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Conserved domains on  [gi|15599336|ref|NP_252830|]
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hypothetical protein PA4141 [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5862 pfam19180
Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown ...
 19-86 5.49e-08

Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown function predominantly found in Ascoviridae. This family also includes uncharacterized proteins found in Bacteria.


:

Pssm-ID: 437027  Cd Length: 68  Bit Score: 45.68  E-value: 5.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599336   19 GMIVGAVDGAATGMAIGGKWGGAGGFGFGALSQLVGLIVPTAMGAIAGGTVGLFTNAETAVGYLGQYR 86
Cdd:pfam19180  1 GAIWGAGDGAATGMAIGGKVSGAGGWIFGGISQLVGLTVGPIVGTVVGGVAGLLSGRDEVAELLADYR 68
 
Name Accession Description Interval E-value
DUF5862 pfam19180
Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown ...
 19-86 5.49e-08

Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown function predominantly found in Ascoviridae. This family also includes uncharacterized proteins found in Bacteria.


Pssm-ID: 437027  Cd Length: 68  Bit Score: 45.68  E-value: 5.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599336   19 GMIVGAVDGAATGMAIGGKWGGAGGFGFGALSQLVGLIVPTAMGAIAGGTVGLFTNAETAVGYLGQYR 86
Cdd:pfam19180  1 GAIWGAGDGAATGMAIGGKVSGAGGWIFGGISQLVGLTVGPIVGTVVGGVAGLLSGRDEVAELLADYR 68
 
Name Accession Description Interval E-value
DUF5862 pfam19180
Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown ...
 19-86 5.49e-08

Family of unknown function (DUF5862); This is a family of uncharacterized proteins of unknown function predominantly found in Ascoviridae. This family also includes uncharacterized proteins found in Bacteria.


Pssm-ID: 437027  Cd Length: 68  Bit Score: 45.68  E-value: 5.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15599336   19 GMIVGAVDGAATGMAIGGKWGGAGGFGFGALSQLVGLIVPTAMGAIAGGTVGLFTNAETAVGYLGQYR 86
Cdd:pfam19180  1 GAIWGAGDGAATGMAIGGKVSGAGGWIFGGISQLVGLTVGPIVGTVVGGVAGLLSGRDEVAELLADYR 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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