NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1447699740|ref|NP_311941|]
View 

permease of ferrichrome ABC transporter [Escherichia coli O157:H7 str. Sakai]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 39-342 3.60e-83

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 254.22  E-value: 3.60e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  39 GLMHGSFFVPASEVGRALFAPeNVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVA 118
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP-DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 119 VLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREISRP---RFVLIGIGVSWFFAAGIGVFMTTADVRDVQTALMWL 195
Cdd:COG0609    80 AVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLsplRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 196 SGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGL 275
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699740 276 IAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 39-342 3.60e-83

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 254.22  E-value: 3.60e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  39 GLMHGSFFVPASEVGRALFAPeNVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVA 118
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP-DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 119 VLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREISRP---RFVLIGIGVSWFFAAGIGVFMTTADVRDVQTALMWL 195
Cdd:COG0609    80 AVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLsplRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 196 SGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGL 275
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699740 276 IAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 33-340 4.98e-68

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 215.85  E-value: 4.98e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  33 VGILIFGLMHGSFFVPASEVGRALFAPENVStdARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVK 112
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLGGDDSL--AALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 113 EGCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCARE---ISRPRFVLIGIGVSWFFAAGIGVFMTTADVRDVQ 189
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGrggASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 190 TALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGN 269
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447699740 270 IGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQ 340
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
62-342 5.05e-54

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 187.74  E-value: 5.05e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  62 VSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWRPVAGLAG 141
Cdd:PRK10577  385 LSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLG 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 142 GLLVALIVIFCAR--EISRPRFVLIGIGVSWFFAAGIGVFMTTADVRdVQTALMWLSGSLHAANWMLVGISACWMLPAAL 219
Cdd:PRK10577  465 ALAALALILLLARrgGFAPERLLLTGIALSALFTALIQLLLASGDPR-AAQLLTWLSGSTYGVTWAQALPLLIVAVLLLA 543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 220 LLLFTARTADIALLGHQVATGLGVN--SSRLALLRVAApiILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSA 297
Cdd:PRK10577  544 LALLLRRWLDLLPLGDDTARALGLPvtRARLALLLLAA--LLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAA 621

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1447699740 298 VSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:PRK10577  622 LLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 49-344 1.24e-39

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 142.30  E-value: 1.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  49 ASEVGRAL-FAPENVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSV-AVLWLIFQF 126
Cdd:TIGR03869  27 AAHLGRGEgFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLgAVAVLVLGV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 127 PMLgmfwRPVAGLAGGLLVALIVIFCAREISR---PRFVLIGIGVSWFFAAGIG-VFMTTADVRDVQTALMWLSGSLHAA 202
Cdd:TIGR03869 107 AVL----LPVAAFAGALLALAATLGLARTLGTltpTRTILAGLAVSQLCAAVTSfVIFWSATGDSYREILSWLMGSLAGA 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 203 NWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISR 282
Cdd:TIGR03869 183 TWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVR 262

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447699740 283 FILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRRNS 344
Cdd:TIGR03869 263 LLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSG 324
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 78-338 1.55e-37

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 134.99  E-value: 1.55e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  78 VIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREIS 157
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 158 RP--RFVLIGIGVSWFFAAGIgVFMTTADVRDVQTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGH 235
Cdd:cd06550    81 LSpsKLILIGIVLSAFFSAGV-ILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 236 QVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLaF 315
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT-L 238

                         250       260
                  ....*....|....*....|...
gi 1447699740 316 LPLQLPAGIIISLIGGPFFLLLL 338
Cdd:cd06550   239 LPSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 39-342 3.60e-83

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 254.22  E-value: 3.60e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  39 GLMHGSFFVPASEVGRALFAPeNVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVA 118
Cdd:COG0609     1 SLSLGAVPISLSDVLRALLGP-DGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 119 VLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREISRP---RFVLIGIGVSWFFAAGIGVFMTTADVRDVQTALMWL 195
Cdd:COG0609    80 AVLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLsplRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 196 SGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGL 275
Cdd:COG0609   160 MGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGL 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447699740 276 IAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:COG0609   240 VVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 6-342 2.23e-72

