NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15227939|ref|NP_179388|]
View 

zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

Protein Classification

zinc finger Ran-binding domain-containing protein( domain architecture ID 10651028)

zinc finger Ran-binding domain-containing protein similar to Homo sapiens zinc finger Ran-binding domain-containing protein 2 (ZRANB2) that regulates alternative splicing via a direct interaction with pre-mRNA at sites that resemble the consensus 5' splice site

CATH:  2.20.28.140
Gene Ontology:  GO:0008270|GO:0003723
PubMed:  17210253|11179890|12665246

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 50-74 8.06e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.84  E-value: 8.06e-05
                           10        20
                   ....*....|....*....|....*
gi 15227939     50 GDWICTGCTNNNYASREKCKKCGQS 74
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
228-255 6.48e-04

Zn-finger in Ran binding protein and others;


:

Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.18  E-value: 6.48e-04
                          10        20
                  ....*....|....*....|....*...
gi 15227939   228 RDGDWMCTNCKNHNYASRAECNRCKTTR 255
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPK 28
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 7-31 1.39e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


:

Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.37  E-value: 1.39e-03
                           10        20
                   ....*....|....*....|....*
gi 15227939      7 GDWECLGCRNRNYAFRSFCNRCKQP 31
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 50-74 8.06e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.84  E-value: 8.06e-05
                           10        20
                   ....*....|....*....|....*
gi 15227939     50 GDWICTGCTNNNYASREKCKKCGQS 74
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
228-255 6.48e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.18  E-value: 6.48e-04
                          10        20
                  ....*....|....*....|....*...
gi 15227939   228 RDGDWMCTNCKNHNYASRAECNRCKTTR 255
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPK 28
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 7-31 1.39e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.37  E-value: 1.39e-03
                           10        20
                   ....*....|....*....|....*
gi 15227939      7 GDWECLGCRNRNYAFRSFCNRCKQP 31
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
48-76 1.49e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 35.41  E-value: 1.49e-03
                          10        20
                  ....*....|....*....|....*....
gi 15227939    48 RIGDWICTGCTNNNYASREKCKKCGQSKE 76
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 230-253 1.90e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.99  E-value: 1.90e-03
                           10        20
                   ....*....|....*....|....
gi 15227939    230 GDWMCTNCKNHNYASRAECNRCKT 253
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
5-32 6.87e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 33.48  E-value: 6.87e-03
                          10        20
                  ....*....|....*....|....*...
gi 15227939     5 REGDWECLGCRNRNYAFRSFCNRCKQPR 32
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPK 28
 
Name Accession Description Interval E-value
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 50-74 8.06e-05

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 38.84  E-value: 8.06e-05
                           10        20
                   ....*....|....*....|....*
gi 15227939     50 GDWICTGCTNNNYASREKCKKCGQS 74
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
228-255 6.48e-04

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 36.18  E-value: 6.48e-04
                          10        20
                  ....*....|....*....|....*...
gi 15227939   228 RDGDWMCTNCKNHNYASRAECNRCKTTR 255
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPK 28
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 7-31 1.39e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 35.37  E-value: 1.39e-03
                           10        20
                   ....*....|....*....|....*
gi 15227939      7 GDWECLGCRNRNYAFRSFCNRCKQP 31
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGAP 25
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
48-76 1.49e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 35.41  E-value: 1.49e-03
                          10        20
                  ....*....|....*....|....*....
gi 15227939    48 RIGDWICTGCTNNNYASREKCKKCGQSKE 76
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPKP 29
ZnF_RBZ smart00547
Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. ...
 230-253 1.90e-03

Zinc finger domain; Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.


Pssm-ID: 197784 [Multi-domain]  Cd Length: 25  Bit Score: 34.99  E-value: 1.90e-03
                           10        20
                   ....*....|....*....|....
gi 15227939    230 GDWMCTNCKNHNYASRAECNRCKT 253
Cdd:smart00547   1 GDWECPACTFLNFASRSKCFACGA 24
zf-RanBP pfam00641
Zn-finger in Ran binding protein and others;
5-32 6.87e-03

Zn-finger in Ran binding protein and others;


Pssm-ID: 395516 [Multi-domain]  Cd Length: 30  Bit Score: 33.48  E-value: 6.87e-03
                          10        20
                  ....*....|....*....|....*...
gi 15227939     5 REGDWECLGCRNRNYAFRSFCNRCKQPR 32
Cdd:pfam00641   1 REGDWDCSKCLVQNFATSTKCVACQAPK 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH