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Conserved domains on  [gi|15237263|ref|NP_200090|]
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transmembrane protein, putative (DUF3464) [Arabidopsis thaliana]

Protein Classification

PAM68 family protein( domain architecture ID 10571573)

PAM68 family protein is a DUF3464 domain-containing protein; similar to Arabidopsis thaliana chloroplastic protein PAM68 (PHOTOSYNTHESIS AFFECTED MUTANT 68), which is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 74-166 1.41e-30

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


:

Pssm-ID: 432211  Cd Length: 150  Bit Score: 108.15  E-value: 1.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237263    74 QEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGL 153
Cdd:pfam11947  53 EVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGW 132

                          90
                  ....*....|....*.
gi 15237263   154 KEAKENWVEM---WKE 166
Cdd:pfam11947 133 EEFKTNWGRMieaWRS 148
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 74-166 1.41e-30

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 108.15  E-value: 1.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237263    74 QEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGL 153
Cdd:pfam11947  53 EVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGW 132

                          90
                  ....*....|....*.
gi 15237263   154 KEAKENWVEM---WKE 166
Cdd:pfam11947 133 EEFKTNWGRMieaWRS 148
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 74-166 1.41e-30

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 108.15  E-value: 1.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15237263    74 QEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGL 153
Cdd:pfam11947  53 EVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLLGW 132

                          90
                  ....*....|....*.
gi 15237263   154 KEAKENWVEM---WKE 166
Cdd:pfam11947 133 EEFKTNWGRMieaWRS 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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