|
Name |
Accession |
Description |
Interval |
E-value |
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
76-256 |
9.84e-46 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 173.71 E-value: 9.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 76 KEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSALKECVRQLWQGREEQNQKIEEAINNKC 155
Cdd:pfam05911 1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 156 KEWETTKSQLEARIEE------------------LQARQDVT---------TSSVHEDLYPKLEALEKENSALKLQLLSK 208
Cdd:pfam05911 81 KEWEKIKAELEAKLVEteqellraaaendalsrsLQERENLLmklseeksqAEAEIEALKSRLESCEKEINSLKYELHVL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 30679450 209 SEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRVMVRR 256
Cdd:pfam05911 161 SKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRK 208
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-563 |
1.07e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 332 KELEKSNAHVNQLKHELKTSLRRISELEEKVEmveveklQLEMALNGSKEQIEALQSRLKEIEGKL----SEMKKLEAEN 407
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEIEKEIE-------QLEQEEEKLKERLEELEEDLSSLEQEIenvkSELKELEARI 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 408 QELELLLGESGKQMEDLQRQLNKAQVNLS--ELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKD 485
Cdd:TIGR02169 768 EELEEDLHKLEEALNDLEARLSHSRIPEIqaELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30679450 486 AKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQET 563
Cdd:TIGR02169 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-558 |
1.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 326 KHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEmkkLEA 405
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE---AEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 406 ENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLeltmclngtkKQLETSQNRLKETERKLTELQTLLHLTKD 485
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL----------RAAAELAAQLEELEEAEEALLERLERLEE 421
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30679450 486 AKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELE 558
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-606 |
1.13e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 347 ELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEM-KKLEAENQELELLLGESGKQMEDLQ 425
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELeLELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 426 RQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIE 505
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 506 SRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQETepapnhikgfELKQEKELAVAA 585
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA----------LEEAAEEEAELE 455
|
250 260
....*....|....*....|.
gi 30679450 586 SKFAECQRTIASLGQRLQSLA 606
Cdd:COG1196 456 EEEEALLELLAELLEEAALLE 476
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
325-558 |
1.16e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 325 RKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKK-- 402
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEel 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 403 --LEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELtmcLNGTKKQLETSQNRLKETERKLTELQTLL 480
Cdd:COG1196 333 eeLEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---LEELAEELLEALRAAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30679450 481 HLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELE 558
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
332-606 |
1.44e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 332 KELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKL----SEMKKLEAEN 407
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyellAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 408 QELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELtmcLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAK 487
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE---LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 488 EAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQETEpap 567
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE--- 458
|
250 260 270
....*....|....*....|....*....|....*....
gi 30679450 568 NHIKGFELKQEKELAVAASKFAECQRTIASLGQRLQSLA 606
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-531 |
1.64e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 166 EARIEELQARQDVTTSSVHE------DLYPKLEALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQLEGIKK 239
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAElekalaELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 240 LTKLEAECRKLRVmvRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPSEKIIGKSSMATSVDIGLMDDFLEMEKLAAlP 319
Cdd:TIGR02168 756 LTELEAEIEELEE--RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER-R 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 320 HSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEkvemveveklQLEMALNGSKEQIEALQSRLKEIEGKLSE 399
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES----------ELEALLNERASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 400 MKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTM-----CLNGTKKQLETSQNRLKETERKLT 474
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLeeaeaLENKIEDDEEEARRRLKRLENKIK 982
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 30679450 475 ELQTLlhltkdaKEAAEDGLkaangktEAIESRLKDVEAEAESLILKIKSLEDVTEK 531
Cdd:TIGR02168 983 ELGPV-------NLAAIEEY-------EELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
329-558 |
5.51e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 329 ESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEmvevekLQLEMALNGSKEQIEALQSRLKEiegKLSEMKKLEAENQ 408
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ------LRVKEKIGELEAEIASLERSIAE---KERELEDAEERLA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 409 ELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETS-----------QNRLKETERKLTELQ 477
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetrdelkdyREKLEKLKREINELK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 478 TLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLE-------DVTEKERALSAKHNSKCNELQDEI 550
Cdd:TIGR02169 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEwkleqlaADLSKYEQELYDLKEEYDRVEKEL 485
|
....*...
gi 30679450 551 SKLKQELE 558
Cdd:TIGR02169 486 SKLQRELA 493
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-599 |
9.08e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 9.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 326 KHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEmkkLEA 405
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE---AEA 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 406 ENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLE----LTMCLNGTKKQLETSQNRLKETERKLTELQTLLH 481
Cdd:TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRErlesLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 482 LTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLED-VTEKERALS------AKHNSKCNELQDEISKLK 554
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESkRSELRRELEelreklAQLELRLEGLEVRIDNLQ 942
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 30679450 555 QELEHHQETEPApnHIKGFELKQEKELAVAASKFAECQRTIASLG 599
Cdd:TIGR02168 943 ERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-562 |
1.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEMALNGSKEQIEALQSRLKEIEGKLSEMKK-LEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELT 449
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 450 MCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEA-------IESRLKDVEAEAESLILKI 522
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanLRERLESLERRIAATERRL 840
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 30679450 523 KSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQE 562
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
325-562 |
1.82e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 325 RKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEmkkLE 404
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE---LE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 405 AENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTmcLNGTKKQLETSQNRLKETERKLTELQTLLHLTK 484
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL--LEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30679450 485 DAKEAAEDgLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQE 562
Cdd:COG1196 401 QLEELEEA-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
325-537 |
3.46e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 325 RKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEM-KKL 403
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlRAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 404 EAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLhlt 483
Cdd:COG4942 114 YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL--- 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 30679450 484 KDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSA 537
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-528 |
6.20e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 6.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 51 REEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSALK 130
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 131 ECVRQLWQGREEQNQKIEEAIN--NKCKEWETTKSQLEARIEELQARQDVTTSSVHEDLYPKLEALEKENSALKLQLLSK 208
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAElaAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 209 SEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRKLRVMVRRSDNSSDLKSS--IDNQSDYSGRVSfSDNEMQS 286
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAllLAGLRGLAGAVA-VLIGVEA 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 287 PSEKIIGKSSMATSVDIGLMDD--------FLEMEKLAAL----PHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRR 354
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDevaaaaieYLKAAKAGRAtflpLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 355 ISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVN 434
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 435 LSELETRRAEKLELTmclngtKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAE 514
Cdd:COG1196 695 LEEALLAEEEEEREL------AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
490
....*....|....
gi 30679450 515 AESLILKIKSLEDV 528
Cdd:COG1196 769 LERLEREIEALGPV 782
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
371-556 |
7.56e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 7.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEMALNGSKEQIEALQSRLKEIEGK----LSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKL 446
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 447 EL------TMCLNGTKKQLE--TSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESL 518
Cdd:COG4942 104 EElaellrALYRLGRQPPLAllLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190
....*....|....*....|....*....|....*...
gi 30679450 519 ILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQE 556
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-561 |
9.27e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 9.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 329 ESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEmkkLEAENQ 408
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE---AEAELA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 409 ELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKleltmclngtKKQLETSQNRLKETERKLTELQTLLHLTKDAKE 488
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL----------AAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30679450 489 AAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQ 561
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
326-558 |
1.29e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 326 KHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKK--- 402
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEkle 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 403 -LEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEkleltmclngTKKQLETSQNRLKETERKLTELQtlLH 481
Cdd:TIGR02168 348 eLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ----------LELQIASLNNEIERLEARLERLE--DR 415
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30679450 482 LTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELE 558
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
401-607 |
1.50e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 401 KKLEA--EN-QELELLLGESGKQMEDLQRQLNKA---QVNLSELETRRAEKL-----ELTMCLNGTKKQLETSQNRLKET 469
Cdd:COG1196 179 RKLEAteENlERLEDILGELERQLEPLERQAEKAeryRELKEELKELEAELLllklrELEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 470 ERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDE 549
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 30679450 550 ISKLKQELEHHQETEpapNHIKGFELKQEKELAVAASKFAECQRTIASLGQRLQSLAT 607
Cdd:COG1196 339 LEELEEELEEAEEEL---EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
380-614 |
3.46e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 380 KEQIEALQSRLKEIEGK--LSEMKKLEAENQELElllgesgKQMEDLQRQLNKAQVNLSELETRRAEKLELtmcLNGTKK 457
Cdd:TIGR02169 210 AERYQALLKEKREYEGYelLKEKEALERQKEAIE-------RQLASLEEELEKLTEEISELEKRLEEIEQL---LEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 458 QLEtsqnrlKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSA 537
Cdd:TIGR02169 280 KIK------DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30679450 538 KHNSKCNELQDEISKLKQELEhhqetepapnhikgfelKQEKELAVAASKFAECQRTIASLGQRLQSLATFEDFLIE 614
Cdd:TIGR02169 354 KLTEEYAELKEELEDLRAELE-----------------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
381-614 |
4.07e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 4.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 381 EQIEALQSRLKEIEGKLS--EMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELetrRAEKLELTMCLNGTKKQ 458
Cdd:TIGR02168 213 ERYKELKAELRELELALLvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEEL---RLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 459 LETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAK 538
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 539 HNSKCNELQDEISKLKQELEHHQETEPAPN--------HIKGFELKQEKELAVAAS--------KFAECQRTIASLGQRL 602
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNneierleaRLERLEDRRERLQQEIEEllkkleeaELKELQAELEELEEEL 449
|
250
....*....|..
