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Conserved domains on  [gi|15598213|ref|NP_251707|]
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hypothetical protein PA3017 [Pseudomonas aeruginosa PAO1]

Protein Classification

universal stress protein( domain architecture ID 10001747)

universal stress protein (USP) enhances the rate of cell survival during prolonged exposure to stress agents

CATH:  3.40.50.620
Gene Ontology:  GO:0042802
PubMed:  23745136|9405142|12732303
SCOP:  8083864

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
2-140 3.86e-37

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


:

Pssm-ID: 440354  Cd Length: 136  Bit Score: 123.49  E-value: 3.86e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   2 PYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAmafggDVPMDLSMLQQQQFDQARERLDAFAVRYPDLG 81
Cdd:COG0589   1 MYKRILVPTDGSEEAERALEYAAELAKALGAELHLLHVVDPPP-----SAAAGPEELEEELREEAEEALEEAAERLEEAG 75

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598213  82 SE-QRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAV 140
Cdd:COG0589  76 VEvETVVREGDPAEAILEAAEELDADLIVMGSRGRSGLRrLLLGSVAERVLRHAPCPVLVV 136
 
Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
2-140 3.86e-37

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 123.49  E-value: 3.86e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   2 PYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAmafggDVPMDLSMLQQQQFDQARERLDAFAVRYPDLG 81
Cdd:COG0589   1 MYKRILVPTDGSEEAERALEYAAELAKALGAELHLLHVVDPPP-----SAAAGPEELEEELREEAEEALEEAAERLEEAG 75

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598213  82 SE-QRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAV 140
Cdd:COG0589  76 VEvETVVREGDPAEAILEAAEELDADLIVMGSRGRSGLRrLLLGSVAERVLRHAPCPVLVV 136
USP-A-like cd23657
universal stress protein A and similar proteins; The universal stress protein UspA is a small ...
 3-140 7.96e-37

universal stress protein A and similar proteins; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced several-fold when cellular viability is challenged with heat shock, nutrient starvation, stress agents which arrest cell growth, or DNA-damaging agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, suggesting that it asserts a general "stress endurance" activity. In general, these proteins form dimers and have domains for nucleotide binding activity. The crystal structure of Haemophilus influenzae UspA reveals an asymmetric dimer with a tertiary alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, but unlike MJ0577, it lacks ATP-binding activity.


Pssm-ID: 467504  Cd Length: 138  Bit Score: 122.80  E-value: 7.96e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   3 YQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAvRYPDLGS 82
Cdd:cd23657   1 YKHILVAVDLSPESQSLVDKAVEIARENDAKLSLIHVDEDISEYYTGLIDVDIAALQDLESTMLEEALKNLS-ELAGYPV 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598213  83 EQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLAlLLGSTANDVLHGAPCDVLAV 140
Cdd:cd23657  80 DHTFIGYGDLKEEILEVAKKHNVDLIVCGHHGDFGLS-LLGSSARAVLNSAPCDVLIV 136
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 6-141 3.31e-33

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 113.66  E-value: 3.31e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213     6 ILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAVRYPDLGSEQR 85
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVKVEV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15598213    86 HLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAVH 141
Cdd:pfam00582  81 VVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSrLLLGSVAEYVLRHAPCPVLVVR 137
PRK10116 PRK10116
universal stress protein UspC; Provisional
 1-144 3.08e-08

universal stress protein UspC; Provisional


Pssm-ID: 182248  Cd Length: 142  Bit Score: 49.32  E-value: 3.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    1 MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVV-EP-MAMAFGGdvPM--DLSMLQQQqfdQARERLDAFAVR 76
Cdd:PRK10116   1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLAsDPeMYNQFAA--PMleDLRSVMQE---ETQSFLDKLIQD 75

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   77 --YPdlgSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGrHGLALLLGSTANDVLHGAPCDVLAVHLKK 144
Cdd:PRK10116  76 adYP---IEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-HSFFSRASCSAKRVIASSEVDVLLVPLTG 141
 
Name Accession Description Interval E-value
UspA COG0589
Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];
2-140 3.86e-37

Nucleotide-binding universal stress protein, UspA family [Signal transduction mechanisms];


