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Conserved domains on  [gi|15600518|ref|NP_254012|]
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hypothetical protein PA5325 [Pseudomonas aeruginosa PAO1]

Protein Classification

SphA family protein( domain architecture ID 10008483)

SphA family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SphA COG4313
Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope ...
1-314 1.77e-107

Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443454  Cd Length: 303  Bit Score: 315.33  E-value: 1.77e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   1 MNPIRPHRPLRLAACVTLAVSCCTHASEGGVDNIGPGTDGFFtlpldVDNLPDHMFAFNVYYNHYEARKLNISSFGGKVS 80
Cdd:COG4313   1 MKKSSRRLLLAAALAAALLAAGPAQATEGGLGHYPLGVEGFL-----AGALPPPGFYFLNYYYYYSADALRDNNGDKLPA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518  81 DVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYLRQRV--AAFGLSDERESMGDTTFAPIIL-WDMGKDLTLAAAVEVT 157
Cdd:COG4313  76 GFDATVDANALRLIYVTDTKVLGANYGFSAIVPLVSLDVdaNVGGVSDSRTGLGDIYLGPLILgWHPSPNLHVVAGLDIY 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518 158 VPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQIFHFDYSASYRVTDNLRLGLNG 237
Cdd:COG4313 156 APTGSYDPNRLANPGLNYWTFDPTLAFTYLFDDGWELSAKLGYDFNTKNPDTDYQSGQEFHLDYALGKHFGKGWRLGLVG 235
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600518 238 YYLKQTTDDKQNGETVrvfgfgeevdDGVRGQVFAIGPAVHLTF-LKYASAEIRWAKEFDVENRPEGDMLWAKLTIPF 314
Cdd:COG4313 236 YYYKQLTDDSGPGARL----------DGFRGRVFALGPGVGYDFpPGGFSLSLKWYHEFGARNRPEGDALWLRLSIPF 303
 
Name Accession Description Interval E-value
SphA COG4313
Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope ...
1-314 1.77e-107

Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443454  Cd Length: 303  Bit Score: 315.33  E-value: 1.77e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   1 MNPIRPHRPLRLAACVTLAVSCCTHASEGGVDNIGPGTDGFFtlpldVDNLPDHMFAFNVYYNHYEARKLNISSFGGKVS 80
Cdd:COG4313   1 MKKSSRRLLLAAALAAALLAAGPAQATEGGLGHYPLGVEGFL-----AGALPPPGFYFLNYYYYYSADALRDNNGDKLPA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518  81 DVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYLRQRV--AAFGLSDERESMGDTTFAPIIL-WDMGKDLTLAAAVEVT 157
Cdd:COG4313  76 GFDATVDANALRLIYVTDTKVLGANYGFSAIVPLVSLDVdaNVGGVSDSRTGLGDIYLGPLILgWHPSPNLHVVAGLDIY 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518 158 VPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQIFHFDYSASYRVTDNLRLGLNG 237
Cdd:COG4313 156 APTGSYDPNRLANPGLNYWTFDPTLAFTYLFDDGWELSAKLGYDFNTKNPDTDYQSGQEFHLDYALGKHFGKGWRLGLVG 235
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600518 238 YYLKQTTDDKQNGETVrvfgfgeevdDGVRGQVFAIGPAVHLTF-LKYASAEIRWAKEFDVENRPEGDMLWAKLTIPF 314
Cdd:COG4313 236 YYYKQLTDDSGPGARL----------DGFRGRVFALGPGVGYDFpPGGFSLSLKWYHEFGARNRPEGDALWLRLSIPF 303
Phenol_MetA_deg pfam13557
Putative MetA-pathway of phenol degradation;
67-310 1.06e-47

Putative MetA-pathway of phenol degradation;


Pssm-ID: 463920  Cd Length: 237  Bit Score: 159.96  E-value: 1.06e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518    67 ARKLNISSFGGKVSDVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYLRQRVAAFG-----LSDERESMGDTTFAPIIL 141
Cdd:pfam13557   1 ADRPGDSGGGYTVGGGDLQVEAGLPRFVYVTDTTLGGASLGRYGLLPFGWLDLKLDGggpgaYSDSRSGLGDLTLGPKIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   142 -WDM-GKDLTLAAAVEVTVPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQIFHF 219
Cdd:pfam13557  81 gWEDkGGNPHVALYLGVNLPTGDYDKNALANPGLNYWSFSPTLALTYQLGPGWELSANLGYDFNGENDDTDYQSGQEFHL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   220 DYSASYRVTDN-LRLGLNGYYLKqttddKQNGetvrvfgfgeevDDGVRGQVFAIGPAVHLTFLKYASAEIRWAK--EFD 296
Cdd:pfam13557 161 DFALGYAVTNGkWSVGLVGYYYK-----SGGG------------ADGDRGRVFALGPGLAYLFTPNLQLDASAGKglEFA 223
                         250
                  ....*....|....
gi 15600518   297 VENRPEGDMLWAKL 310
Cdd:pfam13557 224 ARNRFEGAGLSLRF 237
 
Name Accession Description Interval E-value
SphA COG4313
Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope ...
1-314 1.77e-107

Sphingosine uptake channel SphA-related outer membrane channel [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443454  Cd Length: 303  Bit Score: 315.33  E-value: 1.77e-107
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   1 MNPIRPHRPLRLAACVTLAVSCCTHASEGGVDNIGPGTDGFFtlpldVDNLPDHMFAFNVYYNHYEARKLNISSFGGKVS 80
Cdd:COG4313   1 MKKSSRRLLLAAALAAALLAAGPAQATEGGLGHYPLGVEGFL-----AGALPPPGFYFLNYYYYYSADALRDNNGDKLPA 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518  81 DVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYLRQRV--AAFGLSDERESMGDTTFAPIIL-WDMGKDLTLAAAVEVT 157
Cdd:COG4313  76 GFDATVDANALRLIYVTDTKVLGANYGFSAIVPLVSLDVdaNVGGVSDSRTGLGDIYLGPLILgWHPSPNLHVVAGLDIY 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518 158 VPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQIFHFDYSASYRVTDNLRLGLNG 237
Cdd:COG4313 156 APTGSYDPNRLANPGLNYWTFDPTLAFTYLFDDGWELSAKLGYDFNTKNPDTDYQSGQEFHLDYALGKHFGKGWRLGLVG 235
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15600518 238 YYLKQTTDDKQNGETVrvfgfgeevdDGVRGQVFAIGPAVHLTF-LKYASAEIRWAKEFDVENRPEGDMLWAKLTIPF 314
Cdd:COG4313 236 YYYKQLTDDSGPGARL----------DGFRGRVFALGPGVGYDFpPGGFSLSLKWYHEFGARNRPEGDALWLRLSIPF 303
Phenol_MetA_deg pfam13557
Putative MetA-pathway of phenol degradation;
67-310 1.06e-47

Putative MetA-pathway of phenol degradation;


Pssm-ID: 463920  Cd Length: 237  Bit Score: 159.96  E-value: 1.06e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518    67 ARKLNISSFGGKVSDVKISSDAIIPRLDYLSPLRIFGGRLGGYIAQPYLRQRVAAFG-----LSDERESMGDTTFAPIIL 141
Cdd:pfam13557   1 ADRPGDSGGGYTVGGGDLQVEAGLPRFVYVTDTTLGGASLGRYGLLPFGWLDLKLDGggpgaYSDSRSGLGDLTLGPKIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   142 -WDM-GKDLTLAAAVEVTVPTGKYDAERLANTSNNFYTYKPLFSFTWLPTERTELSLKATYSFNMENHDTDYRSGQIFHF 219
Cdd:pfam13557  81 gWEDkGGNPHVALYLGVNLPTGDYDKNALANPGLNYWSFSPTLALTYQLGPGWELSANLGYDFNGENDDTDYQSGQEFHL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   220 DYSASYRVTDN-LRLGLNGYYLKqttddKQNGetvrvfgfgeevDDGVRGQVFAIGPAVHLTFLKYASAEIRWAK--EFD 296
Cdd:pfam13557 161 DFALGYAVTNGkWSVGLVGYYYK-----SGGG------------ADGDRGRVFALGPGLAYLFTPNLQLDASAGKglEFA 223
                         250
                  ....*....|....
gi 15600518   297 VENRPEGDMLWAKL 310
Cdd:pfam13557 224 ARNRFEGAGLSLRF 237
MtrB_PioB pfam11854
Putative outer membrane beta-barrel porin, MtrB/PioB; MtrB-PioB is a family of bacterial ...
163-250 4.10e-04

Putative outer membrane beta-barrel porin, MtrB/PioB; MtrB-PioB is a family of bacterial putative outer membrane porins. This family, is secreted as part of the pio (phototrophic iron oxidation) operon that has been found to couple the oxidation of ferrous iron [Fe(II)] to reductive CO2 fixation using light energy. PioABC is found in Rhodopseudomonas palustris and MtrB-PioB is likely to be a beta-barrel porin. Similar to other outer membrane porins, PioB and MtrB are predicted to have long loops protruding into the extracellular space and short turns on the periplasmic side.


Pssm-ID: 432132 [Multi-domain]  Cd Length: 632  Bit Score: 41.94  E-value: 4.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600518   163 YDAERLANTSNNFytykPLFSFTWLPTERTELSLKATYS--------FNMENHDTDY-------RSGQIFHFDYSASYRV 227
Cdd:pfam11854 404 YQGSENTSSESNA----LLRKYYLADRDRTKARLRLNYQpiedlslgLTARYANDDYdetdiglTESEDYGYDLDANYQL 479
                          90       100
                  ....*....|....*....|...
gi 15600518   228 TDNLRLglNGYYLKQTTDDKQNG 250
Cdd:pfam11854 480 SEGLSL--YAFYSQQWIDSAQAG 500
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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