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Conserved domains on  [gi|15832115|ref|NP_310888|]
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colanic acid polymerase [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
WcaD super family cl42939
putative colanic acid polymerase WcaD; This membrane protein is believed to function as the ...
1-404 0e+00

putative colanic acid polymerase WcaD; This membrane protein is believed to function as the colanic acid repeating unit polymerase (in an analagous fashion to wzy proteins in O-antigen polymerization).


The actual alignment was detected with superfamily member TIGR04010:

Pssm-ID: 188525  Cd Length: 404  Bit Score: 645.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115     1 MSTSIRICSYLLLPLIYLLVNVKITQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGICAGLTAFNYLFGQSLDASK 80
Cdd:TIGR04010   1 MSRSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFVERISVKKLMIALGIGAGLTAFNYLFGQSLDASK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115    81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL 160
Cdd:TIGR04010  81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNYRKILRFFYLVVGFVVALAAVEMAQIILTGGSSLMEGISKYLIYSNSYVL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIK 240
Cdd:TIGR04010 161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKDAIK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   241 KKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
Cdd:TIGR04010 241 KKLPLAIISLAVFLVGVVFAFPYIATRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   321 GKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400
Cdd:TIGR04010 321 GKTIDNGLYLLIIYFSWFAVLLTLWYMFKVLKMMLNAFGDNQNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400

                  ....
gi 15832115   401 LNIT 404
Cdd:TIGR04010 401 LNIT 404
 
Name Accession Description Interval E-value
WcaD TIGR04010
putative colanic acid polymerase WcaD; This membrane protein is believed to function as the ...
1-404 0e+00

putative colanic acid polymerase WcaD; This membrane protein is believed to function as the colanic acid repeating unit polymerase (in an analagous fashion to wzy proteins in O-antigen polymerization).


Pssm-ID: 188525  Cd Length: 404  Bit Score: 645.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115     1 MSTSIRICSYLLLPLIYLLVNVKITQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGICAGLTAFNYLFGQSLDASK 80
Cdd:TIGR04010   1 MSRSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFVERISVKKLMIALGIGAGLTAFNYLFGQSLDASK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115    81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL 160
Cdd:TIGR04010  81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNYRKILRFFYLVVGFVVALAAVEMAQIILTGGSSLMEGISKYLIYSNSYVL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIK 240
Cdd:TIGR04010 161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKDAIK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   241 KKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
Cdd:TIGR04010 241 KKLPLAIISLAVFLVGVVFAFPYIATRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   321 GKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400
Cdd:TIGR04010 321 GKTIDNGLYLLIIYFSWFAVLLTLWYMFKVLKMMLNAFGDNQNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400

                  ....
gi 15832115   401 LNIT 404
Cdd:TIGR04010 401 LNIT 404
 
Name Accession Description Interval E-value
WcaD TIGR04010
putative colanic acid polymerase WcaD; This membrane protein is believed to function as the ...
1-404 0e+00

putative colanic acid polymerase WcaD; This membrane protein is believed to function as the colanic acid repeating unit polymerase (in an analagous fashion to wzy proteins in O-antigen polymerization).


Pssm-ID: 188525  Cd Length: 404  Bit Score: 645.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115     1 MSTSIRICSYLLLPLIYLLVNVKITQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGICAGLTAFNYLFGQSLDASK 80
Cdd:TIGR04010   1 MSRSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFVERISVKKLMIALGIGAGLTAFNYLFGQSLDASK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115    81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL 160
Cdd:TIGR04010  81 YVTSTMLFVYIVIIIGMVWSIRFKTISPHNYRKILRFFYLVVGFVVALAAVEMAQIILTGGSSLMEGISKYLIYSNSYVL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIK 240
Cdd:TIGR04010 161 NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKDAIK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   241 KKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
Cdd:TIGR04010 241 KKLPLAIISLAVFLVGVVFAFPYIATRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADV 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15832115   321 GKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400
Cdd:TIGR04010 321 GKTIDNGLYLLIIYFSWFAVLLTLWYMFKVLKMMLNAFGDNQNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKA 400

                  ....
gi 15832115   401 LNIT 404
Cdd:TIGR04010 401 LNIT 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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