Pssm-ID: 440354  Cd Length: 136  Bit Score: 123.49  E-value: 3.86e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   2 PYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAmafggDVPMDLSMLQQQQFDQARERLDAFAVRYPDLG 81
Cdd:COG0589   1 MYKRILVPTDGSEEAERALEYAAELAKALGAELHLLHVVDPPP-----SAAAGPEELEEELREEAEEALEEAAERLEEAG 75

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15598213  82 SE-QRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAV 140
Cdd:COG0589  76 VEvETVVREGDPAEAILEAAEELDADLIVMGSRGRSGLRrLLLGSVAERVLRHAPCPVLVV 136
USP-A-like cd23657
universal stress protein A and similar proteins; The universal stress protein UspA is a small ...
 3-140 7.96e-37

universal stress protein A and similar proteins; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced several-fold when cellular viability is challenged with heat shock, nutrient starvation, stress agents which arrest cell growth, or DNA-damaging agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, suggesting that it asserts a general "stress endurance" activity. In general, these proteins form dimers and have domains for nucleotide binding activity. The crystal structure of Haemophilus influenzae UspA reveals an asymmetric dimer with a tertiary alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, but unlike MJ0577, it lacks ATP-binding activity.


Pssm-ID: 467504  Cd Length: 138  Bit Score: 122.80  E-value: 7.96e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   3 YQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAvRYPDLGS 82
Cdd:cd23657   1 YKHILVAVDLSPESQSLVDKAVEIARENDAKLSLIHVDEDISEYYTGLIDVDIAALQDLESTMLEEALKNLS-ELAGYPV 79

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598213  83 EQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLAlLLGSTANDVLHGAPCDVLAV 140
Cdd:cd23657  80 DHTFIGYGDLKEEILEVAKKHNVDLIVCGHHGDFGLS-LLGSSARAVLNSAPCDVLIV 136
Usp pfam00582
Universal stress protein family; The universal stress protein UspA is a small cytoplasmic ...
 6-141 3.31e-33

Universal stress protein family; The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.


Pssm-ID: 425765 [Multi-domain]  Cd Length: 137  Bit Score: 113.66  E-value: 3.31e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213     6 ILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAVRYPDLGSEQR 85
Cdd:pfam00582   1 ILVAVDGSEESKRALEWAAELAKARGAELILLHVIDPPPSGAASLADESAEEEELELELAEAEALAAAAAAEAGGVKVEV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15598213    86 HLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAVH 141
Cdd:pfam00582  81 VVVVGDPAEEILEVAEEEDADLIVMGSRGRSGLSrLLLGSVAEYVLRHAPCPVLVVR 137
USP-like cd00293
universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a ...
 5-140 3.98e-29

universal stress protein (USP) and similar proteins; The universal stress protein (USP) is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although USP lacks ATP-binding activity.


Pssm-ID: 467483 [Multi-domain]  Cd Length: 135  Bit Score: 103.20  E-value: 3.98e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   5 HILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFggdVPMDLSMLQQQQFDQARERLDAFAVRYPDLGSE- 83
Cdd:cd00293   1 KILVAVDGSEESERALEWALELAKRPGAELTLLHVVDPPPSSS---LSGGLEELADELKEEAEELLEEAKKLAEEAGVEv 77

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 15598213  84 QRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGL-ALLLGSTANDVLHGAPCDVLAV 140
Cdd:cd00293  78 ETIVVEGDPAEAILEEAKELGADLIVMGSRGRSGLkRLLLGSVSEYVLRHAPCPVLVV 135
USP_At3g01520-like cd23659
universal stress protein At3g01520 and similar proteins; This subfamily includes plant and ...
 5-141 1.61e-17

universal stress protein At3g01520 and similar proteins; This subfamily includes plant and fungal proteins of unknown function, including Arabidopsis thaliana At3g01520. A. thaliana contains 44 USP domain-containing proteins; the USP domain is found either in a small protein with unknown physiological function or as an N-terminal portion of a multi-domain protein, usually a protein kinase. The gene At3g01520 of Arabidopsis thaliana encodes a 175-residue universal stress protein (USP)-like protein which is widely found in the genomes of bacteria, as well as fungi, protozoa, and plants. The bound AMP and conservation of residues in the ATP-binding loop suggest that the protein At3g01520 belongs to the ATP-binding USP subfamily. Universal stress proteins (USPs) are small cytoplasmic bacterial proteins whose expression is enhanced when the cell is exposed to stress agents. USP enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467505  Cd Length: 143  Bit Score: 73.81  E-value: 1.61e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   5 HILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQfdQARERLDAFAVRYPDLGSEQ 84
Cdd:cd23659   2 KVLIAVDGSEESEYALEWALENLHRPGDEVVLLHVIEPPSLPAASLGSGSEEWEALEE--EAREKAEKLLEKYEKKLKEE 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598213  85 R------HLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAVH 141
Cdd:cd23659  80 KgikvkvEVVAGDPGEVICKAAEELKADLIVMGSRGLGALKrTLLGSVSDYVVHHSPCPVLVVR 143
USP_Rv2623_repeat2 cd23661
universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis ...
 6-140 1.52e-13

universal stress protein Rv2623 and similar proteins, USP repeat 2; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition, Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467507 [Multi-domain]  Cd Length: 133  Bit Score: 63.30  E-value: 1.52e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   6 ILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMafGGDVPMDLSMLQQQQFDQARERLDAFAVRYPDLgSEQR 85
Cdd:cd23661   2 VVVGVDGSPASELATEIAFDEASRRGVDLVALHAWSDMGP--GGFLGIDWRESEQDQERMLAERLAGWQERYPDV-HVHK 78

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15598213  86 HLVYGQPRQEIHRlAAEQAcDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAV 140
Cdd:cd23661  79 VVVRDRPARVLLE-ASERA-QLVVVGSHGRGGFAgMLLGSVSRAVLHSAPCPVIVV 132
USP-E_repeat2 cd23660
Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP ...
 3-139 4.28e-13

Universal stress protein E, repeat 2; UspE is a tandem-type USP that consists of two USP domains. The UspE expression levels of Escherichia coli become elevated in response to oxidative stress and DNA damaging agents, including exposure to mitomycin C, cadmium, and hydrogen peroxide. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.


Pssm-ID: 467506  Cd Length: 148  Bit Score: 62.29  E-value: 4.28e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   3 YQHILVAVDLTDECDP-------VMKRAAALATSNQARLSVVHV--VEPMAMAFGGDvPMDLSMLQQQQFDQARERLDAF 73
Cdd:cd23660   1 GGRILVAVDPSNEEEYhedlnlrLIELAYSLAAQLKAELHLVSAwpVTPENIAIELP-EFDPTEYVDAIRGRHLEAMKAL 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598213  74 AVRYpDLGSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGL-ALLLGSTANDVLHGAPCDVLA 139
Cdd:cd23660  80 RQKF-GIDEEQTHVLEGLPEEVIPDFAEELDADIVVLGTVARTGLsGALIGNTAEHVLDHLNCDLLA 145
USP_Rv2623_repeat1 cd23944
universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis ...
 6-141 2.48e-10

universal stress protein Rv2623 and similar proteins, USP repeat 1; Mycobacterium tuberculosis universal stress protein Rv2623 regulates mycobacterial growth in vitro and in vivo and is required for the entry of the tubercle bacillus into the chronic phase of infection in the host. In addition Rv2623 binds ATP and the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. Rv2623 is thought to function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, although Usp lacks ATP-binding activity.


Pssm-ID: 467509  Cd Length: 140  Bit Score: 54.72  E-value: 2.48e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   6 ILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPM--DLSMLQ---QQQFDQARERLDAFAVRYPDL 80
Cdd:cd23944   2 IIVGVDGSPASDAAVRWAAREAQLRQIPLTLVHVVPPVVVSWPEGPRPaeVLDWQQdeaRQVIEQARKVAEEASGEGPPV 81