gi 30679450 603 QSLATFEDFLIE 614
Cdd:TIGR02168 450 EELQEELERLEE 461
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
371-564 |
1.40e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELEtRRAEKLELTM 450
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 451 CLNGTKKQLETSQNRLKETERKLTELQTLLH----LTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLE 526
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEELRELEEeleeLEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190
....*....|....*....|....*....|....*...
gi 30679450 527 DVTEKERAlsakhnsKCNELQDEISKLKQELEHHQETE 564
Cdd:COG4717 213 EELEEAQE-------ELEELEEELEQLENELEAAALEE 243
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-531 |
1.88e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 50 TREEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSAL 129
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 130 KECVRQlwqgrEEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQDVTTSSVHEDLYPKLEALEKENSALKLQLLSKS 209
Cdd:COG1196 417 ERLEEE-----LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 210 EEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAECRK--------------LRVMVRRSDNSSDLKSSIDNQSDY-S 274
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGveaayeaaleaalaAALQNIVVEDDEVAAAAIEYLKAAkA 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 275 GRVSF-SDNEMQSPSEKIIGKSSMATSVDIGLMDDFLEMEKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLR 353
Cdd:COG1196 572 GRATFlPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 354 RISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGEsgKQMEDLQRQLNKAQV 433
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE--ERLEEELEEEALEEQ 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 434 NLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLhltkDAKEA----AEDGLKAANGKTEAIESRLK 509
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI----EALGPvnllAIEEYEELEERYDFLSEQRE 805
|
490 500
....*....|....*....|..
gi 30679450 510 DVEAEAESLILKIKSLEDVTEK 531
Cdd:COG1196 806 DLEEARETLEEAIEEIDRETRE 827
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
333-554 |
2.08e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 333 ELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELEL 412
Cdd:PRK03918 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 413 LlgesGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEd 492
Cdd:PRK03918 298 L----SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE- 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30679450 493 glKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLK 554
Cdd:PRK03918 373 --ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
380-558 |
3.25e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 380 KEQIEALQSRLKEIEGKLSEMKK----LEAENQELELLlgesgKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGT 455
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQknglVDLSEEAKLLL-----QQLSELESQLAEARAELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 456 KKQLETS------QNRLKETERKLTELQTLL---HLTKDAKEAAEDGLKAAngKTEAIESRLKDVEAEAESLILKIKSLE 526
Cdd:COG3206 256 LPELLQSpviqqlRAQLAELEAELAELSARYtpnHPDVIALRAQIAALRAQ--LQQEAQRILASLEAELEALQAREASLQ 333
|
170 180 190
....*....|....*....|....*....|..
gi 30679450 527 DVTEKERALSAKHnskcNELQDEISKLKQELE 558
Cdd:COG3206 334 AQLAQLEARLAEL----PELEAELRRLEREVE 361
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
52-516 |
9.71e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 9.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 52 EEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSAlKE 131
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA-KA 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 132 CVRQLWQGREEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQDVTTSSVhEDLYPKLEALEKENSALKLQLLSKSEE 211
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI-KELKKAIEELKKAKGKCPVCGRELTEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 212 VKIRTIERdlSTQAAESASKQQLEGIKKLTKLEAECRKLRVMVRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPS--- 288
Cdd:PRK03918 449 HRKELLEE--YTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKaee 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 289 -EKIIGKSSMATSVDIGLMDDFLEMEKLaalphsepgrkhsesNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEV 367
Cdd:PRK03918 527 yEKLKEKLIKLKGEIKSLKKELEKLEEL---------------KKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 368 EKLQ-LEMALNgskEQIEALQSRlKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRA--E 444
Cdd:PRK03918 592 ERLKeLEPFYN---EYLELKDAE-KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELreE 667
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30679450 445 KLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDgLKAANGKTEAIESRLKDVEAEAE 516
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKALLK 738
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
458-602 |
1.05e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 458 QLETSQNRLKETERKLTELQTLLHLTKDAKEAAED---GLKAANGKTEAIESRLKDVEAEAE----SLILKIKSLEDVTE 530
Cdd:PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDsvaNLRASLSAAEAERSRLQALLAELAgagaAAEGRAGELAQELD 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30679450 531 KERALSAKHNSKCNELQDEISKLKQELEHHQETepapnhikgfelkqekeLAVAASKFAECQRTIASLGQRL 602
Cdd:PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAA-----------------LDASEKRDRESQAKIADLGRRL 181
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
374-606 |
1.11e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 374 MALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQelelllgesgKQMEDLQRQLNKAQVNLSELETRraekleltmcLN 453
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALK----------KEEKALLKQLAALERRIAALARR----------IR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 454 GTKKQLETSQNRLKETERKLTELQTLLHLTKDA---------KEAAEDGLK---------AANGKTEAIESRLKDVEAEA 515
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEElaellralyRLGRQPPLAlllspedflDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 516 ESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQETEPApnhIKGFELKQEKELAVAASKFAECQRTI 595
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALI 229
|
250
....*....|.
gi 30679450 596 ASLGQRLQSLA 606
Cdd:COG4942 230 ARLEAEAAAAA 240
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-533 |
1.48e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 329 ESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALngsKEQIEALQSRLKEIEGKLSEMKKLEAENQ 408
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL---LEAEAELAEAEEELEELAEELLEALRAAA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 409 ELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKE 488
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 30679450 489 AAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKER 533
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-246 |
1.91e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 51 REEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSALK 130
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 131 ECVRQL--WQGREEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQdvttssvhEDLYPKLEALEKENSALKLQLLSK 208
Cdd:COG1196 299 RLEQDIarLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL--------EEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190
....*....|....*....|....*....|....*...
gi 30679450 209 SEEVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAE 246
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
318-596 |
4.09e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 318 LPHSEPGRKHSESNKELEKSNAHVNQLKH---ELKTSLRRISELEEKVEMVEVEKL-----QLEMALNGSKEQIEALQSR 389
Cdd:PRK05771 36 LKEELSNERLRKLRSLLTKLSEALDKLRSylpKLNPLREEKKKVSVKSLEELIKDVeeeleKIEKEIKELEEEISELENE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 390 LKEIEGKLSEMKKLEAENQELELLLGES------GKQMEDLQRQLnKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQ 463
Cdd:PRK05771 116 IKELEQEIERLEPWGNFDLDLSLLLGFKyvsvfvGTVPEDKLEEL-KLESDVENVEYISTDKGYVYVVVVVLKELSDEVE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 464 NRLKETERKLTELQTllhlTKDAKEAAedglkaangktEAIESRLKDVEAEAESLILKIKSLedvtekeralsakhnskC 543
Cdd:PRK05771 195 EELKKLGFERLELEE----EGTPSELI-----------REIKEELEEIEKERESLLEELKEL-----------------A 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 30679450 544 NELQDEISKLKQELEHhqetepapnhikgfelkqEKELAVAASKFAECQRTIA 596
Cdd:PRK05771 243 KKYLEELLALYEYLEI------------------ELERAEALSKFLKTDKTFA 277
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
380-518 |
5.95e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 380 KEQIEALQSRLKEIEGKLSEMKKL--EAENQELEL---LLGESGKQMEDLQRQLNKAQVNLSELETRRA------EKLEL 448
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARldALREELDELeaqIRGNGGDRLEQLEREIERLERELEERERRRArleallAALGL 373
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 449 TmcLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAangkteaiesRLKDVEAEAESL 518
Cdd:COG4913 374 P--LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR----------ELRELEAEIASL 431
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
371-558 |
6.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEaENQELELLLGESGKQMEDLQRQLNKAQVNLSELEtrraeklELtm 450
Cdd:COG4913 621 ELEEELAEAEERLEALEAELDALQERREALQRLA-EYSWDEIDVASAEREIAELEAELERLDASSDDLA-------AL-- 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 451 clngtKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIEsrlKDVEAEAESLILKIKSLEDVTE 530
Cdd:COG4913 691 -----EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAE---DLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*...
gi 30679450 531 KERALSAKHNSKCNELQDEISKLKQELE 558
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELE 790
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
328-557 |
7.96e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 7.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 328 SESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAEN 407
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQK 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 408 QE----LELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETsqnRLKETERKLTELQTLLHLT 483
Cdd:TIGR04523 411 DEqikkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET---QLKVLSRSINKIKQNLEQK 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30679450 484 KDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLE-DVTEKERALSakhnskcnELQDEISKLKQEL 557
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKIS--------DLEDELNKDDFEL 554
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
381-567 |
9.29e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 381 EQIEALQSRLKEIEGKLSEMKKLEAENQELElllgesgKQMEDLQRQLNKAQVNLSELETRRAEKleltmclngtKKQLE 460
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELE-------DELAALEARLEAAKTELEDLEKEIKRL----------ELEIE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 461 TSQNRLKETERKLT------ELQTLLH---LTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEaeslilkiksLEDVTEK 531
Cdd:COG1579 70 EVEARIKKYEEQLGnvrnnkEYEALQKeieSLKRRISDLEDEILELMERIEELEEELAELEAE----------LAELEAE 139
|
170 180 190
....*....|....*....|....*....|....*.
gi 30679450 532 ERALSAKHNSKCNELQDEISKLKQELEHHQETEPAP 567
Cdd:COG1579 140 LEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
380-558 |
1.09e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 380 KEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTmclNGTKKQL 459
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA---GLDDADA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 460 ETSQNRLKETERKLTELQtllhltkDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKH 539
Cdd:PRK02224 310 EAVEARREELEDRDEELR-------DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR 382
|
170
....*....|....*....
gi 30679450 540 NSKCNELQDEISKLKQELE 558
Cdd:PRK02224 383 REEIEELEEEIEELRERFG 401
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
381-558 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 381 EQIEALQSRLKEIEGKLSE----MKKLEAENQELELLLGEsgKQMEDLQRQLNKAQVNLSELETRRAEKLELtmcLNGTK 456
Cdd:COG4913 255 EPIRELAERYAAARERLAEleylRAALRLWFAQRRLELLE--AELEELRAELARLEAELERLEARLDALREE---LDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 457 KQLETSQ-NRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERal 535
Cdd:COG4913 330 AQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL-- 407
|
170 180
....*....|....*....|...
gi 30679450 536 sAKHNSKCNELQDEISKLKQELE 558
Cdd:COG4913 408 -AEAEAALRDLRRELRELEAEIA 429
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
371-518 |
1.57e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEmALNGSKEQIE---ALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKL- 446
Cdd:PRK11281 44 QLD-ALNKQKLLEAedkLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLs 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30679450 447 --ELTMCLNGTKKQLETSQNRLKETERKLTELQTllhltkdAKEAAEDGLKAANGKTEAIESRLKDVEAEAESL 518
Cdd:PRK11281 123 lrQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT-------QPERAQAALYANSQRLQQIRNLLKGGKVGGKAL 189
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
401-560 |
1.61e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.06 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 401 KKLEAENQELELLLGESGKQMEDLQRQLNKAQVNlseLETRRAEKLELTMCLNGTKKQLETSQNRLKET-----ERKLTE 475
Cdd:pfam00038 124 AKIESLKEELAFLKKNHEEEVRELQAQVSDTQVN---VEMDAARKLDLTSALAEIRAQYEEIAAKNREEaeewyQSKLEE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 476 LQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERalsAKHNSKCNELQDEISKLKQ 555
Cdd:pfam00038 201 LQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYELQL---ADYQELISELEAELQETRQ 277
|
....*
gi 30679450 556 ELEHH 560
Cdd:pfam00038 278 EMARQ 282
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
398-605 |
2.03e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 398 SEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQvnlSELETRRAEKLELTMCLNGTKKQLEtsqnRLKETERKLTELQ 477
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLA----RLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 478 TLLHLTKDAKEAAEDGLKAANGKTEAiesRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQEL 557
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEE---ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 30679450 558 EHHQ----ETEPAPNHIKGFELKQEKELAVAASKFAECQRTIASLGQRLQSL 605
Cdd:TIGR02168 827 ESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
441-605 |
2.35e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 441 RRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLIL 520
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 521 KIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELEHHQEtepapnhikgfELKQEKELAVAASK-FAECQRTIASLG 599
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE-----------ELKALREALDELRAeLTLLNEEAANLR 823
|
....*.
