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Conserved domains on  [gi|15595298|ref|NP_248790|]
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hypothetical protein PA0100 [Pseudomonas aeruginosa PAO1]

Protein Classification

beta propeller repeat protein( domain architecture ID 1904868)

WD40/YVTN/BNR-like beta propeller repeat protein similar to plant photosynthesis system II assembly factor Ycf48, and some sialidases (family 33 glycoside hydrolases) such as non-viral exo-alpha-sialidases that catalyze the removal of sialic acid (N-acetylneuraminic acid) moieties from glycoproteins, oligosaccharides and gangliosides

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4447 super family cl44073
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 169-302 2.59e-05

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


The actual alignment was detected with superfamily member COG4447:

Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 43.45  E-value: 2.59e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595298 169 IYAVGWDGEIWQYD--GKRWQPRESPTN-LILTAICCAEDGSVYACGQAGTLLRGRN--DHWEIIAQDDVDEDLWSLAWF 243
Cdd:COG4447   6 LWAVGASGGILRSTdgGKTWTPLSDGLPgLSLRAVAFSDPNTVWVGTGPGGIYRSTDggKTWTEVNSGPDNPRLFAIAFS 85

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595298 244 D--------GALYVS-----SATAVYTLVGGHLKEVDFGDeqPQRCFHLSAADGVLWSIAAKDIFSFD-GQQW 302
Cdd:COG4447  86 DpntgyaavGGIYRTtdggkTWTKVSSGLPVDLNDVAFLD--PGTLYAAGEGGLIYRSTDGGEYRSTDgGKTW 156
 
Name Accession Description Interval E-value
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 169-302 2.59e-05

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 43.45  E-value: 2.59e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595298 169 IYAVGWDGEIWQYD--GKRWQPRESPTN-LILTAICCAEDGSVYACGQAGTLLRGRN--DHWEIIAQDDVDEDLWSLAWF 243
Cdd:COG4447   6 LWAVGASGGILRSTdgGKTWTPLSDGLPgLSLRAVAFSDPNTVWVGTGPGGIYRSTDggKTWTEVNSGPDNPRLFAIAFS 85

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595298 244 D--------GALYVS-----SATAVYTLVGGHLKEVDFGDeqPQRCFHLSAADGVLWSIAAKDIFSFD-GQQW 302
Cdd:COG4447  86 DpntgyaavGGIYRTtdggkTWTKVSSGLPVDLNDVAFLD--PGTLYAAGEGGLIYRSTDGGEYRSTDgGKTW 156
 
Name Accession Description Interval E-value
COG4447 COG4447
Uncharacterized conserved protein related to plant photosystem II stability/assembly factor ...
 169-302 2.59e-05

Uncharacterized conserved protein related to plant photosystem II stability/assembly factor [General function prediction only];


Pssm-ID: 443546 [Multi-domain]  Cd Length: 156  Bit Score: 43.45  E-value: 2.59e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595298 169 IYAVGWDGEIWQYD--GKRWQPRESPTN-LILTAICCAEDGSVYACGQAGTLLRGRN--DHWEIIAQDDVDEDLWSLAWF 243
Cdd:COG4447   6 LWAVGASGGILRSTdgGKTWTPLSDGLPgLSLRAVAFSDPNTVWVGTGPGGIYRSTDggKTWTEVNSGPDNPRLFAIAFS 85

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595298 244 D--------GALYVS-----SATAVYTLVGGHLKEVDFGDeqPQRCFHLSAADGVLWSIAAKDIFSFD-GQQW 302
Cdd:COG4447  86 DpntgyaavGGIYRTtdggkTWTKVSSGLPVDLNDVAFLD--PGTLYAAGEGGLIYRSTDGGEYRSTDgGKTW 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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