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Conserved domains on  [gi|15600446|ref|NP_253940|]
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alginate regulatory protein AlgP [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 3.44e-66

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


:

Pssm-ID: 439492  Cd Length: 132  Bit Score: 204.93  E-value: 3.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600446    2 SANKKPVTTPLHLLQQLSHSLVEHLEGACKQALVDSEKLLAKLEKQRGKAQEKLHKARTKLQDAAKAGKTKAQAKARETI 81
Cdd:NF038178   1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15600446   82 SDLEEALDTLKARQADTRTYIVGLKRDVQESLKLAQGVGKVKEAAGKALESR 133
Cdd:NF038178  81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
 
Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 3.44e-66

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


Pssm-ID: 439492  Cd Length: 132  Bit Score: 204.93  E-value: 3.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600446    2 SANKKPVTTPLHLLQQLSHSLVEHLEGACKQALVDSEKLLAKLEKQRGKAQEKLHKARTKLQDAAKAGKTKAQAKARETI 81
Cdd:NF038178   1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15600446   82 SDLEEALDTLKARQADTRTYIVGLKRDVQESLKLAQGVGKVKEAAGKALESR 133
Cdd:NF038178  81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
valS PRK05729
valyl-tRNA synthetase; Reviewed
 34-97 1.38e-04

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 43.94  E-value: 1.38e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600446   34 LVDSEKLLAKLEKQRGKAQEKLHKARTKLQDA---AKAgktKAQ--AKARETISDLEEALDTLKARQAD 97
Cdd:PRK05729 806 LIDVEAELARLEKELAKLEKEIERVEKKLSNEgfvAKA---PEEvvEKEREKLAEYEEKLAKLKERLAR 871
 
Name Accession Description Interval E-value
AlgP_Nterm NF038178
AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a ...
 2-133 3.44e-66

AlgP family protein N-terminal domain; This HMM describes the conserved N-terminal domain of a protein that has extensive lysine-rich repeats in the C-terminal half, typically PAAK, and is called histone-like for that reason. Some reports have called AlgP (also called AlgR3) a regulator of alginate biosynthesis, responsible for a mucoid phenotype in Pseudomonas aeruginosa, but recent work casts doubt on the specificity of the connection to alginate.


Pssm-ID: 439492  Cd Length: 132  Bit Score: 204.93  E-value: 3.44e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600446    2 SANKKPVTTPLHLLQQLSHSLVEHLEGACKQALVDSEKLLAKLEKQRGKAQEKLHKARTKLQDAAKAGKTKAQAKARETI 81
Cdd:NF038178   1 SAKKKPVTTPLHLLQQLSGSLLEHLEKACSQALADAEKLLAKLEKQRGKAQEKLHKARTKLQDAASAGKAKAQAKARAAI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 15600446   82 SDLEEALDTLKARQADTRTYIVGLKRDVQESLKLAQGVGKVKEAAGKALESR 133
Cdd:NF038178  81 GELEELLDLLKARQSETRTYIAQLKRDAQESLKLAQGVGKVREAAAKALASR 132
valS PRK05729
valyl-tRNA synthetase; Reviewed
 34-97 1.38e-04

valyl-tRNA synthetase; Reviewed


Pssm-ID: 235582 [Multi-domain]  Cd Length: 874  Bit Score: 43.94  E-value: 1.38e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15600446   34 LVDSEKLLAKLEKQRGKAQEKLHKARTKLQDA---AKAgktKAQ--AKARETISDLEEALDTLKARQAD 97
Cdd:PRK05729 806 LIDVEAELARLEKELAKLEKEIERVEKKLSNEgfvAKA---PEEvvEKEREKLAEYEEKLAKLKERLAR 871
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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