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Conserved domains on  [gi|22330096|ref|NP_175228|]
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RNI-like superfamily protein [Arabidopsis thaliana]

Protein Classification

FBD domain-containing protein( domain architecture ID 10651840)

FBD domain-containing protein may be associated with nuclear processes in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
308-379 3.32e-14

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 66.78  E-value: 3.32e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22330096    308 SCLWTCqVKVLEISKYDGSFQELKQMGHLLGKLGCLESVKVGVHADNNTEFLQ--ANLLALPRLSSKCnNIQFS 379
Cdd:smart00579   1 ECLLSS-LEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEilKELLSLPRASSSC-QVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
308-379 3.32e-14

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 66.78  E-value: 3.32e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22330096    308 SCLWTCqVKVLEISKYDGSFQELKQMGHLLGKLGCLESVKVGVHADNNTEFLQ--ANLLALPRLSSKCnNIQFS 379
Cdd:smart00579   1 ECLLSS-LEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEilKELLSLPRASSSC-QVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
308-379 3.32e-14

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 66.78  E-value: 3.32e-14
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22330096    308 SCLWTCqVKVLEISKYDGSFQELKQMGHLLGKLGCLESVKVGVHADNNTEFLQ--ANLLALPRLSSKCnNIQFS 379
Cdd:smart00579   1 ECLLSS-LEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEilKELLSLPRASSSC-QVQFL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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