|
Name |
Accession |
Description |
Interval |
E-value |
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
11-300 |
4.63e-82 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 250.05 E-value: 4.63e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 11 APVAPRRVSPLDRLQGWLPKLVLAPSVVVVLFCMYGYIGWTLLLSFTNSRFM-PSYKWAGLSQYQRLWDNDRWWVASKNL 89
Cdd:COG1175 2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLgPPPEFVGLDNYARLFTDPRFWNALGNT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 90 LLFGGSFIAICLVLGVFLAVLLDQRIRREGFIRTLYLYPMALSMIVTGTAWKWLLNPGLG-LDKLLRDWGWEGFrfDWLV 168
Cdd:COG1175 82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGlLNALLGALGLEPI--NWLG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 169 DPERVVYCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDL 248
Cdd:COG1175 160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 15598385 249 VAAMTAGGPGYSSDLPAMFMYAHTFTRGQMGLGAASAMLMLGAVLAIVVPYL 300
Cdd:COG1175 240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQL 291
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
61-303 |
2.04e-19 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 86.03 E-value: 2.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 61 FMPSYKWAGLSQYQRLWDNDRWWVASKNLLLFGGSFIAICLVLGVFLAVLLDQRIRREGFIRTLYLYPMALSMIVTGTAW 140
Cdd:PRK10561 32 FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 141 KWLLNPGLGL-DKLLRDWgweGFRFDWLVDPERVVYCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIY 219
Cdd:PRK10561 112 IFLFNPGRGLiTHFLAEF---GYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRF 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 220 LRIVLPSLRPVFFSALMI-LAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYAHTFTRGQMGLGAA-SAMLMLGAVLAIVV 297
Cdd:PRK10561 189 FKLALPLIAPVSFFLLVVnLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAqSVVLMFLVIVLTVV 268
|
....*.
gi 15598385 298 PYLYSE 303
Cdd:PRK10561 269 QFRYVE 274
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
90-296 |
5.16e-07 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 49.20 E-value: 5.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 90 LLFGGSFIAICLVLGVFLAVLLDQRIRR-EGFIRTLYLYPMALSMIVTGTAWKWLLnpglgldkllrdwgweGFRFDWLV 168
Cdd:cd06261 5 LLLALIATLLALVLGLLLGIILARKRGKlDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 169 DPERVVYCLVIAAVWQAsGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDL 248
Cdd:cd06261 69 LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 15598385 249 VAAMTAGGPGYSSDLPAMFmyahtFTRGQMGLGAASAMLMLGAVLAIV 296
Cdd:cd06261 148 VSFLGGGEAPGPGTGLLLI-----FAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
177-300 |
5.31e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.14 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 177 LVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGG 256
Cdd:pfam00528 55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15598385 257 PGYSSDLPAMFMYAHTFTRGqMGLGAASAMLMLGAVLAIVVPYL 300
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQG-PVLAAALILLLLNLLVDILQRLL 177
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
11-300 |
4.63e-82 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 250.05 E-value: 4.63e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 11 APVAPRRVSPLDRLQGWLPKLVLAPSVVVVLFCMYGYIGWTLLLSFTNSRFM-PSYKWAGLSQYQRLWDNDRWWVASKNL 89
Cdd:COG1175 2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLgPPPEFVGLDNYARLFTDPRFWNALGNT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 90 LLFGGSFIAICLVLGVFLAVLLDQRIRREGFIRTLYLYPMALSMIVTGTAWKWLLNPGLG-LDKLLRDWGWEGFrfDWLV 168
Cdd:COG1175 82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGlLNALLGALGLEPI--NWLG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 169 DPERVVYCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDL 248
Cdd:COG1175 160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 15598385 249 VAAMTAGGPGYSSDLPAMFMYAHTFTRGQMGLGAASAMLMLGAVLAIVVPYL 300
Cdd:COG1175 240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQL 291
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
31-283 |
3.46e-20 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 88.61 E-value: 3.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 31 LVLAPSVVVVLFC---MYGyigwtLLLSFTNsrFMPSY-----KWAGLSQYQRLWDNDRWWVASKNLLLFGGSFIAICLV 102
Cdd:COG4209 32 MLLPGLIYLLIFSylpMYG-----IVIAFKD--YNPFKgifgsPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 103 LGVFLAVLLDQrIRREGFIRT----LYLyPMALSMIVTGTAWKWLLNPGLGL-DKLLRDWGWEgfRFDWLVDPERVVYCL 177
Cdd:COG4209 105 LPIILALLLNE-LRSKRFKKTvqtiSYL-PHFLSWVVVAGIVYQFLSPDTGLvNQLLRALGGE--PINFLTEPKYFRPIY 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 178 VIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVfFSALMILA--HIAIKSFDLVAAMTAg 255
Cdd:COG4209 181 VFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPT-IVILLILNigNILNVGFEQIYLLYN- 258
|
250 260
....*....|....*....|....*....