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598213  81 gSEQRHLVYGQPRQEIhrLAAEQACDLIVVGSHGRHGLA-LLLGSTANDVLHGAPCDVLAVH 141
Cdd:cd23944  82 -KVETEIVPGSPVPTL--VEASRDATMVVVGSRGIGALAgLLLGSVSTSLVRHAHCPVAVIH 140
PRK10116 PRK10116
universal stress protein UspC; Provisional
 1-144 3.08e-08

universal stress protein UspC; Provisional


Pssm-ID: 182248  Cd Length: 142  Bit Score: 49.32  E-value: 3.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    1 MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVV-EP-MAMAFGGdvPM--DLSMLQQQqfdQARERLDAFAVR 76
Cdd:PRK10116   1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLAsDPeMYNQFAA--PMleDLRSVMQE---ETQSFLDKLIQD 75

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   77 --YPdlgSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGrHGLALLLGSTANDVLHGAPCDVLAVHLKK 144
Cdd:PRK10116  76 adYP---IEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-HSFFSRASCSAKRVIASSEVDVLLVPLTG 141
PRK15005 PRK15005
universal stress protein UspF;
3-140 4.88e-08

universal stress protein UspF;


Pssm-ID: 184967 [Multi-domain]  Cd Length: 144  Bit Score: 49.03  E-value: 4.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    3 YQHILVAVDLTDE--CDPVMKRAAALATSNQARLSVVHVV------EPMAMAFGGDVPmDLSMLQQQQFDQARERLDAFA 74
Cdd:PRK15005   2 NRTILVPIDISDSelTQRVISHVEAEAKIDDAEVHFLTVIpslpyyASLGLAYSAELP-AMDDLKAEAKSQLEEIIKKFK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598213   75 VryPDlGSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAV 140
Cdd:PRK15005  81 L--PT-DRVHVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 143
PRK15118 PRK15118
universal stress protein UspA;
1-74 5.83e-06

universal stress protein UspA;


Pssm-ID: 185073  Cd Length: 144  Bit Score: 43.33  E-value: 5.83e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15598213    1 MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFA 74
Cdd:PRK15118   1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELS 74
PRK11175 PRK11175
universal stress protein UspE; Provisional
 6-140 6.74e-06

universal stress protein UspE; Provisional


Pssm-ID: 236871 [Multi-domain]  Cd Length: 305  Bit Score: 44.10  E-value: 6.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    6 ILVAVDLTDEcDP--------VMKRAAALAtsNQARLSVVHVVE-----PMAMAFggDVPmdlsmlqqqQFD-------- 64
Cdd:PRK11175 155 ILVAVNVASE-EPyhdalnekLVEEAIDLA--EQLNHAEVHLVNaypvtPINIAI--ELP---------EFDpsvyndai 220

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598213   65 --QARERLDAFAVRYpDLGSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGL-ALLLGSTANDVLHGAPCDVLAV 140
Cdd:PRK11175 221 rgQHLLAMKALRQKF-GIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLsAAFLGNTAEHVIDHLNCDLLAI 298
PRK15456 PRK15456
universal stress protein UspG; Provisional
 3-140 3.65e-03

universal stress protein UspG; Provisional


Pssm-ID: 185353  Cd Length: 142  Bit Score: 35.69  E-value: 3.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    3 YQHILVAVDLTD-ECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDAFAVRYP-DL 80
Cdd:PRK15456   2 YKTIIMPVDVFEmELSDKAVRHAEFLAQDDGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTiDP 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213   81 GSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAV 140
Cdd:PRK15456  82 SRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVV 141
PRK09982 PRK09982
universal stress protein UspD; Provisional
 1-113 3.66e-03

universal stress protein UspD; Provisional


Pssm-ID: 137627  Cd Length: 142  Bit Score: 35.37  E-value: 3.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598213    1 MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGG---DVPMDLSMLQQQQFDQARERLDAfAVRY 77
Cdd:PRK09982   1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGiyfPATEDILQLLKNKSDNKLYKLTK-NIQW 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 15598213   78 PdlgSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSH 113
Cdd:PRK09982  80 P---KTKLRIERGEMPETLLEIMQKEQCDLLVCGHH 112
PRK11175 PRK11175
universal stress protein UspE; Provisional
 1-36 3.97e-03

universal stress protein UspE; Provisional


Pssm-ID: 236871 [Multi-domain]  Cd Length: 305  Bit Score: 36.01  E-value: 3.97e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 15598213    1 MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSV 36
Cdd:PRK11175   1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITA 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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