NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15599490|ref|NP_252984|]
View 

hypothetical protein PA4294 [Pseudomonas aeruginosa PAO1]

Protein Classification

TadE/TadG family type IV pilus assembly protein( domain architecture ID 11471839)

TadE/TadG family type IV pilus assembly protein such as TadE/TadG that may act to assemble or export Flp pilus in various bacteria

Gene Ontology:  GO:0009297

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TadG COG4961
Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, ...
 18-51 5.53e-05

Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443987 [Multi-domain]  Cd Length: 152  Bit Score: 41.33  E-value: 5.53e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15599490  18 KAFRRRQHGAVAIEFTAIFLLFFALVYGLISYSI 51
Cdd:COG4961  11 RRFRRDERGAAAVEFALVLPVLLLLLGGIIEFGR 44
 
Name Accession Description Interval E-value
TadG COG4961
Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, ...
 18-51 5.53e-05

Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443987 [Multi-domain]  Cd Length: 152  Bit Score: 41.33  E-value: 5.53e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15599490  18 KAFRRRQHGAVAIEFTAIFLLFFALVYGLISYSI 51
Cdd:COG4961  11 RRFRRDERGAAAVEFALVLPVLLLLLGGIIEFGR 44
 
Name Accession Description Interval E-value
TadG COG4961
Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, ...
 18-51 5.53e-05

Flp pilus assembly protein TadG, includes N-terminal TadE domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443987 [Multi-domain]  Cd Length: 152  Bit Score: 41.33  E-value: 5.53e-05
                        10        20        30
                ....*....|....*....|....*....|....
gi 15599490  18 KAFRRRQHGAVAIEFTAIFLLFFALVYGLISYSI 51
Cdd:COG4961  11 RRFRRDERGAAAVEFALVLPVLLLLLGGIIEFGR 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH