1.30e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 1.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  10 SVPALWSEVNRYGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNS-LSFEKAYCE 88
Cdd:COG2956  109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCArALLLLAELY 188

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 118344452  89 YRLNRIENALKTIESATQQTDKLKELY---GQVLYRLERYDECLAVYRDLVRNSQDDYDeerKTNLSAVVAAQSNWEK 163
Cdd:COG2956  189 LEQGDYEEAIAALERALEQDPDYLPALprlAELYEKLGDPEEALELLRKALELDPSDDL---LLALADLLERKEGLEA 263
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
402-522 1.08e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 402 LRHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWyqshQPKSP-AHLSliREAANFKLkyGRKKEAVSDLEQLWKQN 477
Cdd:COG4785  100 LELDPDLAEAYNNRglaYLLLGDYDAALEDFDRALEL----DPDYAyAYLN--RGIALYYL--GRYELAIADLEKALELD 171

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 118344452 478 SKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALE 522
Cdd:COG4785  172 PNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARE 216
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 311-505 3.16e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 40.28  E-value: 3.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 311 ALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQAAQLC-REKQHTKAIELLQEFSDQHPENAAEIKLtMAQLKISQGNI 389
Cdd:COG3071   57 ARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLlDQGQAEQALATLEALRAGAPRHPQVLRL-LLQAYRQLGDW 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 390 SKACLILRSIEelRHK---PGMVSALVTMySHEEDIDSAIEVFTQAIQWYQSHQPKSPAHLSLIREAANFKLKYGRKKEA 466
Cdd:COG3071  136 EELLELLPALR--KHKalsAEEAQALERR-AYLGLLRQAARDAEALKALWKALPRAERRDPELAAAYARALIALGDHDEA 212

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 118344452 467 VSDLEQLWKQNSKDihTLAQLISAYSLVDPEKA-----KALSKH 505
Cdd:COG3071  213 ERLLREALKRQWDP--RLVRLYGRLQGGDPAKQlkraeKWLKKH 254
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 302-439 3.89e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 3.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 302 QLQAIEFNKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENaAEIKLTMAQ 381
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-PEARLNLGL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 118344452 382 LKISQGNISKACLILRsiEELRHKPGMVSA---LVTMYSHEEDIDSAIEVFTQAIQWYQSH 439
Cdd:COG4783   81 ALLKAGDYDEALALLE--KALKLDPEHPEAylrLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-473 3.92e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 3.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 218 EEDPqaELAIIHGQMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAVIAnniitinkdqNVFDSKKKVKltnaegvefk 297
Cdd:COG0457    2 ELDP--DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLG----------LAYLRLGRYE---------- 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 298 lskrqlQAIEFNKALLAMYTNQAEQCRKIAASLQSQspeyllpvliqaaqlcreKQHTKAIELLQEFSDQHPENaAEIKL 377
Cdd:COG0457   60 ------EALADYEQALELDPDDAEALNNLGLALQAL------------------GRYEEALEDYDKALELDPDD-AEALY 114

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 378 TMAQLKISQGNISKACLILRSIEELrhKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQWYQSHQPKSPAHLSLIREAA 454
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALEL--DPDDADALYNLgiaLEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192

                        250
                 ....*....|....*....
gi 118344452 455 NFKLKYGRKKEAVSDLEQL 473
Cdd:COG0457  193 AEVLLALLLALEQALRKKL 211
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 180-268 4.00e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 180 YNAACALIGQGQLTQAMKILQKAedlcrrsfsedsdgAEEDPQAELAiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTD 259
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKA--------------LELDPDNPEA--FALLGEILLQLGDLDEAIVLLHEALELDPDE 71


                 ....*....
gi 118344452 260 VALLAVIAN 268
Cdd:COG4783   72 PEARLNLGL 80
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 372-501 4.00e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 372 AAEIKLTMAQLKISQGNISKACLILRSIeeLRHKPGMVSALVTM---YSHEEDIDSAIEVFTQAIQwyqshqpKSPAHLS 448
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKA--LELDPDNPEAFALLgeiLLQLGDLDEAIVLLHEALE-------LDPDEPE 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 118344452 449 LIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAYSLV-DPEKAKA 501
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALgRPDEAIA 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 356-480 4.57e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 4.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 356 KAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELRHK-PGMVSALVTMYSHEEDIDSAIEVFTQAIQ 434
Cdd:COG4235    1 EAIARLRQALAANPNDA-EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALA 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 118344452 435 wyqsHQPKSPAHLSLireAANFKLKYGRKKEAVSDLEQLWKQNSKD 480
Cdd:COG4235   80 ----LDPDNPEALYL---LGLAAFQQGDYAEAIAAWQKLLALLPAD 118
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 82-134 5.09e-03

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 36.46  E-value: 5.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 118344452   82 FEKAYCEYRLNRIENALKTIESATQQTDKLK--ELYGQVLYRLERYDECLAVYRD 134
Cdd:pfam12895  27 YLLAQCLFLNGQYKRAYELLRKAKLNGSSLGcrYLFAQCLLKLKKYDEALDALGK 81
TPR_19 pfam14559
Tetratricopeptide repeat;
351-414 5.10e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 5.10e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 118344452  351 EKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKACLILRSIEELRHKPGMVSALVT 414
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNA-EARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 185-267 6.51e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 6.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 185 ALIGQGQLTQAMKILQKAEDLcrrsfsedsdgAEEDPQAelaiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTDVA--- 261
Cdd:COG4235   26 AYLRLGRYDEALAAYEKALRL-----------DPDNADA-----LLDLAEALLAAGDTEEAEELLERALALDPDNPEaly 89


                 ....*.
gi 118344452 262 LLAVIA 267
Cdd:COG4235   90 LLGLAA 95
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 53-163 7.30e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452  53 VCLIQNGSFKEALNVINTHTKVLANNSLSFE-KAYCEYRLNRIENALKTIESATQQTDKLKELY---GQVLYRLERYDEC 128
Cdd:COG4783   12 QALLLAGDYDEAEALLEKALELDPDNPEAFAlLGEILLQLGDLDEAIVLLHEALELDPDEPEARlnlGLALLKAGDYDEA 91

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 118344452 129 LAVYRDLVRNSQDDYDEERktNLSAVVAAQSNWEK 163
Cdd:COG4783   92 LALLEKALKLDPEHPEAYL--RLARAYRALGRPDE 124
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
348-502 8.19e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.45  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 348 LCREKQHTKAIELLQEFSDQHPENAaEIKLTMAQLKISQGNISKAcliLRSIEE-LRHKPGMVSALVTM---YSHEEDID 423
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDA-EALYNLGLAYLRLGRYEEA---LADYEQaLELDPDDAEALNNLglaLQALGRYE 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 424 SAIEVFTQAIQwyqshqpKSPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISAY-SLVDPEKAKAL 502
Cdd:COG0457   94 EALEDYDKALE-------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALeKLGRYEEALEL 166
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 114-265 9.55e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 9.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118344452 114 LYGQVLYRLERYDECLAVYRDLVRNSQDDydeerktnlsavvaaqsnwekvvpenlglqegtHELCYNAACALIGQGQLT 193
Cdd:COG4235   22 LLGRAYLRLGRYDEALAAYEKALRLDPDN---------------------------------ADALLDLAEALLAAGDTE 68

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 118344452 194 QAMKILQKAEDLcrrsfsedsdgaeeDPQAELAiiHGQMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAV 265
Cdd:COG4235   69 EAEELLERALAL--------------DPDNPEA--LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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