gi 30679450 600 QRLQSL 605
Cdd:TIGR02168 824 ERLESL 829
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
334-605 |
2.75e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 334 LEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELL 413
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 414 LGESGKQMEDLQRQLNKAQVNLSELETRRAEKLEltmclngTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDg 493
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKK-------EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 494 lkaangkteaIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHnskcNELQDEISKLKQELEHHQETEPAPNHIKGF 573
Cdd:PRK03918 312 ----------IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL----KELEKRLEELEERHELYEEAKAKKEELERL 377
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 30679450 574 ELKQ--------EKELAVAASKFAECQRTIASLGQRLQSL 605
Cdd:PRK03918 378 KKRLtgltpeklEKELEELEKAKEEIEEEISKITARIGEL 417
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
422-558 |
3.33e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 422 EDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKT 501
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 30679450 502 EAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNELQDEISKLKQELE 558
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELA 167
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-562 |
4.75e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 407 NQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDA 486
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 487 KEaaedgLKAANGKTEAIESRLKDVEAEAESLILKIKSLE----DVTEKERALSAKHNSKCNELQDEISKLKQELEHHQE 562
Cdd:COG4717 132 QE-----LEALEAELAELPERLEELEERLEELRELEEELEeleaELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
333-519 |
5.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 333 ELEKSNAHVNQLKHELKTSLRRISELEEKVEmveveklQLEMALNGSKEQIEALQSRLKEIEGKLSEMKKLEAENQElEL 412
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELA-------ALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-QL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 413 LLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLEltmclngtkkQLETSQNRLKETERKLTELQTLLhltkdakEAAED 492
Cdd:COG1579 83 GNVRNNKEYEALQKEIESLKRRISDLEDEILELME----------RIEELEEELAELEAELAELEAEL-------EEKKA 145
|
170 180
....*....|....*....|....*..
gi 30679450 493 GLKAANGKTEAIESRLKDVEAEAESLI 519
Cdd:COG1579 146 ELDEELAELEAELEELEAEREELAAKI 172
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
388-481 |
7.92e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.29 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 388 SRLK-EIEGKLSEMKKLEAE----NQELELLLGE----SGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQ 458
Cdd:COG0542 400 ARVRmEIDSKPEELDELERRleqlEIEKEALKKEqdeaSFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE 479
|
90 100
....*....|....*....|...
gi 30679450 459 LETSQNRLKETERKLTELQTLLH 481
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELA 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
332-491 |
8.23e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 332 KELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGS---------KEQIEALQSRLKEIEGKLSEMKK 402
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLplyqelealEAELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 403 LEAENQELELLLGESGKQMEDLQRQLNkaQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRLKETERKLTELQTLLHL 482
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLS--LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
....*....
gi 30679450 483 TKDAKEAAE 491
Cdd:COG4717 239 AALEERLKE 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-605 |
9.98e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 51 REEEATADIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSALEDRNSHLDSALK 130
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 131 ECVRQLwqgrEEQNQKIEEAINNKcKEWETTKSQLEARIEELQARQDVTTSSVHEDLYPKLEALEKENSALKLQLLSKSE 210
Cdd:COG1196 320 ELEEEL----AELEEELEELEEEL-EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 211 EVKIRTIERDLSTQAAESASKQQLEGIKKLTKLEAEcrkLRVMVRRSDNSSDLKSSIDNQSDYSGRVSFSDNEMQSPSEK 290
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEAL---AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 291 IIGKSSMATSVDIGLMDDFLEMEKLAALPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKL 370
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 371 QLEMALNGsKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTM 450
Cdd:COG1196 552 VVEDDEVA-AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30679450 451 CLNGTKKQLETSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAANGKTEAIESRLKDVEAEAESLilkiksLEDVTE 530
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA------LLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30679450 531 KERALSAKHNSKCNELQDEISKLKQELEHHQETEPAPNHIKGFELKQEKELAVAASKFAECQRTIASLGQRLQSL 605
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| |
