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Conserved domains on  [gi|42569638|ref|NP_181086|]
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Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 13416353)

zinc finger CCCH domain-containing protein similar to Arabidopsis thaliana zinc finger CCCH domain-containing protein 28

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
144-170 2.26e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 48.73  E-value: 2.26e-08
                          10        20
                  ....*....|....*....|....*..
gi 42569638   144 WKTRICNKWQTTGYCPFGSHCHFAHGP 170
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
CTH1 super family cl34885
CCCH-type Zn-finger protein [General function prediction only];
66-173 5.10e-06

CCCH-type Zn-finger protein [General function prediction only];


The actual alignment was detected with superfamily member COG5063:

Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.97  E-value: 5.10e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569638  66 EIGKSFFKTK--LCFKF-RAGTCPY--SASSCHFAHSAEELrlppppppnwqetvteasrnresfavslgprGNVAQTLK 140
Cdd:COG5063 220 EQNKPLYKTNpeLCESFtRKGTCPYwiSGVKCQFACRGHGL-------------------------------NELKSKKK 268

                        90       100       110
                ....*....|....*....|....*....|...
gi 42569638 141 SPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Cdd:COG5063 269 KQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSD 301
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
144-170 2.26e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 48.73  E-value: 2.26e-08
                          10        20
                  ....*....|....*....|....*..
gi 42569638   144 WKTRICNKWQTTGYCPFGSHCHFAHGP 170
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
66-173 5.10e-06

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.97  E-value: 5.10e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569638  66 EIGKSFFKTK--LCFKF-RAGTCPY--SASSCHFAHSAEELrlppppppnwqetvteasrnresfavslgprGNVAQTLK 140
Cdd:COG5063 220 EQNKPLYKTNpeLCESFtRKGTCPYwiSGVKCQFACRGHGL-------------------------------NELKSKKK 268

                        90       100       110
                ....*....|....*....|....*....|...
gi 42569638 141 SPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Cdd:COG5063 269 KQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSD 301
ZnF_C3H1 smart00356
zinc finger;
143-170 5.75e-06

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 41.85  E-value: 5.75e-06
                           10        20
                   ....*....|....*....|....*...
gi 42569638    143 NWKTRICNKWQTtGYCPFGSHCHFAHGP 170
Cdd:smart00356   1 KYKTELCKFFKR-GYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
144-170 2.26e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 48.73  E-value: 2.26e-08
                          10        20
                  ....*....|....*....|....*..
gi 42569638   144 WKTRICNKWQTTGYCPFGSHCHFAHGP 170
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
66-173 5.10e-06

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 46.97  E-value: 5.10e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 42569638  66 EIGKSFFKTK--LCFKF-RAGTCPY--SASSCHFAHSAEELrlppppppnwqetvteasrnresfavslgprGNVAQTLK 140
Cdd:COG5063 220 EQNKPLYKTNpeLCESFtRKGTCPYwiSGVKCQFACRGHGL-------------------------------NELKSKKK 268

                        90       100       110
                ....*....|....*....|....*....|...
gi 42569638 141 SPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Cdd:COG5063 269 KQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSD 301
ZnF_C3H1 smart00356
zinc finger;
143-170 5.75e-06

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 41.85  E-value: 5.75e-06
                           10        20
                   ....*....|....*....|....*...
gi 42569638    143 NWKTRICNKWQTtGYCPFGSHCHFAHGP 170
Cdd:smart00356   1 KYKTELCKFFKR-GYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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