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Conserved domains on  [gi|15595401|ref|NP_248895|]
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ABC transporter permease [Pseudomonas aeruginosa PAO1]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 16-269 2.73e-80

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 242.71  E-value: 2.73e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  16 FPGFGAFSLLFYLYLYAPILVLVVYSFNANQSAT-VWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAA 94
Cdd:COG1177   6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  95 LGTSRGaKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQA 174
Cdd:COG1177  86 LALARY-RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEA 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 175 AADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVS 254
Cdd:COG1177 165 ARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLS 244

                       250
                ....*....|....*
gi 15595401 255 VIFVSLSYLLGKPRA 269
Cdd:COG1177 245 LLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 16-269 2.73e-80

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 242.71  E-value: 2.73e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  16 FPGFGAFSLLFYLYLYAPILVLVVYSFNANQSAT-VWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAA 94
Cdd:COG1177   6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  95 LGTSRGaKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQA 174
Cdd:COG1177  86 LALARY-RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEA 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 175 AADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVS 254
Cdd:COG1177 165 ARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLS 244

                       250
                ....*....|....*
gi 15595401 255 VIFVSLSYLLGKPRA 269
Cdd:COG1177 245 LLLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 20-269 1.65e-63

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 199.83  E-value: 1.65e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   20 GAFSLLFYLYLYAPILVLVVYSFNANQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSR 99
Cdd:PRK09500   7 GGFMTLVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  100 gAKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLY 179
Cdd:PRK09500  87 -YRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  180 AGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIFVS 259
Cdd:PRK09500 166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245

                        250
                 ....*....|
gi 15595401  260 LSYLLGKPRA 269
Cdd:PRK09500 246 LSQLLARDKT 255
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 102-266 4.33e-21

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 88.07  E-value: 4.33e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALF----------STVGLSLGYG--NLIIAHTVFCIPFAYLPIRARLDDMDL 169
Cdd:TIGR02141  29 RFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFgpngpigkllELFGISLVFTftGAVLASVIVSFPLMVQPIRAAFEAVDP 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   170 SLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVS---QAGTTTLPIFIFGLLRMGVTPdVNAV 246
Cdd:TIGR02141 109 DLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAgniPGETQTIPLAIYDAVESDYEL-AHQL 187

                         170       180
                  ....*....|....*....|
gi 15595401   247 STLILGVSVIFVSLSYLLGK 266
Cdd:TIGR02141 188 SLVLLAISLIVLLLVELLNK 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 102-258 7.06e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.90  E-value: 7.06e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNL----IIAHTVFCIPFAYLPIRARLDDMDLSLEQAAAD 177
Cdd:cd06261  30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILALLLIAPFARLIRRAALESIPKDLVEAARA 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 178 LYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIF 257
Cdd:cd06261 110 LGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189


                .
gi 15595401 258 V 258
Cdd:cd06261 190 L 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 107-263 3.63e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   107 RLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLYAGPWRTL 186
Cdd:pfam00528  18 RLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIF 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   187 RKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMV---SQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIFVSLSYL 263
Cdd:pfam00528  98 RKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 16-269 2.73e-80

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 242.71  E-value: 2.73e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  16 FPGFGAFSLLFYLYLYAPILVLVVYSFNANQSAT-VWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAA 94
Cdd:COG1177   6 RLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAA 85

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  95 LGTSRGaKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQA 174
Cdd:COG1177  86 LALARY-RFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEA 164

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 175 AADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVS 254
Cdd:COG1177 165 ARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLS 244

                       250
                ....*....|....*
gi 15595401 255 VIFVSLSYLLGKPRA 269
Cdd:COG1177 245 LLLLLLAERLRRRGE 259
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 20-269 1.65e-63

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 199.83  E-value: 1.65e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   20 GAFSLLFYLYLYAPILVLVVYSFNANQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSR 99
Cdd:PRK09500   7 GGFMTLVYAYLYIPIIILIVNSFNSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  100 gAKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLY 179
Cdd:PRK09500  87 -YRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  180 AGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIFVS 259
Cdd:PRK09500 166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245

                        250
                 ....*....|
gi 15595401  260 LSYLLGKPRA 269
Cdd:PRK09500 246 LSQLLARDKT 255
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 27-253 1.79e-47

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 159.25  E-value: 1.79e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   27 YLYLYAPILVLVVYSFNANQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSRGAKFRGL 106
Cdd:PRK10592  20 FTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFGRFRGS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  107 RLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGY----GNLII--AHTVFCIPFAYLPIRARLDDMDLSLEQAAADLYA 180
Cdd:PRK10592 100 NGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWpadrGMLTIwlAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGA 179

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595401  181 GPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGV 253
Cdd:PRK10592 180 TPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGV 252
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
17-268 1.73e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 124.50  E-value: 1.73e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  17 PGFGAFSLLFYLYLYAPILVLVVYSFNANQSAtvwtGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALG 96
Cdd:COG1178 289 LALALCLLLVLLGLLLPLLALLLWSLTKALDD----NLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYL 364

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  97 TSRGaKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGN---LIIAHTVFCIPFAYLPIRARLDDMDLSLEQ 173
Cdd:COG1178 365 VRRR-RGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTlaiLVLAYVVRFLPFALRSLEAALAQIDPSLEE 443

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 174 AAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGV 253
Cdd:COG1178 444 AARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLV 523

                       250
                ....*....|....*
gi 15595401 254 SVIFVSLSYLLGKPR 268
Cdd:COG1178 524 SLLPVLLLERLLGRR 538
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 102-269 8.07e-24

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 95.89  E-value: 8.07e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFS-----------TVGLSLG---YGnLIIAHTVFCIPFAYLPIRARLDDM 167
Cdd:COG4149  38 RFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGrngplgqlleeLFGISLVftwTG-AVLASVVVSLPLMVQPLRAAFEAV 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 168 DLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVsqAG-----TTTLPIFIFGLLRMGVTPD 242
Cdd:COG4149 117 DPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEFGATLMF--AGnipgkTQTLPLAIYDAVEAGDYAA 194

                       170       180
                ....*....|....*....|....*..
gi 15595401 243 VNAVSTLILGVSVIFVSLSYLLGKPRA 269
Cdd:COG4149 195 AHALSLILLAISFVVLLLLNLLNRRRR 221
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 21-269 1.65e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 90.98  E-value: 1.65e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  21 AFSLLFYLYlyaPILVLVVYSF-NANQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSR 99
Cdd:COG1176  20 LWLLLFFVL---PLLLLLVYSFtTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLAR 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 100 gAKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGL------SLG-----------YGNLIIAHTVFCIPFAYLPIRA 162
Cdd:COG1176  97 -APPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLlnslllALGlideplrllytEFAVVIGLVYVYLPFMVLPLYA 175

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 163 RLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFglLRMGVTPD 242
Cdd:COG1176 176 ALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIY--QQFLSALN 253

                       250       260       270
                ....*....|....*....|....*....|
gi 15595401 243 VN---AVSTLILGVSVIFVSLSYLLGKPRA 269
Cdd:COG1176 254 WPlaaALAVVLLLIVLLVLLLYLRLLRRRR 283
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
15-269 1.73e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 93.30  E-value: 1.73e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  15 DFPGFGAFSLLFYLYLYAPILVLVVYSFNANqsatvwtgfsLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAA 94
Cdd:COG1178   9 PRLLLLLLALLLALLVLLPLLALLLRAFTDG----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLA 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  95 LGTSRgAKFRGLRLSMGAIMLPLVLPEIVVGVATLALF-----------STVGLSL----GYGNLIIAHTVFCIPFAYLP 159
Cdd:COG1178  79 WLLAR-TDFPGRRLLRWLLLLPLALPPYVVALAWIALFgpngllntllrALFGLEPpdiyGLGGIILVLVLFNYPYVYLL 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 160 IRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVsQAGTTTLPIFIFGLLR-MG 238
Cdd:COG1178 158 LRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-GGGYTTLTTAIYQAWLgDF 236

                       250       260       270
                ....*....|....*....|....*....|.
gi 15595401 239 VTPDVNAVSTLILGVSVIFVSLSYLLGKPRA 269
Cdd:COG1178 237 DLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 102-266 4.33e-21

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 88.07  E-value: 4.33e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALF----------STVGLSLGYG--NLIIAHTVFCIPFAYLPIRARLDDMDL 169
Cdd:TIGR02141  29 RFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFgpngpigkllELFGISLVFTftGAVLASVIVSFPLMVQPIRAAFEAVDP 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   170 SLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVS---QAGTTTLPIFIFGLLRMGVTPdVNAV 246
Cdd:TIGR02141 109 DLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAgniPGETQTIPLAIYDAVESDYEL-AHQL 187

                         170       180
                  ....*....|....*....|
gi 15595401   247 STLILGVSVIFVSLSYLLGK 266
Cdd:TIGR02141 188 SLVLLAISLIVLLLVELLNK 207
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 103-266 2.95e-19

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 84.42  E-value: 2.95e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 103 FRGLRLSMGAIMLPLVLPEIVVGVATLALFST----------VGLSLGYGNL--IIAHTVFCIPFAYLPIRARLDDMDLS 170
Cdd:COG0555  86 FPGKRLVDALVDLPFALPTAVAGIALLLLFGPngwlgqllapLGIKVAFTPLgiVLAQTFVSLPFVVRTVQPVLEELDPE 165

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 171 LEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVS---QAGTTTLPIFIFGLLRMGVTPDVNAVS 247
Cdd:COG0555 166 LEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAgnlPMKTEILPLLIYLKLEEGDYAGATAIA 245

                       170
                ....*....|....*....
gi 15595401 248 TLILGVSVIFVSLSYLLGK 266
Cdd:COG0555 246 LVLLLISFLLLLLINLLQR 264
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 101-253 1.02e-16

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 76.67  E-value: 1.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   101 AKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGY------------GNLIIAHTVFCIPFAYLPIRARLDDMD 168
Cdd:TIGR01581  51 VRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYleaagiqvifstLGVVLAQTFVASPYYVRVARSTFKSVD 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   169 LSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMV---SQAGTTTLPIFIFGLLRMGVTPDVNA 245
Cdd:TIGR01581 131 PRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALGEFGATLMFagsIQGKTRTLPLAIYLNIQSDNIEAAVA 210


                  ....*...
gi 15595401   246 VSTLILGV 253
Cdd:TIGR01581 211 SALLLLVI 218
modB PRK09421
molybdate ABC transporter permease subunit;
102-264 1.27e-15

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 73.80  E-value: 1.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALF-----------STVGLSLGYG--NLIIAHTVFCIPFAYLPIRARLDDMD 168
Cdd:PRK09421  40 RFPGKSLLDSLLHLPLVLPPVVTGYLLLISMgrrgfigqwlyEWFGISFAFSwrGAALAAAVMAFPLMVRAIRLSLEAVD 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  169 LSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNF--VISMMVSQAGTT-TLPIFIFGLLRmgvTPDVNA 245
Cdd:PRK09421 120 RKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFgaTITFVSNIPGETqTIPSAMYTLIQ---TPGGES 196

                        170
                 ....*....|....*....
gi 15595401  246 VSTLILGVSVIfVSLSYLL 264
Cdd:PRK09421 197 AAARLCIISIA-IALASLL 214
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 3-258 1.20e-14

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 72.05  E-value: 1.20e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   3 ARLWKGSRHNVQDFPGFGAFSLLFYLYLYaPILVLVVYSFNANQSATVW------TGFSLDWYRAAFANQALRQAAGNSL 76
Cdd:COG0395   2 SATARRRRRRLGRILLYLLLILLALLFLF-PLYWMVVTSFKPPAEIFSGppsllpSEFTLENYRAAFTDGPFGRYLLNSL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  77 LIAVCASAAATAIATLAALGTSRGaKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFA 156
Cdd:COG0395  81 IVAVVSTVLSLLLSSLAAYALARF-RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFG 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 157 YLPIRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMV-SQAGTTTLPIFIFGLL 235
Cdd:COG0395 160 IFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILlTSPDLRTLPVGLASFQ 239

                       250       260
                ....*....|....*....|....*
gi 15595401 236 RMGVTPD--VNAVSTLILGVSVIFV 258
Cdd:COG0395 240 GQYGTDWglLMAAAVIATLPVLILF 264
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
24-268 3.53e-13

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 67.85  E-value: 3.53e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  24 LLFYLYLYAPILVLVVYSF---NANQSATVWTGFslDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSRg 100
Cdd:COG1175  29 LLLLVFVLYPLLYTLYLSFtdwNLLGPPPEFVGL--DNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR- 105

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 101 aKFRGLRLSMGAIMLPLVLPEIVVGVATLALFS-TVGL------SLGYGN-------------LIIAHTVFCIPFAYLPI 160
Cdd:COG1175 106 -KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNpDYGLlnallgALGLEPinwlgdpslalpaVIIVTVWKGTGFNMLIF 184

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 161 RARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAG----TTTLPIFI----F 232
Cdd:COG1175 185 LAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGpgnsTTTLVLYIyqtaF 264

                       250       260       270
                ....*....|....*....|....*....|....*.
gi 15595401 233 GLLRMGVTpdvNAVSTLILGVSVIFVSLSYLLGKPR 268
Cdd:COG1175 265 QQFDFGYA---SAIAVVLFLIILVLTLLQLRLLRRR 297
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 17-210 2.53e-12

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 66.43  E-value: 2.53e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  17 PGFGAFSLLFYLYLyAPILVLVVYSFnanqsATVW-------TGFSLD-WYRAAFAnqaLRQAAGNSLLIAVCASAAATA 88
Cdd:COG4135 304 LGLALMLLIALLSL-LGLALLLLWSF-----AGRWrfpdalpSSWTLRfWQRAAPG---LLEPLGNTLLLALASALIALV 374

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  89 IATLAALGTSRGAKFRGlRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMD 168
Cdd:COG4135 375 LVLACLEAEARRGRRPG-RRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALD 453

                       170       180       190       200
                ....*....|....*....|....*....|....*....|..
gi 15595401 169 LSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSL 210
Cdd:COG4135 454 PRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSV 495
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 102-264 5.55e-11

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 61.21  E-value: 5.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIP-------FAYLPIRAR-----LDDMDL 169
Cdd:TIGR00969  91 QFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASFGIQIIFTWPgmalamiFVSLPFVVRevqpvLEELGT 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   170 SLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQ--AGTT-TLPIFIFGLLRMGVTPDVNAV 246
Cdd:TIGR00969 171 EAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVSGniPGKTlTLPLLIEERLEQYDYPGAYVI 250

                         170
                  ....*....|....*...
gi 15595401   247 STLILGVSVIFVSLSYLL 264
Cdd:TIGR00969 251 AAVLLLVSLVTLFLINAL 268
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 20-213 4.92e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 59.31  E-value: 4.92e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401    20 GAFSLLFYLYLYAPILVLVVYSFNanQSATVWTGfsLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSR 99
Cdd:TIGR03262   8 AGMILALLLFLLLPLLALLTKSVY--DSDGDFIG--LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   100 gAKFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLS---LGYGNL------IIAHTVFCIPFAYLPIRARLDDMDLS 170
Cdd:TIGR03262  84 -SRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLkglLGGFSIygfwgiVIGEVFYTFPHALMILVTALSLADGR 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 15595401   171 LEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNF 213
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDF 205
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
102-256 5.14e-10

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 58.61  E-value: 5.14e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVG------------LSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDL 169
Cdd:PRK10971  89 RFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGwygewlakfdikVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGP 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  170 SLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVS-----QAGTTTLPIFIfgLLRMGVTPDVN 244
Cdd:PRK10971 169 EYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAgniawKTEVTSLMIFV--RLQEFDYPAAS 246

                        170
                 ....*....|..
gi 15595401  245 AVSTLILGVSVI 256
Cdd:PRK10971 247 AIASVILAASLL 258
cysT CHL00187
sulfate transport protein; Provisional
 101-220 5.80e-10

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 58.10  E-value: 5.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  101 AKFRGLRLSMGAIMLPLVLPEIVVGVaTLA-----------LFSTVGLSLGY--GNLIIAHTVFCIPFAYLPIRARLDDM 167
Cdd:CHL00187  85 YNFPGKRLLDAAVDLPFALPTSVAGL-TLAtvygdngwighLLSHLGIQIVFtkLGVLLAMIFVSFPFVVRTIQPVLQEI 163

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15595401  168 DLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVS 220
Cdd:CHL00187 164 EKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIIS 216
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 102-258 7.06e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.90  E-value: 7.06e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNL----IIAHTVFCIPFAYLPIRARLDDMDLSLEQAAAD 177
Cdd:cd06261  30 RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILALLLIAPFARLIRRAALESIPKDLVEAARA 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401 178 LYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIF 257
Cdd:cd06261 110 LGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189


                .
gi 15595401 258 V 258
Cdd:cd06261 190 L 190
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 27-232 9.17e-10

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 58.09  E-value: 9.17e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   27 YLYLYAPILVL---VVYSFN--ANQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIatlaalGTSRGA 101
Cdd:PRK15050  25 LLWLLLPLLVLaplVVYPLVrvVLQSLTGEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVL------GVLLAL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  102 -----KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLS------------------LGYGNLIIAHTVFCIPFAYL 158
Cdd:PRK15050  99 vlafvPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVnialqrlfgleappldflYSPGGVILAEITFYTPFVVR 178

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15595401  159 PIRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMVSQAGTTTLPIFIF 232
Cdd:PRK15050 179 PLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIY 252
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 144-215 1.34e-07

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 51.63  E-value: 1.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  144 LIIAHT--------VFC-IPFAYLPIRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFV 214
Cdd:PRK10683 178 LTILHTnlavyigiVYAyLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFV 257


                 .
gi 15595401  215 I 215
Cdd:PRK10683 258 I 258
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 48-235 7.47e-07

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 49.83  E-value: 7.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   48 ATVWTGFSLDWYRAAfANQALRQAAGNSLLIAVCASAAATAIATLAALgTSRGAKFRGLRLSMGAI----MLPLVLPEIV 123
Cdd:PRK09433 298 AVVVSGLNASLLRVL-AQPALWQALWTSLRIALAAALLAVVLTMMLLW-SSRELRLRQRKLAAQALelsgMLILAMPGIV 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  124 VGVAT-LALFSTVGL-SLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSG 201
Cdd:PRK09433 376 LATGLfLLLRNTTDLpASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQA 455

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 15595401  202 LMLAFIVSLDNF-VISMMVSQAGtTTLPIFIFGLL 235
Cdd:PRK09433 456 FAFACALSLGDFgVIALFGSQDF-RTLPFLLYQQL 489
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 144-216 9.76e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 45.83  E-value: 9.76e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15595401  144 LIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVIS 216
Cdd:PRK09497 153 VIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVS 225
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 107-263 3.63e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   107 RLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPIRARLDDMDLSLEQAAADLYAGPWRTL 186
Cdd:pfam00528  18 RLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIF 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   187 RKVTLPLLAPGIFSGLMLAFIVSLDNFVISMMV---SQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIFVSLSYL 263
Cdd:pfam00528  98 RKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 17-268 2.71e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 41.97  E-value: 2.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401    17 PGFGAFSLLFYLYLYAPILVLVVYSFNANqSATVW---TGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLA 93
Cdd:TIGR03262 277 RVRDAACLVYCAIISAALLAVVGMAVYAS-LVKFWpynLSLTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGTILVFGG 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401    94 ALGTSRGAKFRGLRLSMGAI-MLPLVLPEIVVGVATLALFSTVGLSLG--YGNLIIAHTVFCIPF---AYLPIRARLDDM 167
Cdd:TIGR03262 356 AYLIEKTRGFGLLRGVLRFLaILPMAVPGLVLGLGYIFFFNAPTNPLNglYGTMALLVLCTVVHFytvSHLTAVTALKQI 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   168 DLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNfvISMMVSQAGTTTLP--IFIFGLLRMGVTPDVNA 245
Cdd:TIGR03262 436 DSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTT--VSAVVFLYSPDTKLasVAILNMDDAGDIAPAAA 513

                         250       260
                  ....*....|....*....|...
gi 15595401   246 VSTLILgVSVIFVSLSYLLGKPR 268
Cdd:TIGR03262 514 MATLIV-LTSAVAKLLFALASRR 535
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 119-260 2.75e-04

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 41.45  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   119 LPEIVVGVATLALFstVGLSLGYGNLIIAHTVfCIPFAYLPIRAR-----LDDMDLSLEQAAADLYAGPWRTLRKVTLPL 193
Cdd:TIGR00974 104 VPSIVVGLFGYGFF--VLTYLGGGFSLLAGAL-ALALLILPVIIRtteeaLKAVPKDLREASLALGATKWQTIFKVVLPA 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401   194 LAPGIFSGLMLA------------FIVSLDNFVISMMVSQagTTTLPIFIFGLLRMGVTPDVNAVS---TLILGVSVIFV 258
Cdd:TIGR00974 181 ALPGILTGIILSiaraagetapllFTAGGSAFTPPNLFDP--FATLPVLIYNLASEGPYVEAQQLAwaaALVLIVLVLLL 258


                  ..
gi 15595401   259 SL 260
Cdd:TIGR00974 259 NL 260
malG PRK10998
maltose ABC transporter permease MalG;
102-229 3.31e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.15  E-value: 3.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595401  102 KFRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLiiaHTVFCIPFAYL--------PIRARLDDMDLSLEQ 173
Cdd:PRK10998 114 RFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGL---NTHGGVIFAYLggialhvwTIKGYFETIDSSLEE 190

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 15595401  174 AAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNF-VISMMVSQAGTTTLPI 229
Cdd:PRK10998 191 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVpVASLLLRDVNSYTLAV 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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