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Conserved domains on  [gi|15227029|ref|NP_178378|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 13325788)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
SCOP:  4001344

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
29-610 5.78e-118

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 370.72  E-value: 5.78e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   29 PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLL 108
Cdd:PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  109 ENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAAR 185
Cdd:PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACellGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  186 MFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMrKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFE 265
Cdd:PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  266 TMVGTALIDMYSKCRCWKSAYIVFTELKDtRNLISWNSVISGMMINGqhetavelfekldseglkpdsatwnslisgfsq 345
Cdd:PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNN--------------------------------- 469
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  346 lgKVIEAFKFFERMLSVVMvPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWArri 425
Cdd:PLN03077 470 --RCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA--- 543
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  426 FDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKP 505
Cdd:PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  506 STEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAA 584
Cdd:PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVwGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703
                        570       580
                 ....*....|....*....|....*.
gi 15227029  585 LERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCS 729
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
296-343 3.15e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.15e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227029   296 RNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGF 343
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
29-610 5.78e-118

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 370.72  E-value: 5.78e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   29 PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLL 108
Cdd:PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  109 ENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAAR 185
Cdd:PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACellGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  186 MFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMrKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFE 265
Cdd:PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  266 TMVGTALIDMYSKCRCWKSAYIVFTELKDtRNLISWNSVISGMMINGqhetavelfekldseglkpdsatwnslisgfsq 345
Cdd:PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNN--------------------------------- 469
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  346 lgKVIEAFKFFERMLSVVMvPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWArri 425
Cdd:PLN03077 470 --RCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA--- 543
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  426 FDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKP 505
Cdd:PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  506 STEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAA 584
Cdd:PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVwGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703
                        570       580
                 ....*....|....*....|....*.
gi 15227029  585 LERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCS 729
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
551-610 1.11e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 57.55  E-value: 1.11e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   551 HLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCS 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
296-343 3.15e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.15e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227029   296 RNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGF 343
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
439-470 1.60e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 1.60e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15227029   439 WNVMISGYGKHGECESAIEIFELLREEKVEPS 470
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
299-333 1.05e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227029   299 ISWNSVISGMMINGQHETAVELFEKLDSEGLKPDS 333
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
29-610 5.78e-118

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 370.72  E-value: 5.78e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   29 PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLL 108
Cdd:PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  109 ENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAAR 185
Cdd:PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACellGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  186 MFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMrKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFE 265
Cdd:PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  266 TMVGTALIDMYSKCRCWKSAYIVFTELKDtRNLISWNSVISGMMINGqhetavelfekldseglkpdsatwnslisgfsq 345
Cdd:PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNN--------------------------------- 469
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  346 lgKVIEAFKFFERMLSVVMvPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWArri 425
Cdd:PLN03077 470 --RCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA--- 543
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  426 FDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKP 505
Cdd:PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  506 STEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAA 584
Cdd:PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVwGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703
                        570       580
                 ....*....|....*....|....*.
gi 15227029  585 LERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCS 729
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
90-610 5.92e-75

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 253.25  E-value: 5.92e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   90 DEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGS-GMNSVTVASVLGGCG---DIEGGMQLHCLAMKSGFEMEVY 165
Cdd:PLN03081  80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPfTLPASTYDALVEACIalkSIRCVKAVYWHVESSGFEPDQY 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  166 VGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLM-RKFSSEEPNdvTFVNAITACASL 244
Cdd:PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMwEDGSDAEPR--TFVVMLRASAGL 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  245 LNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDtRNLISWNSVISGMMINGQHETAVELFEKL 324
Cdd:PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEM 316
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  325 DSEGLKPDSATWNSLISGFSQLGKvieafkffermlsvvmvpslkcltsllsacsdiwtLKNGKEIHGHVIKAAAERDIF 404
Cdd:PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLAL-----------------------------------LEHAKQAHAGLIRTGFPLDIV 361
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  405 VLTSLIDMYMKCGLSSWARRIFDRFePKpKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHC 484
Cdd:PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRM-PR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  485 GNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVI-DQMSEPSSSVYSSLLGSCRQHLDPVLGEEAAMK 563
Cdd:PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIrRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519
                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 15227029  564 LAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
PLN03077 PLN03077
Protein ECB2; Provisional
146-533 1.34e-44

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 170.42  E-value: 1.34e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  146 EGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRkFS 225
Cdd:PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WA 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  226 SEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKdTRNLISWNSVI 305
Cdd:PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMI 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  306 SGMMINGQHETAVELFEkldseglkpdsatwnslisgfsqlgkvieafkffeRMLSVVMVPSLKCLTSLLSACSDIWTLK 385
Cdd:PLN03077 261 SGYFENGECLEGLELFF-----------------------------------TMRELSVDPDLMTITSVISACELLGDER 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  386 NGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKpkDPVFWNVMISGYGKHGECESAIEIFELLREE 465
Cdd:PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--DAVSWTAMISGYEKNGLPDKALETYALMEQD 383
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15227029  466 KVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQeeygykpSTEHI------GCMIDLLGRSGRLREAKEVIDQM 533
Cdd:PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAE-------RKGLIsyvvvaNALIEMYSKCKCIDKALEVFHNI 450
PLN03218 PLN03218
maturation of RBCL 1; Provisional
315-533 6.49e-18

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 88.01  E-value: 6.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   315 ETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHV 394
Cdd:PLN03218  454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   395 IKAAAERDIFVLTSLIDmymKCGLSSWARRIFD-----RFEPKPKDP--VFWNVMISGYGKHGECESAIEIFELLREEKV 467
Cdd:PLN03218  534 RSKNVKPDRVVFNALIS---ACGQSGAVDRAFDvlaemKAETHPIDPdhITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15227029   468 EPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEyGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533
Cdd:PLN03218  611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
30-142 3.57e-14

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 75.68  E-value: 3.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   30 NKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLE 109
Cdd:PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
                         90       100       110
                 ....*....|....*....|....*....|...
gi 15227029  110 NGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC 142
Cdd:PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
PLN03218 PLN03218
maturation of RBCL 1; Provisional
228-533 1.61e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 67.59  E-value: 1.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   228 EPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDT---RNLISWNSV 304
Cdd:PLN03218  434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAgveANVHTFGAL 513
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   305 ISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVV--MVPSLKCLTSLLSACSDIW 382
Cdd:PLN03218  514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAG 593
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   383 TLKNGKE----IHGHVIKAAAErdifVLTSLIDMYMKCGLSSWARRIFD---RFEPKPkDPVFWNVMISGYGKHGECESA 455
Cdd:PLN03218  594 QVDRAKEvyqmIHEYNIKGTPE----VYTIAVNSCSQKGDWDFALSIYDdmkKKGVKP-DEVFFSALVDVAGHAGDLDKA 668
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15227029   456 IEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQeEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533
Cdd:PLN03218  669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
551-610 1.11e-10

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 57.55  E-value: 1.11e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   551 HLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLS 610
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCS 60
PLN03077 PLN03077
Protein ECB2; Provisional
23-209 1.90e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 64.10  E-value: 1.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   23 VILSHSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDeMPERGIASVNA 102
Cdd:PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNI 559
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029  103 AVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGD----IEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCG 178
Cdd:PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRsgmvTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
                        170       180       190
                 ....*....|....*....|....*....|.
gi 15227029  179 EWVLAARMFEKVPhksvVTYNAFISGLMENG 209
Cdd:PLN03077 640 KLTEAYNFINKMP----ITPDPAVWGALLNA 666
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
296-343 3.15e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.15e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227029   296 RNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGF 343
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
327-359 2.15e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 47.34  E-value: 2.15e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227029   327 EGLKPDSATWNSLISGFSQLGKVIEAFKFFERM 359
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
434-483 2.27e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.74  E-value: 2.27e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227029   434 KDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSH 483
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
33-378 7.50e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.57  E-value: 7.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029    33 TFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGI-ASVN---AAVSGLL 108
Cdd:PLN03218  439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVeANVHtfgALIDGCA 518
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   109 ENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGdiEGGmqlhclAMKSGFEmevyvgtslvsmysrcgewVLAARMFE 188
Cdd:PLN03218  519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG--QSG------AVDRAFD-------------------VLAEMKAE 571
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   189 KVPHK-SVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVtFVNAITACASLLNLQYGRQLHGLVMKKEFQFETM 267
Cdd:PLN03218  572 THPIDpDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   268 VGTALIDMYSKCRCWKSAyivFTELKDTRN------LISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLIS 341
Cdd:PLN03218  651 FFSALVDVAGHAGDLDKA---FEILQDARKqgiklgTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 15227029   342 GFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSAC 378
Cdd:PLN03218  728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
193-242 1.08e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 1.08e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227029   193 KSVVTYNAFISGLMENGVMNLVPSVFNLMRKfSSEEPNDVTFVNAITACA 242
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
331-380 4.65e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.89  E-value: 4.65e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227029   331 PDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSD 380
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
335-361 2.38e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.30  E-value: 2.38e-05
                          10        20
                  ....*....|....*....|....*..
gi 15227029   335 TWNSLISGFSQLGKVIEAFKFFERMLS 361
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKE 28
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
65-114 3.45e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.58  E-value: 3.45e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15227029    65 DVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLeNGFCR 114
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILI-NGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
437-467 7.01e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 7.01e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227029   437 VFWNVMISGYGKHGECESAIEIFELLREEKV 467
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
320-380 9.60e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 9.60e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15227029   320 LFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSD 380
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
439-470 1.60e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.98  E-value: 1.60e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15227029   439 WNVMISGYGKHGECESAIEIFELLREEKVEPS 470
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PLN03218 PLN03218
maturation of RBCL 1; Provisional
29-241 1.86e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.87  E-value: 1.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029    29 PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGF--FVDVFTATalVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSG 106
Cdd:PLN03218  577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYTIA--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227029   107 LLE-NGFCRD---AFRMFGDARVSGSGMNSVTVASVLGGCgdieggmqlhclamksgfemevyvgtslvsmySRCGEWVL 182
Cdd:PLN03218  655 LVDvAGHAGDldkAFEILQDARKQGIKLGTVSYSSLMGAC--------------------------------SNAKNWKK 702
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15227029   183 AARMFEKVphKS------VVTYNAFISGLMENGVMNLVPSVFNLMRKFSSeEPNDVTFVNAITAC 241
Cdd:PLN03218  703 ALELYEDI--KSiklrptVSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVAS 764
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
335-367 4.41e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.82  E-value: 4.41e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15227029   335 TWNSLISGFSQLGKVIEAFKFFERMLSVVMVPS 367
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
435-481 9.31e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.72  E-value: 9.31e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15227029   435 DPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSAC 481
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
299-333 1.05e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15227029   299 ISWNSVISGMMINGQHETAVELFEKLDSEGLKPDS 333
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
51-98 1.38e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 1.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15227029    51 RILHaQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIA 98
Cdd:pfam13812   1 SILR-EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIK 47
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
299-329 4.39e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 4.39e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15227029   299 ISWNSVISGMMINGQHETAVELFEKLDSEGL 329
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
297-343 7.89e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 7.89e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15227029   297 NLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGF 343
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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