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Conserved domains on  [gi|240254139|ref|NP_173739|]
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Caleosin-related family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Caleosin super family cl10635
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 50-188 3.72e-53

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


The actual alignment was detected with superfamily member pfam05042:

Pssm-ID: 428275  Cd Length: 169  Bit Score: 167.64  E-value: 3.72e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254139   50 KGFRALGTGRFMSAFVAVFFNMGLSQKTRPvqlfGYILPLFLKPFVCTV------VTTDVYDKDGRFVESKFEEIFNKHA 123
Cdd:pfam05042  28 RGFRALGFGILLSLLAALIIHGNLSYPTRP----SWLPDPFFRIYVKNIhkakhgSDSGTYDTEGRFVPQKFEEIFSKYA 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254139  124 RTHKDALTAKEIKQMLKTNREPYDFIGWLSDFIEWKILHTLAQD-NGLLTEDAVRGVYDGSLFQQL 188
Cdd:pfam05042 104 KTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDkDGRLRKEDVRGVYDGSLFYKI 169
 
Name Accession Description Interval E-value
Caleosin pfam05042
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 50-188 3.72e-53

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


Pssm-ID: 428275  Cd Length: 169  Bit Score: 167.64  E-value: 3.72e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254139   50 KGFRALGTGRFMSAFVAVFFNMGLSQKTRPvqlfGYILPLFLKPFVCTV------VTTDVYDKDGRFVESKFEEIFNKHA 123
Cdd:pfam05042  28 RGFRALGFGILLSLLAALIIHGNLSYPTRP----SWLPDPFFRIYVKNIhkakhgSDSGTYDTEGRFVPQKFEEIFSKYA 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254139  124 RTHKDALTAKEIKQMLKTNREPYDFIGWLSDFIEWKILHTLAQD-NGLLTEDAVRGVYDGSLFQQL 188
Cdd:pfam05042 104 KTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDkDGRLRKEDVRGVYDGSLFYKI 169
 
Name Accession Description Interval E-value
Caleosin pfam05042
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 50-188 3.72e-53

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


Pssm-ID: 428275  Cd Length: 169  Bit Score: 167.64  E-value: 3.72e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254139   50 KGFRALGTGRFMSAFVAVFFNMGLSQKTRPvqlfGYILPLFLKPFVCTV------VTTDVYDKDGRFVESKFEEIFNKHA 123
Cdd:pfam05042  28 RGFRALGFGILLSLLAALIIHGNLSYPTRP----SWLPDPFFRIYVKNIhkakhgSDSGTYDTEGRFVPQKFEEIFSKYA 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 240254139  124 RTHKDALTAKEIKQMLKTNREPYDFIGWLSDFIEWKILHTLAQD-NGLLTEDAVRGVYDGSLFQQL 188
Cdd:pfam05042 104 KTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDkDGRLRKEDVRGVYDGSLFYKI 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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