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Conserved domains on  [gi|15222340|ref|NP_172201|]
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Ribosomal protein S18 [Arabidopsis thaliana]

Protein Classification

bS18 family ribosomal protein( domain architecture ID 10471228)

bS18 (bS18m and bS18c for mitoribosome and chloroplast) family ribosomal protein is a component of the small ribosomal subunit and it is involved in ribosomal assembly.

Gene Symbol:  rpsR
Gene Ontology:  GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803|27023846

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
176-222 1.01e-17

Ribosomal protein S18;


:

Pssm-ID: 460054  Cd Length: 52  Bit Score: 74.71  E-value: 1.01e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222340   176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLM 222
Cdd:pfam01084   6 DYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
176-222 1.01e-17

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 74.71  E-value: 1.01e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222340   176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLM 222
Cdd:pfam01084   6 DYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 176-226 5.25e-16

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 70.95  E-value: 5.25e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 15222340 176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFTT 226
Cdd:COG0238  28 DYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVV 78
rps18 CHL00077
ribosomal protein S18
 176-224 3.62e-12

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 60.75  E-value: 3.62e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 15222340  176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPF 224
Cdd:CHL00077  29 DYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 168-225 3.09e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 55.12  E-value: 3.09e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222340   168 TEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFT 225
Cdd:TIGR00165  11 TAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYV 68
 
Name Accession Description Interval E-value
Ribosomal_S18 pfam01084
Ribosomal protein S18;
176-222 1.01e-17

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 74.71  E-value: 1.01e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15222340   176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLM 222
Cdd:pfam01084   6 DYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 176-226 5.25e-16

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 70.95  E-value: 5.25e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 15222340 176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFTT 226
Cdd:COG0238  28 DYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVV 78
rps18 CHL00077
ribosomal protein S18
 176-224 3.62e-12

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 60.75  E-value: 3.62e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 15222340  176 DFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPF 224
Cdd:CHL00077  29 DYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 168-225 3.09e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 55.12  E-value: 3.09e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15222340   168 TEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFT 225
Cdd:TIGR00165  11 TAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYV 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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