NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15237533|ref|NP_198917|]
View 

DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]

Protein Classification

Rpo12/RPC10 RNA polymerase subunit family protein( domain architecture ID 10652796)

Rpo12/RPC10 RNA polymerase subunit family protein similar to DNA-directed RNA polymerases I, II, and III subunit RPABC4, a common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and a small RNAs, such as 5S rRNA and tRNAs, respectively

Gene Ontology:  GO:0006351|GO:0003899|GO:0003677
PubMed:  24219496|18280161

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RPOLCX smart00659
RNA polymerase subunit CX; present in RNA polymerase I, II and III
 8-51 5.11e-18

RNA polymerase subunit CX; present in RNA polymerase I, II and III


:

Pssm-ID: 128906  Cd Length: 44  Bit Score: 68.54  E-value: 5.11e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15237533     8 VTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
Cdd:smart00659  1 MIYICGECGRENEIKSKDVVRCRECGYRILYKKRTKRLVEVKAR 44
 
Name Accession Description Interval E-value
RPOLCX smart00659
RNA polymerase subunit CX; present in RNA polymerase I, II and III
 8-51 5.11e-18

RNA polymerase subunit CX; present in RNA polymerase I, II and III


Pssm-ID: 128906  Cd Length: 44  Bit Score: 68.54  E-value: 5.11e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15237533     8 VTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
Cdd:smart00659  1 MIYICGECGRENEIKSKDVVRCRECGYRILYKKRTKRLVEVKAR 44
DNA_RNApol_7kD pfam03604
DNA directed RNA polymerase, 7 kDa subunit;
10-41 1.13e-12

DNA directed RNA polymerase, 7 kDa subunit;


Pssm-ID: 427393  Cd Length: 32  Bit Score: 54.61  E-value: 1.13e-12
                         10        20        30
                 ....*....|....*....|....*....|..
gi 15237533   10 YVCGDCGQENTLKSGDVIQCRECGYRILYKKR 41
Cdd:pfam03604  1 YICGECGAEVSLKRGDPIRCKECGHRILYKKR 32
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 5-51 2.18e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 34.29  E-value: 2.18e-04
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*...
gi 15237533  5 PEPVTYVCGDCGQENTLKSGDV-IQCRECGYRILYKKRTRRVVQYEAR 51
Cdd:COG1996  1 EAMVEYKCPRCGAEVELDEGTPaIRCPYCGSRIFIKERPPVVKRVKAI 48
rpoP PRK00398
DNA-directed RNA polymerase subunit P; Provisional
 8-43 2.83e-03

DNA-directed RNA polymerase subunit P; Provisional


Pssm-ID: 234747  Cd Length: 46  Bit Score: 31.41  E-value: 2.83e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15237533   8 VTYVCGDCGQENTLKSGDV-IQCRECGYRILYKKRTR 43
Cdd:PRK00398  2 AEYKCARCGREVELDEYGTgVRCPYCGYRILFKERPP 38
 
Name Accession Description Interval E-value
RPOLCX smart00659
RNA polymerase subunit CX; present in RNA polymerase I, II and III
 8-51 5.11e-18

RNA polymerase subunit CX; present in RNA polymerase I, II and III


Pssm-ID: 128906  Cd Length: 44  Bit Score: 68.54  E-value: 5.11e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15237533     8 VTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
Cdd:smart00659  1 MIYICGECGRENEIKSKDVVRCRECGYRILYKKRTKRLVEVKAR 44
DNA_RNApol_7kD pfam03604
DNA directed RNA polymerase, 7 kDa subunit;
10-41 1.13e-12

DNA directed RNA polymerase, 7 kDa subunit;


Pssm-ID: 427393  Cd Length: 32  Bit Score: 54.61  E-value: 1.13e-12
                         10        20        30
                 ....*....|....*....|....*....|..
gi 15237533   10 YVCGDCGQENTLKSGDVIQCRECGYRILYKKR 41
Cdd:pfam03604  1 YICGECGAEVSLKRGDPIRCKECGHRILYKKR 32
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 5-51 2.18e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 34.29  E-value: 2.18e-04
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*...
gi 15237533  5 PEPVTYVCGDCGQENTLKSGDV-IQCRECGYRILYKKRTRRVVQYEAR 51
Cdd:COG1996  1 EAMVEYKCPRCGAEVELDEGTPaIRCPYCGSRIFIKERPPVVKRVKAI 48
rpoP PRK00398
DNA-directed RNA polymerase subunit P; Provisional
 8-43 2.83e-03

DNA-directed RNA polymerase subunit P; Provisional


Pssm-ID: 234747  Cd Length: 46  Bit Score: 31.41  E-value: 2.83e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15237533   8 VTYVCGDCGQENTLKSGDV-IQCRECGYRILYKKRTR 43
Cdd:PRK00398  2 AEYKCARCGREVELDEYGTgVRCPYCGYRILFKERPP 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH