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Conserved domains on  [gi|15834400|ref|NP_313173|]
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methyl-directed mismatch repair protein MutL [Escherichia coli O157:H7 str. Sakai]

Protein Classification

DNA mismatch repair endonuclease MutL( domain architecture ID 11478033)

DNA mismatch repair endonuclease MutL is required for dam-dependent methyl-directed DNA mismatch repair; it mediates the interactions between MutH and MutS in the DNA repair system

Gene Symbol:  mutL
PubMed:  32652606|19953589
SCOP:  4000168

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
mutL PRK00095
DNA mismatch repair endonuclease MutL;
1-613 0e+00

DNA mismatch repair endonuclease MutL;


:

Pssm-ID: 234630 [Multi-domain]  Cd Length: 617  Bit Score: 808.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:PRK00095   1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGrDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF 160
Cdd:PRK00095  81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEG-GEIVEVKPAAHPVGTTIEVRDLFFNTPARRKF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  161 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAvpeGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240
Cdd:PRK00095 160 LKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRG---AGQLLQRLAAILGREFAENALPIDAEHGDLRLSGYV 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  241 ADPNHTTpALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 320
Cdd:PRK00095 237 GLPTLSR-ANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHD 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  321 FIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGRNHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQ 400
Cdd:PRK00095 316 LIVQAIQEALAQSGLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSSAPPEQSEESQEESSAEKNPLQPNAS 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  401 QGEVYRQLLQTPAPMQKPKAPEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQVQLTP--GEAP 478
Cdd:PRK00095 396 QSEAAAAASAEAAAAAPAAAPEPAEAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDklAEVG 475
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGN- 556
Cdd:PRK00095 476 LASQPLLIPLVLELSEDEADRLEEHKELLARLGLELEPfGPNSFAVREVPALLGQQELEELIRDLLDELAEEGDSDTLKe 555
                        570       580       590       600       610       620
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  557 ---IAQWIARNLMSENAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALK 613
Cdd:PRK00095 556 relLATMACHGAIRAGRRLTLEEMNALLRQLEATENPGTCPHGRPTYIELSLSDLEKLFK 615
 
Name Accession Description Interval E-value
mutL PRK00095
DNA mismatch repair endonuclease MutL;
1-613 0e+00

DNA mismatch repair endonuclease MutL;


Pssm-ID: 234630 [Multi-domain]  Cd Length: 617  Bit Score: 808.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:PRK00095   1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGrDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF 160
Cdd:PRK00095  81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEG-GEIVEVKPAAHPVGTTIEVRDLFFNTPARRKF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  161 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAvpeGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240
Cdd:PRK00095 160 LKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRG---AGQLLQRLAAILGREFAENALPIDAEHGDLRLSGYV 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  241 ADPNHTTpALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 320
Cdd:PRK00095 237 GLPTLSR-ANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHD 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  321 FIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGRNHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQ 400
Cdd:PRK00095 316 LIVQAIQEALAQSGLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSSAPPEQSEESQEESSAEKNPLQPNAS 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  401 QGEVYRQLLQTPAPMQKPKAPEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQVQLTP--GEAP 478
Cdd:PRK00095 396 QSEAAAAASAEAAAAAPAAAPEPAEAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDklAEVG 475
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGN- 556
Cdd:PRK00095 476 LASQPLLIPLVLELSEDEADRLEEHKELLARLGLELEPfGPNSFAVREVPALLGQQELEELIRDLLDELAEEGDSDTLKe 555
                        570       580       590       600       610       620
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  557 ---IAQWIARNLMSENAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALK 613
Cdd:PRK00095 556 relLATMACHGAIRAGRRLTLEEMNALLRQLEATENPGTCPHGRPTYIELSLSDLEKLFK 615
MutL COG0323
DNA mismatch repair ATPase MutL [Replication, recombination and repair];
1-547 0e+00

DNA mismatch repair ATPase MutL [Replication, recombination and repair];


Pssm-ID: 440092 [Multi-domain]  Cd Length: 515  Bit Score: 541.56  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:COG0323   2 PKIRLLPDELANQIAAGEVVERPASVVKELVENAIDAGATRIEVEIEEGGKSLIRVTDNGCGMSPEDLPLAFERHATSKI 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMdVTVKPAAHPVGTTLEVLDLFYNTPARRKF 160
Cdd:COG0323  82 RSAEDLFRIRTLGFRGEALASIASVSRLTLTTRTAGAELGTRIEVEGGKV-VEVEPAAAPKGTTVEVRDLFFNTPARRKF 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 161 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAvpeGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240
Cdd:COG0323 161 LKSDATELAHITDVVRRLALAHPDIAFTLIHNGREVFQLPG---AGDLLQRIAAIYGREFAENLLPVEAEREGLRLSGYI 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 241 ADPNHTTPALAEiQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 320
Cdd:COG0323 238 GKPEFSRSNRDY-QYFFVNGRPVRDKLLSHAVREAYRDLLPKGRYPVAVLFLELDPELVDVNVHPTKTEVRFRDEREVYD 316
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 321 FIYQGVLSVLQQqletplplddepqpaprpipenrvaagrnhfaepavrEPVAprytpapasgsrpaapwpnaqpgyqkQ 400
Cdd:COG0323 317 LVRSAVREALAQ-------------------------------------AALG--------------------------Q 333
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 401 QGEVYrqllqtpapmqkpkapepqepALAANSQSfgrvLTIV--HsdcALLERdgnIsllalpVAERWLRQVqltpGEAP 478
Cdd:COG0323 334 LHGTY---------------------ILAENEDG----LVLIdqH---AAHER---I------LYERLKKAL----AEGG 372
                       490       500       510       520       530       540       550
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGYLA 547
Cdd:COG0323 373 VASQPLLIPETLELSPAEAALLEEHLEELARLGFEIEPfGPNTVAVRAVPALLGEGDAEELLRDLLDELA 442
mutl TIGR00585
DNA mismatch repair protein MutL; All proteins in this family for which the functions are ...
1-311 8.58e-153

DNA mismatch repair protein MutL; All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273155 [Multi-domain]  Cd Length: 312  Bit Score: 442.08  E-value: 8.58e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400     1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:TIGR00585   1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRT-AEQQEAWQAYAEGRdMDVTVKPAAHPVGTTLEVLDLFYNTPARRK 159
Cdd:TIGR00585  81 QSFEDLERIETLGFRGEALASISSVSRLTITTKTsAADGLAYQALLEGG-MIESIKPAPRPVGTTVEVRDLFYNLPVRRK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   160 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAI-EWQHGDLTLRG 238
Cdd:TIGR00585 160 FLKSPKKEFRKILDVLQRYALIHPDISFSLTHDGKKVLQLSTKPNQSTKENRIRSVFGTAVLRKLIPLdEWEDLDLQLEG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15834400   239 WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVR 311
Cdd:TIGR00585 240 FISQPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312
HATPase_MutL-MLH-PMS-like cd16926
Histidine kinase-like ATPase domain of DNA mismatch repair proteins Escherichia coli MutL, ...
10-196 1.96e-112

Histidine kinase-like ATPase domain of DNA mismatch repair proteins Escherichia coli MutL, human MutL homologs (MLH/ PMS), and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of Escherichia coli MutL, human MLH1 (mutL homolog 1), human PMS1 (PMS1 homolog 1, mismatch repair system component), human MLH3 (mutL homolog 3), and human PMS2 (PMS1 homolog 2, mismatch repair system component). MutL homologs (MLH/PMS) participate in MMR (DNA mismatch repair), and in addition have role(s) in DNA damage signaling and suppression of homologous recombination (recombination between partially homologous parental DNAs). The primary role of MutL in MMR is to mediate protein-protein interactions during mismatch recognition and strand removal; a ternary complex is formed between MutS, MutL, and the mismatched DNA, which activates the MutH endonuclease.


Pssm-ID: 340403 [Multi-domain]  Cd Length: 188  Bit Score: 334.02  E-value: 1.96e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  10 LANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAI 89
Cdd:cd16926   1 VVNKIAAGEVIERPASVVKELVENSIDAGATRIDVEIEEGGLKLIRVTDNGSGISREDLELAFERHATSKISSFEDLFSI 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  90 ISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFN 169
Cdd:cd16926  81 TTLGFRGEALASIASVSRLTITTRTADDDVGTRLVVDGGGIIEEVKPAAAPVGTTVTVRDLFYNTPARRKFLKSPKTELS 160
                       170       180
                ....*....|....*....|....*..
gi 15834400 170 HIDEIIRRIALARFDVTINLSHNGKIV 196
Cdd:cd16926 161 KILDLVQRLALAHPDVSFSLTHDGKLV 187
DNA_mis_repair pfam01119
DNA mismatch repair protein, C-terminal domain; This family represents the C-terminal domain ...
214-330 3.04e-47

DNA mismatch repair protein, C-terminal domain; This family represents the C-terminal domain of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 domain 2-like fold.


Pssm-ID: 426060 [Multi-domain]  Cd Length: 117  Bit Score: 161.51  E-value: 3.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   214 AICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPAlAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLE 293
Cdd:pfam01119   2 AIYGKEFAENLLPIEKEDDGLRLSGYISKPTLSRSN-RDYQYLFVNGRPVRDKLLSHAIREAYRDLLPKGRYPVAVLFLE 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15834400   294 IDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 330
Cdd:pfam01119  81 IDPELVDVNVHPTKREVRFRDEREVYDFIKEALREAL 117
MutL_C smart00853
MutL C terminal dimerisation domain; MutL and MutS are key components of the DNA repair ...
438-562 1.48e-21

MutL C terminal dimerisation domain; MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.


Pssm-ID: 214857 [Multi-domain]  Cd Length: 140  Bit Score: 90.88  E-value: 1.48e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    438 VLTIVHSDCALLERDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQSD 517
Cdd:smart00853   1 ALGQVAGTYILAEREDGLYLLDQHAAHERILYEQLLKQAGGLESQPLLIPVRLELSPQEAALLEEHLELLRQLGFELEIF 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 15834400    518 -AQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPG----NIAQWIA 562
Cdd:smart00853  81 gPQSLILRSVPALLRQQNLQKLIPELLDLLSDEEENARPsrleALLASLA 130
 
Name Accession Description Interval E-value
mutL PRK00095
DNA mismatch repair endonuclease MutL;
1-613 0e+00

DNA mismatch repair endonuclease MutL;


Pssm-ID: 234630 [Multi-domain]  Cd Length: 617  Bit Score: 808.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:PRK00095   1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGrDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF 160
Cdd:PRK00095  81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEG-GEIVEVKPAAHPVGTTIEVRDLFFNTPARRKF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  161 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAvpeGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240
Cdd:PRK00095 160 LKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGKLVLQTRG---AGQLLQRLAAILGREFAENALPIDAEHGDLRLSGYV 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  241 ADPNHTTpALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 320
Cdd:PRK00095 237 GLPTLSR-ANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHD 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  321 FIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGRNHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQ 400
Cdd:PRK00095 316 LIVQAIQEALAQSGLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSSAPPEQSEESQEESSAEKNPLQPNAS 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  401 QGEVYRQLLQTPAPMQKPKAPEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQVQLTP--GEAP 478
Cdd:PRK00095 396 QSEAAAAASAEAAAAAPAAAPEPAEAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDklAEVG 475
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGN- 556
Cdd:PRK00095 476 LASQPLLIPLVLELSEDEADRLEEHKELLARLGLELEPfGPNSFAVREVPALLGQQELEELIRDLLDELAEEGDSDTLKe 555
                        570       580       590       600       610       620
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  557 ---IAQWIARNLMSENAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALK 613
Cdd:PRK00095 556 relLATMACHGAIRAGRRLTLEEMNALLRQLEATENPGTCPHGRPTYIELSLSDLEKLFK 615
MutL COG0323
DNA mismatch repair ATPase MutL [Replication, recombination and repair];
1-547 0e+00

DNA mismatch repair ATPase MutL [Replication, recombination and repair];


Pssm-ID: 440092 [Multi-domain]  Cd Length: 515  Bit Score: 541.56  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:COG0323   2 PKIRLLPDELANQIAAGEVVERPASVVKELVENAIDAGATRIEVEIEEGGKSLIRVTDNGCGMSPEDLPLAFERHATSKI 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMdVTVKPAAHPVGTTLEVLDLFYNTPARRKF 160
Cdd:COG0323  82 RSAEDLFRIRTLGFRGEALASIASVSRLTLTTRTAGAELGTRIEVEGGKV-VEVEPAAAPKGTTVEVRDLFFNTPARRKF 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 161 LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAvpeGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240
Cdd:COG0323 161 LKSDATELAHITDVVRRLALAHPDIAFTLIHNGREVFQLPG---AGDLLQRIAAIYGREFAENLLPVEAEREGLRLSGYI 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 241 ADPNHTTPALAEiQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHD 320
Cdd:COG0323 238 GKPEFSRSNRDY-QYFFVNGRPVRDKLLSHAVREAYRDLLPKGRYPVAVLFLELDPELVDVNVHPTKTEVRFRDEREVYD 316
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 321 FIYQGVLSVLQQqletplplddepqpaprpipenrvaagrnhfaepavrEPVAprytpapasgsrpaapwpnaqpgyqkQ 400
Cdd:COG0323 317 LVRSAVREALAQ-------------------------------------AALG--------------------------Q 333
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 401 QGEVYrqllqtpapmqkpkapepqepALAANSQSfgrvLTIV--HsdcALLERdgnIsllalpVAERWLRQVqltpGEAP 478
Cdd:COG0323 334 LHGTY---------------------ILAENEDG----LVLIdqH---AAHER---I------LYERLKKAL----AEGG 372
                       490       500       510       520       530       540       550
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGYLA 547
Cdd:COG0323 373 VASQPLLIPETLELSPAEAALLEEHLEELARLGFEIEPfGPNTVAVRAVPALLGEGDAEELLRDLLDELA 442
mutl TIGR00585
DNA mismatch repair protein MutL; All proteins in this family for which the functions are ...
1-311 8.58e-153

DNA mismatch repair protein MutL; All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273155 [Multi-domain]  Cd Length: 312  Bit Score: 442.08  E-value: 8.58e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400     1 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 80
Cdd:TIGR00585   1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    81 ASLDDLEAIISLGFRGEALASISSVSRLTLTSRT-AEQQEAWQAYAEGRdMDVTVKPAAHPVGTTLEVLDLFYNTPARRK 159
Cdd:TIGR00585  81 QSFEDLERIETLGFRGEALASISSVSRLTITTKTsAADGLAYQALLEGG-MIESIKPAPRPVGTTVEVRDLFYNLPVRRK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   160 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAI-EWQHGDLTLRG 238
Cdd:TIGR00585 160 FLKSPKKEFRKILDVLQRYALIHPDISFSLTHDGKKVLQLSTKPNQSTKENRIRSVFGTAVLRKLIPLdEWEDLDLQLEG 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15834400   239 WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVR 311
Cdd:TIGR00585 240 FISQPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312
HATPase_MutL-MLH-PMS-like cd16926
Histidine kinase-like ATPase domain of DNA mismatch repair proteins Escherichia coli MutL, ...
10-196 1.96e-112

Histidine kinase-like ATPase domain of DNA mismatch repair proteins Escherichia coli MutL, human MutL homologs (MLH/ PMS), and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of Escherichia coli MutL, human MLH1 (mutL homolog 1), human PMS1 (PMS1 homolog 1, mismatch repair system component), human MLH3 (mutL homolog 3), and human PMS2 (PMS1 homolog 2, mismatch repair system component). MutL homologs (MLH/PMS) participate in MMR (DNA mismatch repair), and in addition have role(s) in DNA damage signaling and suppression of homologous recombination (recombination between partially homologous parental DNAs). The primary role of MutL in MMR is to mediate protein-protein interactions during mismatch recognition and strand removal; a ternary complex is formed between MutS, MutL, and the mismatched DNA, which activates the MutH endonuclease.


Pssm-ID: 340403 [Multi-domain]  Cd Length: 188  Bit Score: 334.02  E-value: 1.96e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  10 LANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAI 89
Cdd:cd16926   1 VVNKIAAGEVIERPASVVKELVENSIDAGATRIDVEIEEGGLKLIRVTDNGSGISREDLELAFERHATSKISSFEDLFSI 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  90 ISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFN 169
Cdd:cd16926  81 TTLGFRGEALASIASVSRLTITTRTADDDVGTRLVVDGGGIIEEVKPAAAPVGTTVTVRDLFYNTPARRKFLKSPKTELS 160
                       170       180
                ....*....|....*....|....*..
gi 15834400 170 HIDEIIRRIALARFDVTINLSHNGKIV 196
Cdd:cd16926 161 KILDLVQRLALAHPDVSFSLTHDGKLV 187
MutL_Trans_MutL cd03482
MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in ...
208-331 1.19e-70

MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.


Pssm-ID: 239564 [Multi-domain]  Cd Length: 123  Bit Score: 223.61  E-value: 1.19e-70
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 208 KERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTpALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPA 287
Cdd:cd03482   1 KLQRLADILGEDFAEQALAIDEEAGGLRLSGWIALPTFAR-SQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPA 79
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 15834400 288 FVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 331
Cdd:cd03482  80 YVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123
DNA_mis_repair pfam01119
DNA mismatch repair protein, C-terminal domain; This family represents the C-terminal domain ...
214-330 3.04e-47

DNA mismatch repair protein, C-terminal domain; This family represents the C-terminal domain of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 domain 2-like fold.


Pssm-ID: 426060 [Multi-domain]  Cd Length: 117  Bit Score: 161.51  E-value: 3.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   214 AICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPAlAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLE 293
Cdd:pfam01119   2 AIYGKEFAENLLPIEKEDDGLRLSGYISKPTLSRSN-RDYQYLFVNGRPVRDKLLSHAIREAYRDLLPKGRYPVAVLFLE 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 15834400   294 IDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 330
Cdd:pfam01119  81 IDPELVDVNVHPTKREVRFRDEREVYDFIKEALREAL 117
MutL_Trans cd00782
MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the ...
210-330 6.08e-47

MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome. Mutation in hMLH1 accounts for a large fraction of HNPCC families. There is no convincing evidence to support hPMS1 having a role in HNPCC predisposition. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH.


Pssm-ID: 238405 [Multi-domain]  Cd Length: 122  Bit Score: 160.78  E-value: 6.08e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 210 RRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPAlAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFV 289
Cdd:cd00782   3 DRIAQVYGKEVAKNLIEVELESGDFRISGYISKPDFGRSS-KDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYPVFV 81
                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 15834400 290 LYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 330
Cdd:cd00782  82 LNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122
TopoII_MutL_Trans cd00329
MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the ...
209-311 5.98e-25

MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch repair (MMR). Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families.


Pssm-ID: 238202 [Multi-domain]  Cd Length: 107  Bit Score: 99.64  E-value: 5.98e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 209 ERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPAlAEIQYCYVNGRMMR-DRLINHAIRQACEDKLGAD---Q 284
Cdd:cd00329   2 KDRLAEILGDKVADKLIYVEGESDGFRVEGAISYPDSGRSS-KDRQFSFVNGRPVReGGTHVKAVREAYTRALNGDdvrR 80
                        90       100
                ....*....|....*....|....*..
gi 15834400 285 QPAFVLYLEIDPHQVDVNVHPAKHEVR 311
Cdd:cd00329  81 YPVAVLSLKIPPSLVDVNVHPTKEEVR 107
MutL_C smart00853
MutL C terminal dimerisation domain; MutL and MutS are key components of the DNA repair ...
438-562 1.48e-21

MutL C terminal dimerisation domain; MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.


Pssm-ID: 214857 [Multi-domain]  Cd Length: 140  Bit Score: 90.88  E-value: 1.48e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    438 VLTIVHSDCALLERDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQSD 517
Cdd:smart00853   1 ALGQVAGTYILAEREDGLYLLDQHAAHERILYEQLLKQAGGLESQPLLIPVRLELSPQEAALLEEHLELLRQLGFELEIF 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 15834400    518 -AQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPG----NIAQWIA 562
Cdd:smart00853  81 gPQSLILRSVPALLRQQNLQKLIPELLDLLSDEEENARPsrleALLASLA 130
MutL_C pfam08676
MutL C terminal dimerization domain; MutL and MutS are key components of the DNA repair ...
439-562 5.41e-21

MutL C terminal dimerization domain; MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognizes mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerization.


