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Conserved domains on  [gi|15595915|ref|NP_249409|]
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hypothetical protein PA0718 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5447 super family cl38796
Family of unknown function (DUF5447); This is a family of unknown function found in ...
 7-96 1.41e-44

Family of unknown function (DUF5447); This is a family of unknown function found in Pseudomonas.


The actual alignment was detected with superfamily member pfam17525:

Pssm-ID: 340240  Cd Length: 92  Bit Score: 138.95  E-value: 1.41e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595915    7 YLRQTHAPDCACSVCWSARQVI-PLHSP-SPCPDCRPPGLPYLEGGRWLCRPRSFCAKHDPSRRPPKYWHVVYDSGKPTP 84
Cdd:pfam17525  1 YLRQPHAPDCDCSVCWSRREMAkPDHSPfTPCADCRPAGIPKAEGGRWLCEPASICAKHTPSERPPKYWHVVYDSGKPTP 80

                         90
                 ....*....|..
gi 15595915   85 FVPVREAFQLEG 96
Cdd:pfam17525 81 FVPIREPFELVG 92
 
Name Accession Description Interval E-value
DUF5447 pfam17525
Family of unknown function (DUF5447); This is a family of unknown function found in ...
 7-96 1.41e-44

Family of unknown function (DUF5447); This is a family of unknown function found in Pseudomonas.


Pssm-ID: 340240  Cd Length: 92  Bit Score: 138.95  E-value: 1.41e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595915    7 YLRQTHAPDCACSVCWSARQVI-PLHSP-SPCPDCRPPGLPYLEGGRWLCRPRSFCAKHDPSRRPPKYWHVVYDSGKPTP 84
Cdd:pfam17525  1 YLRQPHAPDCDCSVCWSRREMAkPDHSPfTPCADCRPAGIPKAEGGRWLCEPASICAKHTPSERPPKYWHVVYDSGKPTP 80

                         90
                 ....*....|..
gi 15595915   85 FVPVREAFQLEG 96
Cdd:pfam17525 81 FVPIREPFELVG 92
 
Name Accession Description Interval E-value
DUF5447 pfam17525
Family of unknown function (DUF5447); This is a family of unknown function found in ...
 7-96 1.41e-44

Family of unknown function (DUF5447); This is a family of unknown function found in Pseudomonas.


Pssm-ID: 340240  Cd Length: 92  Bit Score: 138.95  E-value: 1.41e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15595915    7 YLRQTHAPDCACSVCWSARQVI-PLHSP-SPCPDCRPPGLPYLEGGRWLCRPRSFCAKHDPSRRPPKYWHVVYDSGKPTP 84
Cdd:pfam17525  1 YLRQPHAPDCDCSVCWSRREMAkPDHSPfTPCADCRPAGIPKAEGGRWLCEPASICAKHTPSERPPKYWHVVYDSGKPTP 80

                         90
                 ....*....|..
gi 15595915   85 FVPVREAFQLEG 96
Cdd:pfam17525 81 FVPIREPFELVG 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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