NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15830453|ref|NP_309226|]
View 

phage antirepressor protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

ORF6N and P22_AR_C domain-containing protein( domain architecture ID 10565602)

ORF6N and P22_AR_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P22_AR_C super family cl11179
P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found ...
 144-216 2.20e-24

P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found associated with pfam10547.


The actual alignment was detected with superfamily member pfam10548:

Pssm-ID: 402261  Cd Length: 73  Bit Score: 92.44  E-value: 2.20e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15830453   144 EKKLNGLSAKETDSLVWLWDYANRSQALFRELYPALKLIQSGYSGICHDYGYEFSYIIGRARGVLINHTRDID 216
Cdd:pfam10548   1 EKFTVELTEKELQQLVWLWFALVRMVELLGDLEPALRAIGSNLSGKAYSYAHEYGSTLRIARRVLNRLTADFK 73
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 10-114 2.66e-20

ORF6N domain; This domain was identified by Iyer and colleagues.


:

Pssm-ID: 431348  Cd Length: 84  Bit Score: 81.82  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830453    10 LSPITHNQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGkHFFKVVGNDLKELRvalnySQNLRVTLSNSqnlqpsl 89
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFPED-FMFQLTKEELRNLR-----SQFVTSSGGGR------- 67

                          90       100
                  ....*....|....*....|....*
gi 15830453    90 rglqispkARSLILWTERGAARHAK 114
Cdd:pfam10543  68 --------RYLPYAFTEQGVAMLAK 84
 
Name Accession Description Interval E-value
P22_AR_C pfam10548
P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found ...
 144-216 2.20e-24

P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found associated with pfam10547.


Pssm-ID: 402261  Cd Length: 73  Bit Score: 92.44  E-value: 2.20e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15830453   144 EKKLNGLSAKETDSLVWLWDYANRSQALFRELYPALKLIQSGYSGICHDYGYEFSYIIGRARGVLINHTRDID 216
Cdd:pfam10548   1 EKFTVELTEKELQQLVWLWFALVRMVELLGDLEPALRAIGSNLSGKAYSYAHEYGSTLRIARRVLNRLTADFK 73
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 10-114 2.66e-20

ORF6N domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431348  Cd Length: 84  Bit Score: 81.82  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830453    10 LSPITHNQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGkHFFKVVGNDLKELRvalnySQNLRVTLSNSqnlqpsl 89
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFPED-FMFQLTKEELRNLR-----SQFVTSSGGGR------- 67

                          90       100
                  ....*....|....*....|....*
gi 15830453    90 rglqispkARSLILWTERGAARHAK 114
Cdd:pfam10543  68 --------RYLPYAFTEQGVAMLAK 84
 
Name Accession Description Interval E-value
P22_AR_C pfam10548
P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found ...
 144-216 2.20e-24

P22AR C-terminal domain; This domain was identified by Iyer and colleagues. It is found associated with pfam10547.


Pssm-ID: 402261  Cd Length: 73  Bit Score: 92.44  E-value: 2.20e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15830453   144 EKKLNGLSAKETDSLVWLWDYANRSQALFRELYPALKLIQSGYSGICHDYGYEFSYIIGRARGVLINHTRDID 216
Cdd:pfam10548   1 EKFTVELTEKELQQLVWLWFALVRMVELLGDLEPALRAIGSNLSGKAYSYAHEYGSTLRIARRVLNRLTADFK 73
ORF6N pfam10543
ORF6N domain; This domain was identified by Iyer and colleagues.
 10-114 2.66e-20

ORF6N domain; This domain was identified by Iyer and colleagues.


Pssm-ID: 431348  Cd Length: 84  Bit Score: 81.82  E-value: 2.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830453    10 LSPITHNQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGkHFFKVVGNDLKELRvalnySQNLRVTLSNSqnlqpsl 89
Cdd:pfam10543   1 LKIYEIRGQRVMLDSDLAELYGVETKRLNQAVKRNIERFPED-FMFQLTKEELRNLR-----SQFVTSSGGGR------- 67

                          90       100
                  ....*....|....*....|....*
gi 15830453    90 rglqispkARSLILWTERGAARHAK 114
Cdd:pfam10543  68 --------RYLPYAFTEQGVAMLAK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH