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Conserved domains on  [gi|15239016|ref|NP_199668|]
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FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 10446594)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755|GO:0000413|GO:0061077
PubMed:  27664121
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 60-151 6.02e-45

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 154.18  E-value: 6.02e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  60 DTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPP 139
Cdd:COG0545  12 AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVIPP 91

                        90
                ....*....|..
gi 15239016 140 NATLQFDVELIA 151
Cdd:COG0545  92 NSTLVFEVELLD 103
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
292-390 4.48e-26

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 101.89  E-value: 4.48e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   292 GYERPNEGAIVKLKLIGKLQDGTtVFVkkGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESK 371
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGT-VFD--SSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA 77

                          90
                  ....*....|....*....
gi 15239016   372 QelAVIPPNSTVYYEVELV 390
Cdd:pfam00254  78 G--PVIPPNATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
174-268 1.09e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 89.56  E-value: 1.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   174 KWEKPKDLDEVYVKYEARLEDGTIVGKSDG----VEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPasd 249
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA--- 77

                          90
                  ....*....|....*....
gi 15239016   250 glQAAIPPNATLQIDLELV 268
Cdd:pfam00254  78 --GPVIPPNATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-526 1.33e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 1.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALE-------------LDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                        90       100       110
                ....*....|....*....|....*....|
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:COG0457  80 NNLGLALQALGRYEEALEDYDKALELDPDD 109
 
Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 60-151 6.02e-45

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 154.18  E-value: 6.02e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  60 DTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPP 139
Cdd:COG0545  12 AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVIPP 91

                        90
                ....*....|..
gi 15239016 140 NATLQFDVELIA 151
Cdd:COG0545  92 NSTLVFEVELLD 103
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
61-150 7.53e-43

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 148.50  E-value: 7.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016    61 TPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGS-PPTIPP 139
Cdd:pfam00254   4 KAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 15239016   140 NATLQFDVELI 150
Cdd:pfam00254  84 NATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
292-390 4.48e-26

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 101.89  E-value: 4.48e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   292 GYERPNEGAIVKLKLIGKLQDGTtVFVkkGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESK 371
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGT-VFD--SSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA 77

                          90
                  ....*....|....*....
gi 15239016   372 QelAVIPPNSTVYYEVELV 390
Cdd:pfam00254  78 G--PVIPPNATLVFEVELL 94
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 45-150 6.58e-24

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 101.38  E-value: 6.58e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   45 KSGLKKKLVKEcEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQghVIKGWDLGIKTMKKGENAIFTIPP 124
Cdd:PRK10902 145 STGLLYKVEKE-GTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPP 221

                         90       100
                 ....*....|....*....|....*.
gi 15239016  125 ELAYGETGSpPTIPPNATLQFDVELI 150
Cdd:PRK10902 222 ELAYGKAGV-PGIPANSTLVFDVELL 246
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 285-392 2.85e-23

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 94.48  E-value: 2.85e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 285 KILKEGEGyERPNEGAIVKLKLIGKLQDGTtVFVKKghEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYA 364
Cdd:COG0545   4 KVLKEGTG-AKPKAGDTVTVHYTGTLLDGT-VFDSS--YDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79

                        90       100
                ....*....|....*....|....*...
gi 15239016 365 FGSSESKQelaVIPPNSTVYYEVELVSF 392
Cdd:COG0545  80 YGERGAGG---VIPPNSTLVFEVELLDV 104
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
174-268 1.09e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 89.56  E-value: 1.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   174 KWEKPKDLDEVYVKYEARLEDGTIVGKSDG----VEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPasd 249
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA--- 77

                          90
                  ....*....|....*....
gi 15239016   250 glQAAIPPNATLQIDLELV 268
Cdd:pfam00254  78 --GPVIPPNATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-526 1.33e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 1.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALE-------------LDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                        90       100       110
                ....*....|....*....|....*....|
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:COG0457  80 NNLGLALQALGRYEEALEDYDKALELDPDD 109
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 378-541 2.16e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.75  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   378 PPNSTVYYEVELVSfIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEydstfdeeekkkskDL 457
Cdd:TIGR00990  96 PKNAPVEPADELPE-IDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP--------------DP 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   458 KIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV-------- 529
Cdd:TIGR00990 161 VYYSNR--AACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQsaqaverl 238

                         170
                  ....*....|....
gi 15239016   530 --KIEYKKLKEKVK 541
Cdd:TIGR00990 239 lkKFAESKAKEILE 252
TPR_19 pfam14559
Tetratricopeptide repeat;
473-530 3.04e-06

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 44.88  E-value: 3.04e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15239016   473 KDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVK 530
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 176-271 2.74e-05

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 45.91  E-value: 2.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  176 EKPKDLDEVYVKYEARLEDGTIVGKS--DGVEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPasdglqa 253
Cdd:PRK10902 159 EAPKDSDTVVVNYKGTLIDGKEFDNSytRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP------- 231

                         90
                 ....*....|....*...
gi 15239016  254 AIPPNATLQIDLELVSWK 271
Cdd:PRK10902 232 GIPANSTLVFDVELLDVK 249
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 182-242 4.14e-05

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 43.55  E-value: 4.14e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15239016 182 DEVYVKYEARLEDGTIVGKSDG---VEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGE 242
Cdd:COG1047   5 DVVTLHYTLKLEDGEVFDSTFEgepLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGE 68
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 285-393 9.53e-05

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 43.63  E-value: 9.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  285 KILKEGEGyERPNEGAIVKLKLIGKLQDGTtVF---VKKGheedeEPFEFKIDeeQVIEGLEKAVMGMKKGEVALITISP 361
Cdd:PRK11570 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGT-VFdssVARG-----EPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPH 177

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239016  362 EYAFGSSESKqelAVIPPNSTVYYEVELVSFI 393
Cdd:PRK11570 178 ELAYGERGAG---ASIPPFSTLVFEVELLEIL 206
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 474-530 1.21e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.16  E-value: 1.21e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239016 474 DYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVK 530
Cdd:cd24142  15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 493-526 2.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 2.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15239016    493 VKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 60-151 6.02e-45

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 154.18  E-value: 6.02e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  60 DTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPP 139
Cdd:COG0545  12 AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVIPP 91

                        90
                ....*....|..
gi 15239016 140 NATLQFDVELIA 151
Cdd:COG0545  92 NSTLVFEVELLD 103
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
61-150 7.53e-43

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 148.50  E-value: 7.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016    61 TPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGS-PPTIPP 139
Cdd:pfam00254   4 KAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 15239016   140 NATLQFDVELI 150
Cdd:pfam00254  84 NATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
292-390 4.48e-26

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 101.89  E-value: 4.48e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   292 GYERPNEGAIVKLKLIGKLQDGTtVFVkkGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESK 371
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGT-VFD--SSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA 77

                          90
                  ....*....|....*....
gi 15239016   372 QelAVIPPNSTVYYEVELV 390
Cdd:pfam00254  78 G--PVIPPNATLVFEVELL 94
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 45-150 6.58e-24

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 101.38  E-value: 6.58e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   45 KSGLKKKLVKEcEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQghVIKGWDLGIKTMKKGENAIFTIPP 124
Cdd:PRK10902 145 STGLLYKVEKE-GTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPP 221

                         90       100
                 ....*....|....*....|....*.
gi 15239016  125 ELAYGETGSpPTIPPNATLQFDVELI 150
Cdd:PRK10902 222 ELAYGKAGV-PGIPANSTLVFDVELL 246
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 285-392 2.85e-23

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 94.48  E-value: 2.85e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 285 KILKEGEGyERPNEGAIVKLKLIGKLQDGTtVFVKKghEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYA 364
Cdd:COG0545   4 KVLKEGTG-AKPKAGDTVTVHYTGTLLDGT-VFDSS--YDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79

                        90       100
                ....*....|....*....|....*...
gi 15239016 365 FGSSESKQelaVIPPNSTVYYEVELVSF 392
Cdd:COG0545  80 YGERGAGG---VIPPNSTLVFEVELLDV 104
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 39-150 2.09e-22

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 95.25  E-value: 2.09e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   39 EEMEIGKSGLKKKLVKECEKwDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQghVIKGWDLGIKTMKKGENA 118
Cdd:PRK11570  95 EGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGWIEALTLMPVGSKW 171

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239016  119 IFTIPPELAYGETGSPPTIPPNATLQFDVELI 150
Cdd:PRK11570 172 ELTIPHELAYGERGAGASIPPFSTLVFEVELL 203
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
174-268 1.09e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 89.56  E-value: 1.09e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   174 KWEKPKDLDEVYVKYEARLEDGTIVGKSDG----VEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPasd 249
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDrgkpFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLA--- 77

                          90
                  ....*....|....*....
gi 15239016   250 glQAAIPPNATLQIDLELV 268
Cdd:pfam00254  78 --GPVIPPNATLVFEVELL 94
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 63-130 6.17e-16

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 74.75  E-value: 6.17e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15239016  63 ENGDEVEVHYTGTLLDGTKFDSSRDRGtPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE 130
Cdd:COG1047   2 EKGDVVTLHYTLKLEDGEVFDSTFEGE-PLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGE 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-526 1.33e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.03  E-value: 1.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALE-------------LDPDDAEALYNL--GLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                        90       100       110
                ....*....|....*....|....*....|
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:COG0457  80 NNLGLALQALGRYEEALEDYDKALELDPDD 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-545 2.36e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 2.36e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE-------------LDPDDAEALNNL--GLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 417-526 4.84e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 4.84e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALE-------------LDPDEPEARLNL--GLALLKAGDYDEALALLEKALKLDPEHPEAY 109

                        90       100       110
                ....*....|....*....|....*....|
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:COG4783 110 LRLARAYRALGRPDEAIAALEKALELDPDD 139
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 297-366 3.00e-10

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 58.57  E-value: 3.00e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15239016 297 NEGAIVKLKLIGKLQDGTTVfvkkghE--EDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFG 366
Cdd:COG1047   2 EKGDVVTLHYTLKLEDGEVF------DstFEGEPLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYG 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 417-545 7.22e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 7.22e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG2956  83 AQDYLKAGLLDRAEELLEKLLE-------------LDPDDAEALRLL--AEIYEQEGDWEKAIEVLERLLKLGPENAHAY 147

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 466-545 1.75e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 1.75e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 466 AACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG4783  11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
419-525 3.05e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.41  E-value: 3.05e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 419 VLFKAGKYARASKRYERGVKyieydstfdeeekKKSKDLKIACNLndAACKLKLKDYKEAAKLsTKVLEMDSRNVKAMYR 498
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALE-------------LDPDNADALNNL--GLLLLEQGRYDEAIAL-EKALKLDPNNAEALLN 64

                        90       100
                ....*....|....*....|....*..
gi 15239016 499 RAHAYLETADLDLAELDIKKALEIDPD 525
Cdd:COG3063  65 LAELLLELGDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 404-524 5.35e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 5.35e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 404 QERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYieydstfdeeekkKSKDLKIACNLndAACKLKLKDYKEAAKLST 483
Cdd:COG5010  48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------------DPNNPELYYNL--ALLYSRSGDKDEAKEYYE 112

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 15239016 484 KVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDP 524
Cdd:COG5010 113 KALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 470-529 8.39e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 8.39e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 470 LKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV 529
Cdd:COG4235  28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 467-545 1.40e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.20  E-value: 1.40e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15239016 467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
415-528 1.49e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 1.49e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 415 EEGNVLFKAGKYARASKRYERgvkYIEYDSTFDEeekkkskdlkIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVK 494
Cdd:COG4785  78 ERGVAYDSLGDYDLAIADFDQ---ALELDPDLAE----------AYNNR--GLAYLLLGDYDAALEDFDRALELDPDYAY 142

                        90       100       110
                ....*....|....*....|....*....|....
gi 15239016 495 AMYRRAHAYLETADLDLAELDIKKALEIDPDNKE 528
Cdd:COG4785 143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
466-529 4.14e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 4.14e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15239016 466 AACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV 529
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 417-528 6.14e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 6.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKYieydstfdeeekkKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRL-------------DPDNADALLDL--AEALLAAGDTEEAEELLERALALDPDNPEAL 88

                        90       100       110
                ....*....|....*....|....*....|..
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDNKE 528
Cdd:COG4235  89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 419-550 1.55e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.55e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 419 VLFKAGKYARASKRYERGVKYieydstFDEEEKKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYR 498
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEAL------LEKALELDPDNPEAFALL--GEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 15239016 499 RAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKF 550
Cdd:COG4783  78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
PRK15095 PRK15095
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 63-137 1.93e-07

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 237908 [Multi-domain]  Cd Length: 156  Bit Score: 50.86  E-value: 1.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15239016   63 ENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETgSPPTI 137
Cdd:PRK15095   6 QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP-SPDLI 79
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
470-545 1.96e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 1.96e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15239016 470 LKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAeLDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG3063   3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDE 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
426-526 5.74e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.68  E-value: 5.74e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 426 YARASKRYERGVKYIEYDSTFDEEEKKKS--KDLKIACNLND-AACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHA 502
Cdd:COG4785  37 LAIALADLALALAAAALAAAALAAERIDRalALPDLAQLYYErGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLA 116

                        90       100
                ....*....|....*....|....
gi 15239016 503 YLETADLDLAELDIKKALEIDPDN 526
Cdd:COG4785 117 YLLLGDYDAALEDFDRALELDPDY 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 427-545 6.51e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 6.51e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 427 ARASKRYERGVKYI---EYD---STFDEEEKKKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRA 500
Cdd:COG2956   6 AAALGWYFKGLNYLlngQPDkaiDLLEEALELDPETVEAHLAL--GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 15239016 501 HAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNK 545
Cdd:COG2956  84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 417-526 9.50e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 9.50e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKYieydstfdeeekkKSKDLKIACNLNDAAckLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALAL-------------NPDFAEAYLNLGEAL--RRLGRLEEAIAALRRALELDPDNAEAL 183

                        90       100       110
                ....*....|....*....|....*....|
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:COG3914 184 NNLGNALQDLGRLEEAIAAYRRALELDPDN 213
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-557 1.71e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 1.71e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 372 QELAVIPPNSTVYYEVELVSFIKEKEsWD--MNTQERIEAAGKKKEE-----GNVLFKAGKYARASKRYERGVKYieyds 444
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGD-WEkaIEVLERLLKLGPENAHaycelAELYLEQGDYDEAIEALEKALKL----- 173

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 445 tfdeeekkKSKDLKIACNLNDAAckLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDP 524
Cdd:COG2956 174 --------DPDCARALLLLAELY--LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243

                       170       180       190
                ....*....|....*....|....*....|...
gi 15239016 525 DNkEVKIEYKKLKEKVKEYnKKDAKFYSNMLSK 557
Cdd:COG2956 244 SD-DLLLALADLLERKEGL-EAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
417-521 1.91e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.91e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 417 GNVLFKAGKYARASKRYERGVKYieydstfdeeekkKSKDLKIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAM 496
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALEL-------------DPDDAEALYNL--GLALLELGRYDEAIEAYERALELDPDDADAL 147

                        90       100
                ....*....|....*....|....*
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALE 521
Cdd:COG0457 148 YNLGIALEKLGRYEEALELLEKLEA 172
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 378-541 2.16e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.75  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   378 PPNSTVYYEVELVSfIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEydstfdeeekkkskDL 457
Cdd:TIGR00990  96 PKNAPVEPADELPE-IDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP--------------DP 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   458 KIACNLndAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV-------- 529
Cdd:TIGR00990 161 VYYSNR--AACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQsaqaverl 238

                         170
                  ....*....|....
gi 15239016   530 --KIEYKKLKEKVK 541
Cdd:TIGR00990 239 lkKFAESKAKEILE 252
TPR_19 pfam14559
Tetratricopeptide repeat;
473-530 3.04e-06

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 44.88  E-value: 3.04e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15239016   473 KDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVK 530
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 404-529 4.45e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 4.45e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 404 QERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYieydstfdeeekkKSKDLKIACNLNDAAckLKLKDYKEAAKLST 483
Cdd:COG3914  72 AALLLLAALLELAALLLQALGRYEEALALYRRALAL-------------NPDNAEALFNLGNLL--LALGRLEEALAALR 136

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 15239016 484 KVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV 529
Cdd:COG3914 137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 477-533 6.87e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 6.87e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239016 477 EAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEY 533
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 176-271 2.74e-05

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 45.91  E-value: 2.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  176 EKPKDLDEVYVKYEARLEDGTIVGKS--DGVEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPasdglqa 253
Cdd:PRK10902 159 EAPKDSDTVVVNYKGTLIDGKEFDNSytRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP------- 231

                         90
                 ....*....|....*...
gi 15239016  254 AIPPNATLQIDLELVSWK 271
Cdd:PRK10902 232 GIPANSTLVFDVELLDVK 249
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 182-242 4.14e-05

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 43.55  E-value: 4.14e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15239016 182 DEVYVKYEARLEDGTIVGKSDG---VEFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGE 242
Cdd:COG1047   5 DVVTLHYTLKLEDGEVFDSTFEgepLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGE 68
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 285-393 9.53e-05

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 43.63  E-value: 9.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  285 KILKEGEGyERPNEGAIVKLKLIGKLQDGTtVF---VKKGheedeEPFEFKIDeeQVIEGLEKAVMGMKKGEVALITISP 361
Cdd:PRK11570 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGT-VFdssVARG-----EPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPH 177

                         90       100       110
                 ....*....|....*....|....*....|..
gi 15239016  362 EYAFGSSESKqelAVIPPNSTVYYEVELVSFI 393
Cdd:PRK11570 178 ELAYGERGAG---ASIPPFSTLVFEVELLEIL 206
TPR_1 pfam00515
Tetratricopeptide repeat;
493-526 1.15e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.15e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15239016   493 VKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 474-530 1.21e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.16  E-value: 1.21e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15239016 474 DYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVK 530
Cdd:cd24142  15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 493-526 2.59e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 2.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 15239016    493 VKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 285-414 3.98e-04

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 42.44  E-value: 3.98e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016  285 KILKEGEGyERPNEGAIVKLKLIGKLQDGTtVF---VKKGheedeEPFEFKIDeeQVIEGLEKAVMGMKKGEVALITISP 361
Cdd:PRK10902 151 KVEKEGTG-EAPKDSDTVVVNYKGTLIDGK-EFdnsYTRG-----EPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPP 221

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15239016  362 EYAFGssesKQELAVIPPNSTVYYEVELVSfIKEKESWDMNTQERIEAAGKKK 414
Cdd:PRK10902 222 ELAYG----KAGVPGIPANSTLVFDVELLD-VKPAPKADAKPEADAKAADSAK 269
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 470-531 4.27e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 4.27e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15239016   470 LKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKI 531
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 420-538 1.11e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 1.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 420 LFKAGKYARASKRYERGVKyieydstfdeeeKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVK---AM 496
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLK------------RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdAL 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 15239016 497 YRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKE 538
Cdd:COG1729  71 LKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLAR 112
TPR_8 pfam13181
Tetratricopeptide repeat;
493-525 1.82e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.22  E-value: 1.82e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15239016   493 VKAMYRRAHAYLETADLDLAELDIKKALEIDPD 525
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 470-526 2.86e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 2.86e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016   470 LKLKDYKEAAKLSTKVLEMDSR---NVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526
Cdd:pfam13432   8 LRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
423-529 3.06e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 3.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15239016 423 AGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLkiacnlndAACKLKLKDYKEAAKLStkvlemdsRNVKAMYRRAHA 502
Cdd:COG4785  19 ASKAAILLAALLFAAVLALAIALADLALALAAAAL--------AAAALAAERIDRALALP--------DLAQLYYERGVA 82

                        90       100
                ....*....|....*....|....*..
gi 15239016 503 YLETADLDLAELDIKKALEIDPDNKEV 529
Cdd:COG4785  83 YDSLGDYDLAIADFDQALELDPDLAEA 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
486-529 3.60e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 3.60e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 15239016 486 LEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEV 529
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA 44
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 493-525 9.92e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.04  E-value: 9.92e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15239016   493 VKAMYRRAHAYLETADLDLAELDIKKALEIDPD 525
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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