gi 15598385 256 GPGYS-SDLPAMFMYAHTFTRGQMGLGAA 283
Cdd:COG4209 259 PLNYStSDVIDTYVYRIGLQNGDYSYATA 287
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
61-303 |
2.04e-19 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 86.03 E-value: 2.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 61 FMPSYKWAGLSQYQRLWDNDRWWVASKNLLLFGGSFIAICLVLGVFLAVLLDQRIRREGFIRTLYLYPMALSMIVTGTAW 140
Cdd:PRK10561 32 FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 141 KWLLNPGLGL-DKLLRDWgweGFRFDWLVDPERVVYCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIY 219
Cdd:PRK10561 112 IFLFNPGRGLiTHFLAEF---GYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRF 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 220 LRIVLPSLRPVFFSALMI-LAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYAHTFTRGQMGLGAA-SAMLMLGAVLAIVV 297
Cdd:PRK10561 189 FKLALPLIAPVSFFLLVVnLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAqSVVLMFLVIVLTVV 268
|
....*.
gi 15598385 298 PYLYSE 303
Cdd:PRK10561 269 QFRYVE 274
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
27-309 |
2.51e-17 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 79.77 E-value: 2.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 27 WLPKLVLAPSVVVVLFCMYGYIGWTLLLSFTNSRFmPSYKWAGLS--QYQRLWDNDRWWVASKNLLLFGGSFIAICLVLG 104
Cdd:COG1177 3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF-LTFPPEGFTlrWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 105 VFLAVLLDQ-RIRREGFIRTLYLYPMALSMIVTGTAwkwllnpglgldkLLRDWGWEGFRFDWLVdpervvycLVIAAVW 183
Cdd:COG1177 82 TPAALALARyRFRGRRLLLALLLLPLVVPGIVLGVA-------------LLLLFSALGLSGGLWG--------LILAHVV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 184 QASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSAlMILAHIAikSFD-LVAAMTAGGPGYSSd 262
Cdd:COG1177 141 FTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG-ALLAFTL--SFDeFVITLFLAGPGVTT- 216
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 15598385 263 LPaMFMYAHTFTRGQMGLGAASAMLMLGAVLAIVVPYLYSELRGKRH 309
Cdd:COG1177 217 LP-VYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
25-308 |
1.65e-13 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 69.41 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 25 QGWLPKLVLAPSVVVVLFCMYGYIGWTLLLSFTNSRFMPSYKWA-GLSQYQRLWDNDRWWVASKNLLLFGGSFIAICLVL 103
Cdd:COG1176 7 RRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 104 GVFLAVLLDQ-RIRREGFIRTLYLYPMALSMIVTGTAWKWLLNPGLGLDKLLRDWGWEGFRFDWLVDPERVVyclvIAAV 182
Cdd:COG1176 87 GYPIAYFLARaPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVV----IGLV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 183 WQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFdLVAAMTAGGpgySSD 262
Cdd:COG1176 163 YVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF-VTPALLGGG---KVL 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 15598385 263 LPAMFMYAHTFTRGQMGLGAASAMLMLGAVLAIVVPYLYSELRGKR 308
Cdd:COG1176 239 MIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRL 284
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
31-310 |
1.92e-13 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 70.58 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 31 LVLAPSVVVVLFCMYGyIGWTLLLSFTNsrfmpsykwaGLSQYQRLWDNDRWWVASKNLLLFGGSFIAICLVLGVFLAVL 110
Cdd:COG1178 12 LLLLLALLLALLVLLP-LLALLLRAFTD----------GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 111 LDQ-RIRREGFIRTLYLYPMALSMIVTGTAWKWLLNPGLGLDKLLRDWgwegfrFDWLVDPERVVYCLVIAAVWQASGFV 189
Cdd:COG1178 81 LARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRAL------FGLEPPDIYGLGGIILVLVLFNYPYV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 190 MALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMtaggpGYSSDLPAMFMY 269
Cdd:COG1178 155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL-----GGGYTTLTTAIY 229
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15598385 270 AHTFTRGQMGLGAASAMLMLGAVLAIVVPYLYSELRGKRHA 310
Cdd:COG1178 230 QAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYAT 270
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
8-297 |
6.43e-10 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 59.79 E-value: 6.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 8 YPTAPVAPRRVSPLdRLQGWLPKLVLAPSVVVVLFCM--YGYIGWTLLLSFTNSRFmpsykwaGLSQYQRLWDNDRWWVA 85
Cdd:COG1178 268 YATVGGRARRPRRV-KLGRWRWLALALCLLLVLLGLLlpLLALLLWSLTKALDDNL-------TLDNYRFVLLDPSLLRA 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 86 SKNLLLFGGSFIAICLVLGVFLAVLLD-QRIRREGFIRTLYLYPMALSMIVTGTAWKWLLNPGLGLdkLLRDWGWegfrf 164
Cdd:COG1178 340 LLNSLLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPL--LLYGTLA----- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 165 dwlvdpervvyCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIK 244
Cdd:COG1178 413 -----------ILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 15598385 245 sfDLVAAMTAGGPGYssDLPAMFMYAHTfTRGQMGLGAASAMLMLGAVLAIVV 297
Cdd:COG1178 482 --ELSATLLLRPPGF--ETLAVLIYQLA-SSGRYGEAAALALLLVLVSLLPVL 529
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
90-296 |
5.16e-07 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 49.20 E-value: 5.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 90 LLFGGSFIAICLVLGVFLAVLLDQRIRR-EGFIRTLYLYPMALSMIVTGTAWKWLLnpglgldkllrdwgweGFRFDWLV 168
Cdd:cd06261 5 LLLALIATLLALVLGLLLGIILARKRGKlDRLLRRIIDLLLSLPSLVLGLLLVLLF----------------GVLLGWGI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 169 DPERVVYCLVIAAVWQAsGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDL 248
Cdd:cd06261 69 LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 15598385 249 VAAMTAGGPGYSSDLPAMFmyahtFTRGQMGLGAASAMLMLGAVLAIV 296
Cdd:cd06261 148 VSFLGGGEAPGPGTGLLLI-----FAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
177-300 |
5.31e-06 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 46.14 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 177 LVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGG 256
Cdd:pfam00528 55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 15598385 257 PGYSSDLPAMFMYAHTFTRGqMGLGAASAMLMLGAVLAIVVPYL 300
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQG-PVLAAALILLLLNLLVDILQRLL 177
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
92-229 |
3.03e-05 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 44.74 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 92 FGGSFIA--ICLVLGVFLAVLL---DQRIRRegFIRTLYLYPMALSMIVTGTAWKWLLNPGLGLDKLLRDWGWEgFRFDW 166
Cdd:COG0555 60 LGTALIAalINLVFGLPLAWVLvryRFPGKR--LVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIK-VAFTP 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15598385 167 LvdpervvyCLVIAAVWQASGFVMALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRP 229
Cdd:COG0555 137 L--------GIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
179-258 |
4.12e-04 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 41.29 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 179 IAAVWQASGFVMAL-FLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSfdLVAA-MTAGG 256
Cdd:COG0600 129 IFVIFLGAFFPILLnTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIG--LVVAeLLGAS 206
|
..
gi 15598385 257 PG 258
Cdd:COG0600 207 SG 208
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
37-237 |
2.13e-03 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 38.92 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 37 VVVVLFCMYGYIgWTLLLSFTNSRFMPSYKWAG------LSQYQRLWDNDRWWVASKNLLLFGGSFIAICLVLGVFLAVL 110
Cdd:COG0395 22 ILLALLFLFPLY-WMVVTSFKPPAEIFSGPPSLlpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598385 111 LDQ-RIRREGFIRTLYLYPMALSMIVTGtawkwllnpgLGLDKLLRDWGWEGFRFDwlvdpervvycLVIAAVWQASGFV 189
Cdd:COG0395 101 LARfRFRGRKLLFLLILATLMIPGQVLL----------IPLYLLFRQLGLLNTYWG-----------LILPYLAFGLPFG 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 15598385 190 MALFLAGLRGVDPAIVRAAQVDGASLPTIYLRIVLPSLRPVFFSALMI 237
Cdd:COG0395 160 IFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIF 207
|
|
|