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 228.08  E-value: 2.23e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740   6 RPLRVGKFSTLVRPKNLVLLGGLFLFAVGILIFGLMHGSFFVPASEVGRALFAPEnvSTDARYIVQDIRLPRVIMALLCG 85
Cdd:COG4779     7 RVLRVGRVSLRLRRRALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEG--DPGASFVVLELRLPRALAALLVG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  86 AMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMlGMFWRPVAGLAGGLLVALIVIFCA--REISRPRFVL 163
Cdd:COG4779    85 AALGLSGAIFQSLTRNPLASPDIIGITAGASAGAVAAIVVLGG-SGLAVALGALAGGLATALLVYLLAwrGGVSGYRLIL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 164 IGIGVSWFFAAGIGVFMTTADVRDVQTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGV 243
Cdd:COG4779   164 VGIGVSAMLTAVNSYLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 244 NSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTlLLGSAVSGALLVILADSIGRLAFLPLQLPAG 323
Cdd:COG4779   244 RVERTRLLLLLVAVALAAVATAAAGPIAFVALAAPQIARRLTRSPGPP-LLPSALVGALLLLAADLVAQHLLAPVQLPVG 322

                         330
                  ....*....|....*....
gi 1447699740 324 IIISLIGGPFFLLLLWQRR 342
Cdd:COG4779   323 VVTGALGGPYLLWLLIREN 341
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 33-340 4.98e-68

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 215.85  E-value: 4.98e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  33 VGILIFGLMHGSFFVPASEVGRALFAPENVStdARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVK 112
Cdd:pfam01032   3 LLLILLSLFIGAVKISPSDVFSALLGGDDSL--AALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 113 EGCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCARE---ISRPRFVLIGIGVSWFFAAGIGVFMTTADVRDVQ 189
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGrggASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 190 TALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGN 269
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447699740 270 IGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQ 340
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
62-342 5.05e-54

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 187.74  E-value: 5.05e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  62 VSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWRPVAGLAG 141
Cdd:PRK10577  385 LSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLG 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 142 GLLVALIVIFCAR--EISRPRFVLIGIGVSWFFAAGIGVFMTTADVRdVQTALMWLSGSLHAANWMLVGISACWMLPAAL 219
Cdd:PRK10577  465 ALAALALILLLARrgGFAPERLLLTGIALSALFTALIQLLLASGDPR-AAQLLTWLSGSTYGVTWAQALPLLIVAVLLLA 543

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 220 LLLFTARTADIALLGHQVATGLGVN--SSRLALLRVAApiILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSA 297
Cdd:PRK10577  544 LALLLRRWLDLLPLGDDTARALGLPvtRARLALLLLAA--LLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAA 621

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1447699740 298 VSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:PRK10577  622 LLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
34-342 1.97e-44

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 154.82  E-value: 1.97e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  34 GILIFGLMHGSFFVPASEVGRALfapeNVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKE 113
Cdd:PRK09777   15 GCALLSLRMGVIPLPWRALLTDW----QAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNH 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 114 GCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREISRPRFVLIGIGVSWFFAAGIGVFMTTADVrDVQTALM 193
Cdd:PRK09777   91 AASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQPMKLALTGVALSALWASLTDYLMLSRPQ-DINNALL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 194 WLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFV 273
Cdd:PRK09777  170 WLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFI 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699740 274 GLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:PRK09777  250 GLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
btuC PRK09535
cobalamin ABC transporter permease BtuC;
32-341 2.88e-43

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 152.98  E-value: 2.88e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  32 AVGILIFGLMHGSFFVPASEVGRALFAPENVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGV 111
Cdd:PRK09535   53 AVTTHGVPVLSVGLSLPAPDLEYASPFSFAVPETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGV 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 112 KEGCSVAVLWLIFqFPMLGMFWRPVAGLAGGLLVALIVIFCAREISR---PRFVLIGIGVSWFFAAGIGvFMTTADVRDV 188
Cdd:PRK09535  133 SSGAAVGAVAAIV-LPLAVPFGLQAAAFAGALVAAFGVYAIATENGRtpvATLLLAGVAVQTFLGAVIS-YLLLHSGESL 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 189 QTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVG 268
Cdd:PRK09535  211 RRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAG 290

