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Conserved domains on  [gi|15607399|ref|NP_214772|]
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hypothetical protein Rv0258c [Mycobacterium tuberculosis H37Rv]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TetR_C_16 pfam17920
Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the ...
39-144 3.09e-25

Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.


:

Pssm-ID: 465568  Cd Length: 107  Bit Score: 92.62  E-value: 3.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15607399    39 QVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYG 118
Cdd:pfam17920   2 ELGERLVRAVLEVWDPEGGGPLLALLRSAASDPEAAELLREFLAEQVLAPLAARLGGPDAELRAALVASQLLGLALARYV 81
                          90       100
                  ....*....|....*....|....*.
gi 15607399   119 VRSEPLHSMSVEMLVDAIGPTMQRYL 144
Cdd:pfam17920  82 LRLEPLASAPPEELVALVGPTLQRYL 107
 
Name Accession Description Interval E-value
TetR_C_16 pfam17920
Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the ...
39-144 3.09e-25

Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.


Pssm-ID: 465568  Cd Length: 107  Bit Score: 92.62  E-value: 3.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15607399    39 QVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYG 118
Cdd:pfam17920   2 ELGERLVRAVLEVWDPEGGGPLLALLRSAASDPEAAELLREFLAEQVLAPLAARLGGPDAELRAALVASQLLGLALARYV 81
                          90       100
                  ....*....|....*....|....*.
gi 15607399   119 VRSEPLHSMSVEMLVDAIGPTMQRYL 144
Cdd:pfam17920  82 LRLEPLASAPPEELVALVGPTLQRYL 107
 
Name Accession Description Interval E-value
TetR_C_16 pfam17920
Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the ...
39-144 3.09e-25

Tetracyclin repressor-like, C-terminal domain; TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.


Pssm-ID: 465568  Cd Length: 107  Bit Score: 92.62  E-value: 3.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15607399    39 QVGRRTLYVLITTWDAAGGGPFAASAIATTGLAKTAEIVQSMFIGPVFNPLLKMLGADKIAIRASLCAAQLVGLGIMRYG 118
Cdd:pfam17920   2 ELGERLVRAVLEVWDPEGGGPLLALLRSAASDPEAAELLREFLAEQVLAPLAARLGGPDAELRAALVASQLLGLALARYV 81
                          90       100
                  ....*....|....*....|....*.
gi 15607399   119 VRSEPLHSMSVEMLVDAIGPTMQRYL 144
Cdd:pfam17920  82 LRLEPLASAPPEELVALVGPTLQRYL 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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