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Conserved domains on  [gi|15600521|ref|NP_254015|]
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mono-heme cytochrome C [Pseudomonas aeruginosa PAO1]

Protein Classification

c-type cytochrome( domain architecture ID 10007114)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as cytochrome c5 and cytochrome c-555, both of which bind 1 heme group per subunit

CATH:  1.10.760.10
Gene Ontology:  GO:0046872|GO:0009055|GO:0020037
PubMed:  10647174|12594933|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
38-125 1.39e-36

Cytochrome c5 [Energy production and conversion];


:

Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 120.55  E-value: 1.39e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600521  38 ARAADSQRVPAEPALAQVYSASCKLCHADPASGAPLTGDAAAWAPRLAQGIDTLLDHSINGYKGMPPMGMCMQCSEEQFR 117
Cdd:COG3245  21 VALAAAAAAAAARSGEAVYNATCAACHATGVAGAPKLGDKAAWAPRIAKGMDTLLKHAINGFNAMPPKGGCADLSDDEVK 100


                ....*...
gi 15600521 118 ALIDFMSA 125
Cdd:COG3245 101 AAVDYMVN 108
 
Name Accession Description Interval E-value
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
38-125 1.39e-36

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 120.55  E-value: 1.39e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600521  38 ARAADSQRVPAEPALAQVYSASCKLCHADPASGAPLTGDAAAWAPRLAQGIDTLLDHSINGYKGMPPMGMCMQCSEEQFR 117
Cdd:COG3245  21 VALAAAAAAAAARSGEAVYNATCAACHATGVAGAPKLGDKAAWAPRIAKGMDTLLKHAINGFNAMPPKGGCADLSDDEVK 100


                ....*...
gi 15600521 118 ALIDFMSA 125
Cdd:COG3245 101 AAVDYMVN 108
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
53-123 1.84e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 52.79  E-value: 1.84e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15600521    53 AQVYSASCKLCHADPASGAPLTGDaaAWAPrlaqgiDTLLDHSINGYKGMPPMGmcMQCSEEQFRALIDFM 123
Cdd:pfam13442   7 EALYAANCASCHGTGGAGPSLAGR--ALPP------EALVDIIRNGKGAMPAFG--GDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
38-125 1.39e-36

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 120.55  E-value: 1.39e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15600521  38 ARAADSQRVPAEPALAQVYSASCKLCHADPASGAPLTGDAAAWAPRLAQGIDTLLDHSINGYKGMPPMGMCMQCSEEQFR 117
Cdd:COG3245  21 VALAAAAAAAAARSGEAVYNATCAACHATGVAGAPKLGDKAAWAPRIAKGMDTLLKHAINGFNAMPPKGGCADLSDDEVK 100


                ....*...
gi 15600521 118 ALIDFMSA 125
Cdd:COG3245 101 AAVDYMVN 108
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
53-123 1.84e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 52.79  E-value: 1.84e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15600521    53 AQVYSASCKLCHADPASGAPLTGDaaAWAPrlaqgiDTLLDHSINGYKGMPPMGmcMQCSEEQFRALIDFM 123
Cdd:pfam13442   7 EALYAANCASCHGTGGAGPSLAGR--ALPP------EALVDIIRNGKGAMPAFG--GDLSDEELEALAAYL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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