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Conserved domains on  [gi|1447699717|ref|NP_311754|]
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type III secretion protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPAN super family cl19597
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 97-178 2.23e-10

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


The actual alignment was detected with superfamily member pfam02510:

Pssm-ID: 302938  Cd Length: 336  Bit Score: 58.32  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699717  97 SANNANVRENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHEEQ 175
Cdd:pfam02510 252 TADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQ 329


                  ...
gi 1447699717 176 ENE 178
Cdd:pfam02510 330 SGE 332
 
Name Accession Description Interval E-value
SPAN pfam02510
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 97-178 2.23e-10

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


Pssm-ID: 280643  Cd Length: 336  Bit Score: 58.32  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699717  97 SANNANVRENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHEEQ 175
Cdd:pfam02510 252 TADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQ 329


                  ...
gi 1447699717 176 ENE 178
Cdd:pfam02510 330 SGE 332
PRK15334 PRK15334
type III secretion system protein SpaN;
97-178 1.38e-07

type III secretion system protein SpaN;


Pssm-ID: 185234 [Multi-domain]  Cd Length: 336  Bit Score: 50.18  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699717  97 SANNANVRENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHEEQ 175
Cdd:PRK15334  252 TADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQ 329


                  ...
gi 1447699717 176 ENE 178
Cdd:PRK15334  330 SGE 332
 
Name Accession Description Interval E-value
SPAN pfam02510
Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), ...
 97-178 2.23e-10

Surface presentation of antigens protein; Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.


Pssm-ID: 280643  Cd Length: 336  Bit Score: 58.32  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699717  97 SANNANVRENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHEEQ 175
Cdd:pfam02510 252 TADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQ 329


                  ...
gi 1447699717 176 ENE 178
Cdd:pfam02510 330 SGE 332
PRK15334 PRK15334
type III secretion system protein SpaN;
97-178 1.38e-07

type III secretion system protein SpaN;


Pssm-ID: 185234 [Multi-domain]  Cd Length: 336  Bit Score: 50.18  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699717  97 SANNANVRENELTYQFQRWGQNHTVRILESSEG-IRLKPSDTLVSDRLHEAQHNDvTAQRWVLTeQDERQGQRHQPHEEQ 175
Cdd:PRK15334  252 TADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGeFSLIPSNTQVEHRLHDQWQNG-NPQRWHLT-RDDQQNPQQQQHRQQ 329


                  ...
gi 1447699717 176 ENE 178
Cdd:PRK15334  330 SGE 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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