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Conserved domains on  [gi|15598939|ref|NP_252433|]
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ribosome maturation factor RimM [Pseudomonas aeruginosa PAO1]

Protein Classification

ribosome maturation factor RimM( domain architecture ID 11478117)

ribosome maturation factor RimM is an accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region

Gene Ontology:  GO:0043022|GO:0042274
PubMed:  23293003

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 2-175 9.31e-76

16S rRNA-processing protein RimM; Provisional


:

Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 223.87  E-value: 9.31e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    2 PTPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTF 81
Cdd:PRK00122   1 MSKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   82 TGYEICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagsLDDRERLLPYTGQCVLSID 161
Cdd:PRK00122  81 KGCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLK----DKKEERLIPFVEEVVKEVD 156

                        170
                 ....*....|....
gi 15598939  162 LAAGEMRVDWDADF 175
Cdd:PRK00122 157 LEAKRITVDWPEGL 170
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 2-175 9.31e-76

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 223.87  E-value: 9.31e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    2 PTPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTF 81
Cdd:PRK00122   1 MSKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   82 TGYEICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagsLDDRERLLPYTGQCVLSID 161
Cdd:PRK00122  81 KGCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLK----DKKEERLIPFVEEVVKEVD 156

                        170
                 ....*....|....
gi 15598939  162 LAAGEMRVDWDADF 175
Cdd:PRK00122 157 LEAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 6-175 4.18e-70

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 209.58  E-value: 4.18e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRR-DGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGY 84
Cdd:COG0806   4 EDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRGA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939  85 EICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagsLDDRERLLPYTGQCVLSIDLAA 164
Cdd:COG0806  84 ELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVKG----PGGKEVLIPFVDEFVPEVDLEA 159

                       170
                ....*....|.
gi 15598939 165 GEMRVDWDADF 175
Cdd:COG0806 160 GRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 8-174 7.15e-66

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 198.59  E-value: 7.15e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939     8 LVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQA-ELVRGRLHGKVLAAKLKGLDDREEARTFTGYEI 86
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTvKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    87 CIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGsldDRERLLPYTGQCVLSIDLAAGE 166
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRSKKG---KKEVLIPFVEEIVKEIDLEKKI 157


                  ....*...
gi 15598939   167 MRVDWDAD 174
Cdd:TIGR02273 158 ITVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 10-92 3.60e-30

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 105.33  E-value: 3.60e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    10 VIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRR-DGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEICI 88
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 15598939    89 PRSE 92
Cdd:pfam01782  81 PRSD 84
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 2-175 9.31e-76

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 223.87  E-value: 9.31e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    2 PTPADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTF 81
Cdd:PRK00122   1 MSKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   82 TGYEICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagsLDDRERLLPYTGQCVLSID 161
Cdd:PRK00122  81 KGCELFVPRSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILETGANDVLVVLK----DKKEERLIPFVEEVVKEVD 156

                        170
                 ....*....|....
gi 15598939  162 LAAGEMRVDWDADF 175
Cdd:PRK00122 157 LEAKRITVDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 6-175 4.18e-70

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 209.58  E-value: 4.18e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   6 DDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRR-DGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGY 84
Cdd:COG0806   4 EDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEALRGA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939  85 EICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagsLDDRERLLPYTGQCVLSIDLAA 164
Cdd:COG0806  84 ELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLETGANDVLVVKG----PGGKEVLIPFVDEFVPEVDLEA 159

                       170
                ....*....|.
gi 15598939 165 GEMRVDWDADF 175
Cdd:COG0806 160 GRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 8-174 7.15e-66

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 198.59  E-value: 7.15e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939     8 LVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQA-ELVRGRLHGKVLAAKLKGLDDREEARTFTGYEI 86
Cdd:TIGR02273   1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLILKGSKQWQTvKVARVRKQNNKLIVKFEGIDDREAAEALKGLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    87 CIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGsldDRERLLPYTGQCVLSIDLAAGE 166
Cdd:TIGR02273  81 FVPREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILETGANDVLVVRSKKG---KKEVLIPFVEEIVKEIDLEKKI 157


                  ....*...
gi 15598939   167 MRVDWDAD 174
Cdd:TIGR02273 158 ITVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 10-92 3.60e-30

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 105.33  E-value: 3.60e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    10 VIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRR-DGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEICI 88
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 15598939    89 PRSE 92
Cdd:pfam01782  81 PRSD 84
rimM PRK13828
16S rRNA-processing protein RimM; Provisional
 20-170 2.91e-27

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184351 [Multi-domain]  Cd Length: 161  Bit Score: 100.41  E-value: 2.91e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   20 IRGEVKVYSFT-DPLDnLLDYRRWTlRRDGEiRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEE 98
Cdd:PRK13828   1 VRGEVRLKSFTeDPLA-IADYGPLT-TEDGA-RSFTVALARPAKDGLVARLKGVATREAAEALRGLELYVPRDRLPELDD 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15598939   99 GEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPCAGSlddRERLLPYTGQCVLSIDLAAGEMRVD 170
Cdd:PRK13828  78 DEFYHADLIGLAAVDTGGALLGRVKAVHNFGAGDILEIAPPGGG---PTLLLPFTRAVVPTVDLAAGRVVAD 146
rimM PRK14591
16S rRNA-processing protein RimM; Provisional
 5-175 8.68e-24

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173055 [Multi-domain]  Cd Length: 169  Bit Score: 91.64  E-value: 8.68e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    5 ADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRW-----------TLRRDGEIRQAElvrgrlhgkVLAAKLKGLD 73
Cdd:PRK14591   2 SQDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWyiqlpatnvwqQLKGESVLKRAD---------KVYIKLANIN 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   74 DREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVMVVKPcagslDDRERLLPYT 153
Cdd:PRK14591  73 NADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIETGANEVLVCKE-----DNSEYLIPYV 147

                        170       180
                 ....*....|....*....|..
gi 15598939  154 GQCVLSIDLAAGEMRVDWDADF 175
Cdd:PRK14591 148 KQYIVSEDLNSKKIVVDWEYDY 169
rimM PRK13829
16S rRNA-processing protein RimM; Provisional
 7-152 1.47e-17

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184352 [Multi-domain]  Cd Length: 162  Bit Score: 75.17  E-value: 1.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    7 DLVVIGKIVSVYGIRGEVKVYSftDPLdnLLDYRRWTLRRDG--EIRQAELvrgrlHGKVLAAKLKGLDDREEARTFTGY 84
Cdd:PRK13829   2 RRTEIGRFGGPYGVQGGLKFRG--EPV--VLDLPRVYVEGLGwrAIERAER-----VGPELVLHLAGVTSREGAEALVGL 72

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15598939   85 EICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDhLLETGANDVMVVKPCAGSL-DDRERLLPY 152
Cdd:PRK13829  73 RVYADDADLPPLEEGSYYYHELRGLPVYVDGEPLGEVVD-VEDAGAQDLLVIRHVGGSLrARATYFVPL 140
rimM PRK14592
16S rRNA-processing protein RimM; Provisional
 7-134 2.35e-13

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173056 [Multi-domain]  Cd Length: 165  Bit Score: 64.36  E-value: 2.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    7 DLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTlrrDG-EIRQAELVRGRLHGKVLAaKLKGLDDREEARTFTGYE 85
Cdd:PRK14592   1 DLICLGVITSPHGIKGHVKIKTFTEDPENISAYGKLT---DGsNTYKISVVSVIGANLVIA-KISGINSRTEAELLRNKK 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 15598939   86 ICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQLLGVIDHLLETGANDVM 134
Cdd:PRK14592  77 LYVERSKLPNLNEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDII 125
rimM PRK14594
16S rRNA-processing protein RimM; Provisional
 8-137 6.38e-09

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173058 [Multi-domain]  Cd Length: 166  Bit Score: 52.48  E-value: 6.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939    8 LVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTL---RRDGEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGY 84
Cdd:PRK14594   1 MFVKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLvlkKSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIGF 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15598939   85 EICIPRSELPSLEEGEYYWHQLEGLKVIDQGRQlLGVIDHLLETGANDVMVVK 137
Cdd:PRK14594  81 ELWVDDELASKLEEGEYYFGKLIGYAIVNDGKE-LGEVVSFFECLNSVLLEVK 132
rimM PRK14590
16S rRNA-processing protein RimM; Provisional
 11-162 8.43e-08

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173054 [Multi-domain]  Cd Length: 171  Bit Score: 49.47  E-value: 8.43e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15598939   11 IGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRD---GEIRQAELVRGRLHGKVLAAKLKGLDDREEARTFTGYEIC 87
Cdd:PRK14590   3 LGQLGKPFGIKGWLRVNVRGETLHTLKAPATLKLGKEdpqFPESEIALLEIRPHGGKFLVRFEGYDTPEEAVKWRGGSLF 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15598939   88 IPRSELPSLE-EGEYYWHQLEGLKVIDQ-GRQLLGVIDHLLETGANDVMVvkpCAGSlDDRERLLPYTGQCVLSIDL 162
Cdd:PRK14590  83 LPQELLPKIEtKGEFYSEDLIGLQAIDEtGKPLNWKLTDVQDNPAHPILV---FIKG-EGEEILIPFLNVFVGDLDL 155
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 98-161 2.34e-04

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 38.04  E-value: 2.34e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15598939    98 EGEYYWHQLEGLKVIDQGRQLLGVIDHL-LETGANDVM-VVKPCAGSLDDRERLLPYTGQCVLSID 161
Cdd:pfam05239   1 EDEFYASDLIGLEVYTEDGEKLGKVKDVvIDEGEGRVRyLVVSVGGFLGGKEVLIPFDKLNVKLGK 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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