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447699740 269 NIGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAflPLQLPAGIIISLIGGPFFLLLLWQR 341
Cdd:PRK09535  291 VIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATDTVARSG--PAEVPVGIVTAALGAPFFLYLLRTR 361
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
47-344 2.92e-41

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 152.69  E-value: 2.92e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  47 VPASEVGRALFAPENVSTDARyIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQF 126
Cdd:PRK10577   36 LPLSQWLQALWGPDADDLEQL-LLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLATLFA 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 127 PMLGMFWRPVAGLAGGLLVALIVIFCA--REISRPRFVLIGIGVSWFFAAGIGVFMTTADVRdVQTALMWLSGSLHAANW 204
Cdd:PRK10577  115 PALLALASQLAAFAGGLLAAALVFALAggKRLSPLRLVLAGMVVSLYLGALTTLLLLFNEQY-LQGLFLWGAGSLAQNDW 193

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 205 MLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFI 284
Cdd:PRK10577  194 SGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLL 273

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447699740 285 LRGGQTTLLLGSAVSGALLVILADSIGRL--AFLPLQLPAGIIISLIGGPFFLLLLWQRRNS 344
Cdd:PRK10577  274 GARRLRARLPLSPLIGALLLLLTDQLVRLlaGVGGELLPTGAVTALIGAPLLLWLLPRLRSA 335
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 33-344 7.86e-41

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 145.77  E-value: 7.86e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  33 VGILIFGLMHGSFFVPASEVgralfapenVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVK 112
Cdd:COG4139    23 LLLFVLSLCAGEVWIPPTQW---------LSEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGIS 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 113 EGCSVAVLWLIFQFPMLGMFWR-PVAGLAGGLLVALIVIFCAREI-SRPRFVLIGIGVSWFFAAGIGVFMTTADVRDVQT 190
Cdd:COG4139    94 NGAGVGLVLVVLLGGGLLPPWLlSLAAIAGALLVTLLLLAFARRRlSNARLLLIGVALGIICSAIMTWAVYFSSSLDLRQ 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 191 ALMWLSGSLHAANWMLVGISACwMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNI 270
Cdd:COG4139   174 LMYWMMGSFGGVDWRQLWLLLA-LLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLATGLLVGVSVALAGPI 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447699740 271 GFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRRNS 344
Cdd:COG4139   253 GFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRRKI 326
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 49-344 1.24e-39

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 142.30  E-value: 1.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  49 ASEVGRAL-FAPENVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSV-AVLWLIFQF 126
Cdd:TIGR03869  27 AAHLGRGEgFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLgAVAVLVLGV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 127 PMLgmfwRPVAGLAGGLLVALIVIFCAREISR---PRFVLIGIGVSWFFAAGIG-VFMTTADVRDVQTALMWLSGSLHAA 202
Cdd:TIGR03869 107 AVL----LPVAAFAGALLALAATLGLARTLGTltpTRTILAGLAVSQLCAAVTSfVIFWSATGDSYREILSWLMGSLAGA 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 203 NWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISR 282
Cdd:TIGR03869 183 TWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVR 262

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1447699740 283 FILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRRNS 344
Cdd:TIGR03869 263 LLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSRSG 324
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 78-338 1.55e-37

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 134.99  E-value: 1.55e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  78 VIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALIVIFCAREIS 157
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 158 RP--RFVLIGIGVSWFFAAGIgVFMTTADVRDVQTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGH 235
Cdd:cd06550    81 LSpsKLILIGIVLSAFFSAGV-ILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 236 QVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLaF 315
Cdd:cd06550   160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRT-L 238

                         250       260
                  ....*....|....*....|...
gi 1447699740 316 LPLQLPAGIIISLIGGPFFLLLL 338
Cdd:cd06550   239 LPSELPVGPVTALLGAPYFLYLL 261
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 63-344 6.80e-36

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 132.77  E-value: 6.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  63 STDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWR-PVAGLAG 141
Cdd:PRK03784   47 SPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPPWAlSLCAIAG 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 142 GLLVALIVIFCAR--EISRPRFVLIGIgvswffAAGI--GVFMTTA----DVRDVQTALMWLSGSLHAANWMLVGISACw 213
Cdd:PRK03784  127 ALLITLILLRFARrhRLSTSRLLLAGV------ALGIicSALMTWAvyfsTSLDLRQLMYWMMGGFGGVDWRQSWLMLA- 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 214 MLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLL 293
Cdd:PRK03784  200 LLPVLIWLCCQGRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL 279

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1447699740 294 LGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRRNS 344
Cdd:PRK03784  280 PGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHRA 330
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
17-340 7.68e-36

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 132.53  E-value: 7.68e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  17 VRPKNLVLLGGLFLFAVGILIFGLMHGSFFVPASEVGRALF--APENVSTdaryIVQDIRLPRVIMALLCGAMLGMAGAA 94
Cdd:PRK10440    4 VSRRLLITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMgdAPRSMTM----VVTEWRLPRVLMALLIGAALGVSGAI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  95 MQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMlGMFWRPVAGLAGGLLVALIVIFCA--REISRPRFVLIGIGVSWFF 172
Cdd:PRK10440   80 FQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQ-DLTAIALAAMAGGIVTSLLVWLLAwrNGIDTFRLIIIGIGVRAML 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 173 AAGIGVFMTTADVRDVQTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGV--NSSRLAL 250
Cdd:PRK10440  159 VAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVsvERSRLLL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 251 LRVAapIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLgSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIG 330
Cdd:PRK10440  239 MLVA--VVLTAAATALAGPISFIALVAPHIARRLSGTARWGLTQ-AALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLG 315

                         330
                  ....*....|
gi 1447699740 331 GPFFLLLLWQ 340
Cdd:PRK10440  316 GIYLIVLLIQ 325
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
35-342 6.59e-35

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 129.81  E-value: 6.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  35 ILIFGLMHGSFF------VPASEVGRALFaPENVSTDARYIVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGL 108
Cdd:PRK11228    7 AALIGLFWLSLFcysaipISAADALNALL-PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 109 IGVKEGCSVAVLWLIFQFPML--GMFWRPVAGLAGGL---LVALIVIFCAREISRPRFVLIGIGVSWFFAAGIGVFMTTA 183
Cdd:PRK11228   86 LGINSGAALAMALTSALSPTPfaGYSLAFIAACGGGLswlLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLA 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 184 DVRdVQTALMWLSGSLHAANWMLVGISACWMLPAALLLLFTARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVC 263
Cdd:PRK11228  166 EDH-AYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGAC 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447699740 264 VSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSAVSGALLVILADSIGRLAFLPLQLPAGIIISLIGGPFFLLLLWQRR 342
Cdd:PRK11228  245 VSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRRG 323
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
69-343 6.27e-26

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 105.94  E-value: 6.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740  69 IVQDIRLPRVIMALLCGAMLGMAGAAMQSIARNGLADPGLIGVKEGCSVAVLWLIFQFPMLGMFWRPVAGLAGGLLVALI 148
Cdd:PRK10441   55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLI 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 149 VIFC----AREISRPRFVLIGIGVSWFF-AAGIGVFMTTADVRDvqTALMWLSGSLHAANWMLVGISACWMLPAALLLLF 223
Cdd:PRK10441  135 VAFTgsqgGGQLSPVRLTLAGVALAAVLeGLTSGIALLNPDVYD--QLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447699740 224 TARTADIALLGHQVATGLGVNSSRLALLRVAAPIILTAVCVSCVGNIGFVGLIAPHISRFILRGGQTTLLLGSAVSGALL 303
Cdd:PRK10441  213 LSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPAL 292

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1447699740 304 VILADSIGRLaFLPLQLPAGIIISLIGGPFFLLLLWQRRN 343
Cdd:PRK10441  293 LLFADIIGRL-LVPGELRVSVVSAFIGAPVLIFLVRRKTR 331
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH