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Conserved domains on  [gi|113195682|ref|NP_082905|]
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keratinocyte proline-rich protein [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 281-588 7.66e-10

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 7.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  281 RCQSQGTYGSYTSQRrsqSTSRCLPPR--RLQPSYRSCSPPRHSEP---CYSSCLPSRCSSGSYNYCTPPRRSEPIygsh 355
Cdd:PHA03247 2668 RRLGRAAQASSPPQR---PRRRAARPTvgSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA---- 2740

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  356 cpPRGRPSGCSQRCGPKCRVEISSPCCPRQVPPQRCPVQIPPfrgRSQSCPRQPSWGVSCPDLRPRADPHPFPRSCRPqh 435
Cdd:PHA03247 2741 --PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP---RRLTRPAVASLSESRESLPSPWDPADPPAAVLA-- 2813

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  436 ldRSPESSRQRCPVPAPRPYPRPQPCPSPEPRPYPRPQPCPSPE-------PRPRPCPQPCPSPEPRPCPPLRRFSEPCL 508
Cdd:PHA03247 2814 --PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  509 YPEPCSAPQPVPHPAPRPVPRPRpvhcenPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVPYRQELG 588
Cdd:PHA03247 2892 SRSTESFALPPDQPERPPQPQAP------PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 281-588 7.66e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 7.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  281 RCQSQGTYGSYTSQRrsqSTSRCLPPR--RLQPSYRSCSPPRHSEP---CYSSCLPSRCSSGSYNYCTPPRRSEPIygsh 355
Cdd:PHA03247 2668 RRLGRAAQASSPPQR---PRRRAARPTvgSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA---- 2740

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  356 cpPRGRPSGCSQRCGPKCRVEISSPCCPRQVPPQRCPVQIPPfrgRSQSCPRQPSWGVSCPDLRPRADPHPFPRSCRPqh 435
Cdd:PHA03247 2741 --PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP---RRLTRPAVASLSESRESLPSPWDPADPPAAVLA-- 2813

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  436 ldRSPESSRQRCPVPAPRPYPRPQPCPSPEPRPYPRPQPCPSPE-------PRPRPCPQPCPSPEPRPCPPLRRFSEPCL 508
Cdd:PHA03247 2814 --PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  509 YPEPCSAPQPVPHPAPRPVPRPRpvhcenPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVPYRQELG 588
Cdd:PHA03247 2892 SRSTESFALPPDQPERPPQPQAP------PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 538-579 2.46e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 47.64  E-value: 2.46e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 113195682 538 PGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPN 579
Cdd:NF033845 548 PGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSPDPDPDSDSD 589
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 537-582 2.91e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.40  E-value: 2.91e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 113195682  537 NPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVP 582
Cdd:pfam05887  58 DPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 103
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 448-475 7.52e-03

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 39.55  E-value: 7.52e-03
                         10        20
                 ....*....|....*....|....*...
gi 113195682 448 PVPAPRPYPRPQPCPSPEPRPYPRPQPC 475
Cdd:NF033845 546 PTPGPPVDPEPSPEPEPEPTPDPEPSPD 573
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 281-588 7.66e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.65  E-value: 7.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  281 RCQSQGTYGSYTSQRrsqSTSRCLPPR--RLQPSYRSCSPPRHSEP---CYSSCLPSRCSSGSYNYCTPPRRSEPIygsh 355
Cdd:PHA03247 2668 RRLGRAAQASSPPQR---PRRRAARPTvgSLTSLADPPPPPPTPEPaphALVSATPLPPGPAAARQASPALPAAPA---- 2740

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  356 cpPRGRPSGCSQRCGPKCRVEISSPCCPRQVPPQRCPVQIPPfrgRSQSCPRQPSWGVSCPDLRPRADPHPFPRSCRPqh 435
Cdd:PHA03247 2741 --PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPP---RRLTRPAVASLSESRESLPSPWDPADPPAAVLA-- 2813

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  436 ldRSPESSRQRCPVPAPRPYPRPQPCPSPEPRPYPRPQPCPSPE-------PRPRPCPQPCPSPEPRPCPPLRRFSEPCL 508
Cdd:PHA03247 2814 --PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggdvRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  509 YPEPCSAPQPVPHPAPRPVPRPRpvhcenPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVPYRQELG 588
Cdd:PHA03247 2892 SRSTESFALPPDQPERPPQPQAP------PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
PHA03247 PHA03247
large tegument protein UL36; Provisional
 266-564 6.50e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.10  E-value: 6.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  266 SSQRRSGATFSTCAPRCQSQGTYGSYTSQRRSQSTSRCLPPRRLQPSYRSCSPPRH-SEPCYSSCLPSRCSSGSYNYCTP 344
Cdd:PHA03247 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPAD 2806

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  345 PRRSEPIYGSHCPPRGRPSGcsqrcgpkcrveisspccprQVPPQRCPVQIPPFRGRSQSCPRQPSWGVSCP--DLRPRA 422
Cdd:PHA03247 2807 PPAAVLAPAAALPPAASPAG--------------------PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggDVRRRP 2866

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  423 DPH-PFPRSCRPQHldrsPESSRQRCPVPAPRPYPRPQPCPSPEPRPYPRPQpcpspePRPRPCPQPCPSPEPRPCPPLR 501
Cdd:PHA03247 2867 PSRsPAAKPAAPAR----PPVRRLARPAVSRSTESFALPPDQPERPPQPQAP------PPPQPQPQPPPPPQPQPPPPPP 2936

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 113195682  502 RFSEPCLYPEPCSAPQPVPHPAPRPVPRPRPVHCENPGPRPQpcpLPHPEPmPRPAPCSSPEP 564
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFR---VPQPAP-SREAPASSTPP 2995
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 538-579 2.46e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 47.64  E-value: 2.46e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 113195682 538 PGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPN 579
Cdd:NF033845 548 PGPPVDPEPSPEPEPEPTPDPEPSPDPDPEPSPDPDPDSDSD 589
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 537-582 2.91e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 44.40  E-value: 2.91e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 113195682  537 NPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVP 582
Cdd:pfam05887  58 DPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 103
PHA03247 PHA03247
large tegument protein UL36; Provisional
 387-585 3.05e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 3.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  387 PPQRCPVQIPPFRGRSQSCPRqpswgvscPDLRPrADPHPFPRSCRPqhlDRSPESSRQRCPVPAPRPYPRPQPCPSPEP 466
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPR--------PAPRP-SEPAVTSRARRP---DAPPQSARPRAPVDDRGDPRGPAPPSPLPP 2619

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  467 RPYPRPQPCPSPEPRPRPCPQPCPSPEPRPCPPL-----------RRFSEPCLYPEPCSAPQPVPHPAPRPVPRPRPVHC 535
Cdd:PHA03247 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRddpapgrvsrpRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLA 2699

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 113195682  536 ENPGPRPQPCPLPHP-------EPMPRPAPCSSPEPCGQPVRCPSPCS-----GPNPVPYRQ 585
Cdd:PHA03247 2700 DPPPPPPTPEPAPHAlvsatplPPGPAAARQASPALPAAPAPPAVPAGpatpgGPARPARPP 2761
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
361-570 4.09e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 4.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 361 RPSGCSQRCGPkcrVEISSPCCPRQVPPQRCPVQIPPFRGRSQSCPRQPSwgVSCPDLRPRADPhPFPRSCRPQHLDRSP 440
Cdd:PRK12323 364 RPGQSGGGAGP---ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAP--AAAAAARAVAAA-PARRSPAPEALAAAR 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 441 ESSRQRcPVPAPRPYPRPQPCPSPEPRPYPRPQPCPSPEPRPRPCPQPCPSPEPRPCPPLRRFSE-PCLYPEPCSAPQPV 519
Cdd:PRK12323 438 QASARG-PGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEElPPEFASPAPAQPDA 516

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 113195682 520 PHPAPRPVPRPRPVHCENPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVR 570
Cdd:PRK12323 517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 538-582 4.93e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.63  E-value: 4.93e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 113195682  538 PGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVP 582
Cdd:pfam05887  65 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 109
PHA03247 PHA03247
large tegument protein UL36; Provisional
 305-581 9.83e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 9.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  305 PPRRLQPSYRSCSPPRhsepcysSCLPSRCSsgsynyctpPRRSEPIYGSHcppRGRPSGCSQRCGPKCRVEIS----SP 380
Cdd:PHA03247 2551 PPPPLPPAAPPAAPDR-------SVPPPRPA---------PRPSEPAVTSR---ARRPDAPPQSARPRAPVDDRgdprGP 2611

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  381 CCPRQVPPQRCPVQIPPFRGRSQ-SCPRQPSWGVSCPDLRPRADPHPfPRSCRPQHLDRSPESSRQRCPVPAPRPYPRPQ 459
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAaNEPDPHPPPTVPPPERPRDDPAP-GRVSRPRRARRLGRAAQASSPPQRPRRRAARP 2690

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  460 PC---------PSPEPRPYPRPQPCPSPEPRPRPCPQPCPSpeprpcpplrrFSEPCLYPEPCSAPQPVPHPAprpvprp 530
Cdd:PHA03247 2691 TVgsltsladpPPPPPTPEPAPHALVSATPLPPGPAAARQA-----------SPALPAAPAPPAVPAGPATPG------- 2752

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 113195682  531 rpvhcenpGPRPQPCPlphpepmPRPAPCSSPEPCGQPVRCPSPCSGPNPV 581
Cdd:PHA03247 2753 --------GPARPARP-------PTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 538-582 1.69e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.09  E-value: 1.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 113195682  538 PGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPVRCPSPCSGPNPVP 582
Cdd:pfam05887  67 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
PHA03378 PHA03378
EBNA-3B; Provisional
 346-587 1.93e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.67  E-value: 1.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 346 RRSEPIYGSHCPPRGRPSGCSQrcGPKCRVEISSPCCPRQVPPQRCPVQIPPFRgrSQSCPRQPSWGVScPDLRPRADPH 425
Cdd:PHA03378 586 ASSAPSYAQTPWPVPHPSQTPE--PPTTQSHIPETSAPRQWPMPLRPIPMRPLR--MQPITFNVLVFPT-PHQPPQVEIT 660

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 426 PF-PRSCRPQHLDRSPESSRQRCPVPAPRPYPRPQPcPSPEPRPYPRPQPCPSPEPRPRPCPQPCPSPEPRPCPPLRRFS 504
Cdd:PHA03378 661 PYkPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQP-PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAA 739

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 505 EPCLYPEPCSAPQPVPHPAPRPVPRPRPVHCEN-PGPRPQPCPLPHPEPMPRPAPCSSPEPCGQPV------RCPSPCSG 577
Cdd:PHA03378 740 APGRARPPAAAPGRARPPAAAPGRARPPAAAPGaPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTsmqlmpRAAPGQQG 819

                        250
                 ....*....|
gi 113195682 578 PNPVPYRQEL 587
Cdd:PHA03378 820 PTKQILRQLL 829
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
397-470 4.22e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 43.50  E-value: 4.22e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 113195682 397 PFRGRSQSCPRQPSWGVSCPDLRPRADPHPFPRSCRPQHLDRSPESSRQRCPVPAPRPYPRPQPCPSPEPRPYP 470
Cdd:PRK14960 371 PVQQNGQAEVGLNSQAQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444
PHA03247 PHA03247
large tegument protein UL36; Provisional
 266-586 4.45e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  266 SSQRRSGATFSTCAPRcqsqgTYGSYTSQRRSQSTSRCLPPRRLQPSYRSCSP-PRHSEPCYSSCLPSRCSSGSYNYCTP 344
Cdd:PHA03247 2584 SRARRPDAPPQSARPR-----APVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPsPAANEPDPHPPPTVPPPERPRDDPAP 2658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  345 PRRSEPIYGSHCPPRGRPSGCSQRCGPKCRVEISSPCCPRQVPPQRCPVQIPPFRGRSQSCPrQPSWGVSCPDLRPRADP 424
Cdd:PHA03247 2659 GRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATP-LPPGPAAARQASPALPA 2737

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  425 HPFPRSCRPQHLDRSPESSRQRCPVPAPRPYPRPQPCP-SPEPRPYPRPQPCPSPEPRPRPCPQPCPSPEPRPCPPLRRF 503
Cdd:PHA03247 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682  504 SEPCLYPEPCSAPQPVPHPAPRPVPRPRPVHCENPG-----------------PRPQPCPLPHP--EPMPRPAPCSSPEP 564
Cdd:PHA03247 2818 LPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvapggdvrrrppsrsPAAKPAAPARPpvRRLARPAVSRSTES 2897

                         330       340
                  ....*....|....*....|....*.
gi 113195682  565 CGQP----VRCPSPCSGPNPVPYRQE 586
Cdd:PHA03247 2898 FALPpdqpERPPQPQAPPPPQPQPQP 2923
dnaA PRK14086
chromosomal replication initiator protein DnaA;
366-586 1.10e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.12  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 366 SQRCGPKCRVEISspccprqVPPQRCPVQIPPFRGRSQSCPRqpswgvscpdlRPRADPHPFPRSCRPQHLDRSPESSRQ 445
Cdd:PRK14086  75 SRELGRPIRIAIT-------VDPSAGEPAPPPPHARRTSEPE-----------LPRPGRRPYEGYGGPRADDRPPGLPRQ 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195682 446 RcPVPAPRP-YPRPQpcPSPEPRPYPRPQPCPSPEPRPRPCPQPCPSPEPRPcpplrrFSEPCLYPEPCSAPQPVPHPAP 524
Cdd:PRK14086 137 D-QLPTARPaYPAYQ--QRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPAS------YAPEQERDREPYDAGRPEYDQR 207

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 113195682 525 RPVPRPRPVHCENPGPRPQPCPLPHP--EPMPRPAPcSSPEPCGQPVRCPSPcSGPNPVPYRQE 586
Cdd:PRK14086 208 RRDYDHPRPDWDRPRRDRTDRPEPPPgaGHVHRGGP-GPPERDDAPVVPIRP-SAPGPLAAQPA 269
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 416-473 1.16e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 39.78  E-value: 1.16e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 113195682  416 PDLRPRADPHPFPrscrpqhlDRSPESSRQRCPVPAPRPYPRPQPCPSPEPRPYPRPQ 473
Cdd:pfam05887  59 PEPEPEPEPEPEP--------EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 108
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
448-473 2.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 41.19  E-value: 2.51e-03
                         10        20
                 ....*....|....*....|....*.
gi 113195682 448 PVPAPRPYPRPQPCPSPEPRPYPRPQ 473
Cdd:PRK14960 412 PEPEPEPEPEPEPEPEPEPEPEPEPE 437
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 504-558 4.95e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.85  E-value: 4.95e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 113195682  504 SEPCLYPEPCSAPQPVPHPAPRPVPRPRPVHCENPGPRPQPCPLPHPEPMPRPAP 558
Cdd:pfam05887  57 TDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 536-582 5.34e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.85  E-value: 5.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 113195682  536 ENPGPRPQPCPLPHPEPMPRPAPcsSPEPCGQPVRCPSPCSGPNPVP 582
Cdd:pfam05887  53 DTNGTDPEPEPEPEPEPEPEPEP--EPEPEPEPEPEPEPEPEPEPEP 97
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 536-568 7.47e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 37.46  E-value: 7.47e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 113195682  536 ENPGPRPQPCPLPHPEPMPRPAPCSSPEPCGQP 568
Cdd:pfam05887  79 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 111
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 448-475 7.52e-03

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 39.55  E-value: 7.52e-03
                         10        20
                 ....*....|....*....|....*...
gi 113195682 448 PVPAPRPYPRPQPCPSPEPRPYPRPQPC 475
Cdd:NF033845 546 PTPGPPVDPEPSPEPEPEPTPDPEPSPD 573
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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