NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15232137|ref|NP_186802|]
View 

myb domain protein 57 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 25-130 5.58e-47

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 160.14  E-value: 5.58e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137   25 VRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGNRWSK 104
Cdd:PLN03091  12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91

                         90       100
                 ....*....|....*....|....*.
gi 15232137  105 IAKHLPGRTDNEIKNFWRTKIQRHMK 130
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLKKKLR 117
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 25-130 5.58e-47

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 160.14  E-value: 5.58e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137   25 VRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGNRWSK 104
Cdd:PLN03091  12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91

                         90       100
                 ....*....|....*....|....*.
gi 15232137  105 IAKHLPGRTDNEIKNFWRTKIQRHMK 130
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLKKKLR 117
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 80-123 2.16e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 2.16e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15232137    80 RGNITEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRT 123
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 16-121 3.49e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.20  E-value: 3.49e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137  16 TSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGlKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLH 95
Cdd:COG5147   9 LQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLD 87

                        90       100
                ....*....|....*....|....*.
gi 15232137  96 AKLGNRWSKIAKHLPGRTDNEIKNFW 121
Cdd:COG5147  88 KELGTQWSTIADYKDRRTAQQCVERY 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
80-127 3.65e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 3.65e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15232137     80 RGNITEEEQLLIIQLHAKLG-NRWSKIAKHLPGRTDNEIKNFWRTKIQR 127
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 84-123 4.05e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 58.36  E-value: 4.05e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 15232137  84 TEEEQLLIIQLHAKLG-NRWSKIAKHLPGRTDNEIKNFWRT 123
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 25-130 5.58e-47

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 160.14  E-value: 5.58e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137   25 VRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGNRWSK 104
Cdd:PLN03091  12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91

                         90       100
                 ....*....|....*....|....*.
gi 15232137  105 IAKHLPGRTDNEIKNFWRTKIQRHMK 130
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLKKKLR 117
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 25-168 1.09e-43

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 146.38  E-value: 1.09e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137   25 VRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGNRWSK 104
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137  105 IAKHLPGRTDNEIKNFWRTKI-----------QRHMKVSSENMMNHQHHCSG----------NSQSSGMTTQGSSGKAID 163
Cdd:PLN03212 103 IAGRIPGRTDNEIKNYWNTHLrkkllrqgidpQTHKPLDANNIHKPEEEVSGgqkypiepisSSHTDDTTVNGGDGDSKN 182


                 ....*
gi 15232137  164 TAESF 168
Cdd:PLN03212 183 SINVF 187
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 80-123 2.16e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 69.84  E-value: 2.16e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15232137    80 RGNITEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRT 123
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 16-121 3.49e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.20  E-value: 3.49e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232137  16 TSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGlKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLH 95
Cdd:COG5147   9 LQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLD 87

                        90       100
                ....*....|....*....|....*.
gi 15232137  96 AKLGNRWSKIAKHLPGRTDNEIKNFW 121
Cdd:COG5147  88 KELGTQWSTIADYKDRRTAQQCVERY 113
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
80-127 3.65e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 3.65e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15232137     80 RGNITEEEQLLIIQLHAKLG-NRWSKIAKHLPGRTDNEIKNFWRTKIQR 127
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 84-123 4.05e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 58.36  E-value: 4.05e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 15232137  84 TEEEQLLIIQLHAKLG-NRWSKIAKHLPGRTDNEIKNFWRT 123
Cdd:cd00167   3 TEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 30-87 7.18e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 7.18e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15232137    30 WTMEEDFILFNYILNHGEGlWNSVAKASGlKRTGKSCRLRWLNYLRPDVRRGNITEEE 87
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEE 56
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 27-74 1.43e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 51.74  E-value: 1.43e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15232137    27 KGPWTMEEDFILFNYILNHGEGlWNSVAKASGlKRTGKSCRLRWLNYL 74
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR-WKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
27-76 1.02e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 49.53  E-value: 1.02e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15232137     27 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGlKRTGKSCRLRWLNYLRP 76
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 29-74 1.19e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.41  E-value: 1.19e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15232137  29 PWTMEEDFILFNYILNHGEGLWNSVAKASGlKRTGKSCRLRWLNYL 74
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 84-130 8.60e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.61  E-value: 8.60e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 15232137    84 TEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRTKIQRHMK 130
Cdd:pfam13921   2 TEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH