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Conserved domains on  [gi|15597943|ref|NP_251437|]
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hypothetical protein PA2747 [Pseudomonas aeruginosa PAO1]

Protein Classification

DUF3509 domain-containing protein( domain architecture ID 10572250)

DUF3509 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 4-89 2.06e-34

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


:

Pssm-ID: 432267  Cd Length: 87  Bit Score: 112.89  E-value: 2.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597943    4 SIKMLFDAFQATFAVSTQ-MRPDGGALLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLALEAGSLPVDVVGTLR 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSiARPDGGILLTLRDEDGTVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAALQ 80


                 ....*..
gi 15597943   83 RLQERGL 89
Cdd:pfam12021 81 SQQRFAL 87
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 4-89 2.06e-34

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 112.89  E-value: 2.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597943    4 SIKMLFDAFQATFAVSTQ-MRPDGGALLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLALEAGSLPVDVVGTLR 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSiARPDGGILLTLRDEDGTVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAALQ 80


                 ....*..
gi 15597943   83 RLQERGL 89
Cdd:pfam12021 81 SQQRFAL 87
PHA03108 PHA03108
poly(A) polymerase small subunit; Provisional
 19-68 1.11e-03

poly(A) polymerase small subunit; Provisional


Pssm-ID: 165387  Cd Length: 300  Bit Score: 36.20  E-value: 1.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 15597943   19 STQMRpdggaLLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLAL 68
Cdd:PHA03108 205 SAEMR-----LLSIYSGEPIRLRCITKSDAVKYEKKMFYLNKIVRNKIVL 249
capping_2-OMTase_Poxviridae cd20756
Cap-0 specific (nucleoside-2'-O-)-methyltransferase of poxviridae; Cap-0 specific ...
 11-68 8.63e-03

Cap-0 specific (nucleoside-2'-O-)-methyltransferase of poxviridae; Cap-0 specific (nucleoside-2'-O-)-methyltransferase (2'OMTase) catalyzes the methylation of Cap-0 (m7GpppNp) at the 2'-hydroxyl of the ribose of the first nucleotide, using S-adenosyl-L-methionine (AdoMet) as the methyl donor. This reaction is the fourth and last step in mRNA capping, the creation of the stabilizing five-prime cap (5' cap) on mRNA. Poxviridae viruses, which comprise a family of dsDNA viruses, cap their mRNAs. The 2'OMTase activity is located in the processing factor of the poly(A) polymerase, VP39.


Pssm-ID: 467731  Cd Length: 269  Bit Score: 33.78  E-value: 8.63e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15597943  11 AFQATFavSTQMRpdggaLLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLAL 68
Cdd:cd20756 179 PFAPSY--SAEMR-----LLSIYTGTPIRLRRVTKLDAVNYEKKMFYLNKIVRNKIVL 229
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 4-89 2.06e-34

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 112.89  E-value: 2.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15597943    4 SIKMLFDAFQATFAVSTQ-MRPDGGALLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLALEAGSLPVDVVGTLR 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSiARPDGGILLTLRDEDGTVIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAALQ 80


                 ....*..
gi 15597943   83 RLQERGL 89
Cdd:pfam12021 81 SQQRFAL 87
PHA03108 PHA03108
poly(A) polymerase small subunit; Provisional
 19-68 1.11e-03

poly(A) polymerase small subunit; Provisional


Pssm-ID: 165387  Cd Length: 300  Bit Score: 36.20  E-value: 1.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 15597943   19 STQMRpdggaLLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLAL 68
Cdd:PHA03108 205 SAEMR-----LLSIYSGEPIRLRCITKSDAVKYEKKMFYLNKIVRNKIVL 249
capping_2-OMTase_Poxviridae cd20756
Cap-0 specific (nucleoside-2'-O-)-methyltransferase of poxviridae; Cap-0 specific ...
 11-68 8.63e-03

Cap-0 specific (nucleoside-2'-O-)-methyltransferase of poxviridae; Cap-0 specific (nucleoside-2'-O-)-methyltransferase (2'OMTase) catalyzes the methylation of Cap-0 (m7GpppNp) at the 2'-hydroxyl of the ribose of the first nucleotide, using S-adenosyl-L-methionine (AdoMet) as the methyl donor. This reaction is the fourth and last step in mRNA capping, the creation of the stabilizing five-prime cap (5' cap) on mRNA. Poxviridae viruses, which comprise a family of dsDNA viruses, cap their mRNAs. The 2'OMTase activity is located in the processing factor of the poly(A) polymerase, VP39.


Pssm-ID: 467731  Cd Length: 269  Bit Score: 33.78  E-value: 8.63e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15597943  11 AFQATFavSTQMRpdggaLLTLRNGEEIVTRRVVSAAQLADEKRMYWFINAVRRDLAL 68
Cdd:cd20756 179 PFAPSY--SAEMR-----LLSIYTGTPIRLRRVTKLDAVNYEKKMFYLNKIVRNKIVL 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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