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Conserved domains on  [gi|15596670|ref|NP_250164|]
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hypothetical protein PA1473 [Pseudomonas aeruginosa PAO1]

Protein Classification

EscU/YscU/HrcU family type III secretion system export apparatus switch protein( domain architecture ID 10006226)

EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to Bacillus subtilis uncharacterized protein YlqH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-93 1.18e-35

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 117.21  E-value: 1.18e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   1 MNRKQSPaPRQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIPEALYRTIAEI 78
Cdd:COG2257   1 MSKEKKK-RKKAVALKYDGEkdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                        90
                ....*....|....*
gi 15596670  79 IAFAWHLKGKCPEGF 93
Cdd:COG2257  80 LAFIYRLDGKAPEGK 94
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-93 1.18e-35

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 117.21  E-value: 1.18e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   1 MNRKQSPaPRQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIPEALYRTIAEI 78
Cdd:COG2257   1 MSKEKKK-RKKAVALKYDGEkdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                        90
                ....*....|....*
gi 15596670  79 IAFAWHLKGKCPEGF 93
Cdd:COG2257  80 LAFIYRLDGKAPEGK 94
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 12-81 3.09e-18

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 77.48  E-value: 3.09e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15596670    12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLL-ARLELGDAIPEALYRTIAEIIAF 81
Cdd:pfam01312 265 AVALKYDpgKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALyATVEVGQEIPEELYQAVAEVLAY 337
flhB PRK05702
flagellar type III secretion system protein FlhB;
12-92 3.40e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 74.81  E-value: 3.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIPEALYRTIAEIIAFAWHLKGK 88
Cdd:PRK05702 274 AVALKYDRGkmAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARaLYATVEIGQEIPEELYKAVAEVLAYVYQLKRW 353


                 ....
gi 15596670   89 CPEG 92
Cdd:PRK05702 354 RKGG 357
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 1-93 1.18e-35

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 117.21  E-value: 1.18e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   1 MNRKQSPaPRQAIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLARLELGDAIPEALYRTIAEI 78
Cdd:COG2257   1 MSKEKKK-RKKAVALKYDGEkdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEI 79

                        90
                ....*....|....*
gi 15596670  79 IAFAWHLKGKCPEGF 93
Cdd:COG2257  80 LAFIYRLDGKAPEGK 94
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
12-87 1.32e-19

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 81.31  E-value: 1.32e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15596670  12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIPEALYRTIAEIIAFAWHLKG 87
Cdd:COG1377 274 AVALKYDpgKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLARaLYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 12-81 3.09e-18

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 77.48  E-value: 3.09e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15596670    12 AIALSYD--GQAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLL-ARLELGDAIPEALYRTIAEIIAF 81
Cdd:pfam01312 265 AVALKYDpgKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALyATVEVGQEIPEELYQAVAEVLAY 337
flhB PRK05702
flagellar type III secretion system protein FlhB;
12-92 3.40e-17

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 74.81  E-value: 3.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIPEALYRTIAEIIAFAWHLKGK 88
Cdd:PRK05702 274 AVALKYDRGkmAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARaLYATVEIGQEIPEELYKAVAEVLAYVYQLKRW 353


                 ....
gi 15596670   89 CPEG 92
Cdd:PRK05702 354 RKGG 357
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
12-88 1.02e-14

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 68.17  E-value: 1.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   12 AIALSY-DGQA-APTLSAKGDAELAEAILAIARDYEVPIYENAELVRLL-ARLELGDAIPEALYRTIAEIIAFAWHLKGK 88
Cdd:PRK12772 530 AVALKYeEGKDeAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIyKKVEIDQEIPQDMYQAVAEILAIVYKLKKK 609
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 12-86 8.66e-09

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 51.57  E-value: 8.66e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15596670   12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVRLLAR-LELGDAIPEALYRTIAEIIAFAWHLK 86
Cdd:PRK12468 274 AVALQYNESkmSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRhSEVGQHIPATLYAAVAEVLAWVYQLK 351
PRK06298 PRK06298
type III secretion system protein; Validated
 12-92 1.87e-08

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 50.23  E-value: 1.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15596670   12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELV-RLLARLELGDAIPEALYRTIAEIIAFAWHLKGK 88
Cdd:PRK06298 268 AVAIGYMPEkyKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAhQLLDEGKELKFIPESTYEAIGEILLYITSLNAQ 347


                 ....
gi 15596670   89 CPEG 92
Cdd:PRK06298 348 NPNN 351
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 12-81 1.85e-06

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 44.79  E-value: 1.85e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15596670   12 AIALSYDGQ--AAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIPEALYRTIAEIIAF 81
Cdd:PRK13109 276 AIALRYERSenPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARsLYDAVQVDQVIPAEFYRPVAQILYF 348
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 12-80 3.73e-06

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 43.90  E-value: 3.73e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15596670   12 AIALSYDG--QAAPTLSAKGDAELAEAILAIARDYEVPIYENAELVR-LLARLELGDAIPEALYRTIAEIIA 80
Cdd:PRK12773 566 AVALEYKPgiHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARgLYEEVELGAEVPQQFYRAIATILS 637
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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