Pssm-ID: 430147  Cd Length: 145  Bit Score: 89.59  E-value: 5.41e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400   439 LTIVHSDCALLERDGNISLLALPVAERWLRQVQLTPGEAPV--CAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS 516
Cdd:pfam08676   4 LGQVHGTYILAENEDGLYLIDQHAAHERILYEKLKRALAEGglAAQPLLIPLVLELSPEEAALLEEHKEELAQLGFELEE 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15834400   517 -DAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPG----NIAQWIA 562
Cdd:pfam08676  84 fGPNSVIVRSVPALLRQQNLQELIRELLDELAEKGGSSLEesleELLATMA 134
HATPase_c_3 pfam13589
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents, additionally, ...
23-114 9.89e-12

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 433332 [Multi-domain]  Cd Length: 135  Bit Score: 62.73  E-value: 9.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400    23 PASVVKELVENSLDAGATRIDI--DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDdlEAIISLGFRGEALA 100
Cdd:pfam13589   1 LEGALAELIDNSIDADATNIKIevNKNRGGGTEIVIEDDGHGMSPEELINALRLATSAKEAKRG--STDLGRYGIGLKLA 78
                          90
                  ....*....|....
gi 15834400   101 SISSVSRLTLTSRT 114
Cdd:pfam13589  79 SLSLGAKLTVTSKK 92
MutL_Trans_MLH1 cd03483
MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in ...
238-335 1.98e-09

MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.


Pssm-ID: 239565 [Multi-domain]  Cd Length: 127  Bit Score: 55.70  E-value: 1.98e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 238 GWVADPNH----TTPALaeiqycYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRF- 312
Cdd:cd03483  36 GLISNANYskkkIIFIL------FINNRLVECSALRRAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFl 109
                        90       100
                ....*....|....*....|...
gi 15834400 313 HQSRLVhDFIYQgvlsVLQQQLE 335
Cdd:cd03483 110 NEEEII-ERIQK----LVEDKLS 127
MutL_Trans_hPMS_2_like cd03484
MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in ...
254-331 2.36e-09

MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.


Pssm-ID: 239566 [Multi-domain]  Cd Length: 142  Bit Score: 56.12  E-value: 2.36e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 254 QYCYVNGR----MMRDRLINHAIRQacedkLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSV 329
Cdd:cd03484  66 QFFYINGRpvdlKKVAKLINEVYKS-----FNSRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSEL 140

                ..
gi 15834400 330 LQ 331
Cdd:cd03484 141 FE 142
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
18-79 3.57e-09

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 54.68  E-value: 3.57e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15834400    18 EVVERPASVVKELVENSLD--AGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSK 79
Cdd:pfam02518   1 GDELRLRQVLSNLLDNALKhaAKAGEITVTLSEGGELTLTVEDNGIGIPPEDLPRIFEPFSTAD 64
MutL_Trans_hPMS_1_like cd03485
MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in ...
241-339 2.87e-06

MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.


Pssm-ID: 239567 [Multi-domain]  Cd Length: 132  Bit Score: 46.88  E-value: 2.87e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400 241 ADPNHTTPalaEIQYCYVNGR---MMRD--RLINHAIRQACEdKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQS 315
Cdd:cd03485  41 SDVSKTKS---DGKFISVNSRpvsLGKDigKLLRQYYSSAYR-KSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNK 116
                        90       100
                ....*....|....*....|....
gi 15834400 316 rlvhdfiyQGVLSVLQQQLETPLP 339
Cdd:cd03485 117 --------EAVLQAVENLLESLYG 132
HATPase_MORC-like cd16931
Histidine kinase-like ATPase domain of human microrchidia (MORC) family CW-type zinc finger ...
23-68 8.88e-06

Histidine kinase-like ATPase domain of human microrchidia (MORC) family CW-type zinc finger proteins MORC1-4, and related domains; This family includes the histidine kinase-like ATPase (HATPase) domain of human microrchidia (MORC) family CW-type zinc finger proteins MORC1-4, and related domains. In addition to the HATPase domain, MORC family proteins have a CW-type zinc finger domain containing four conserved cysteines and two conserved tryptophans, and coiled-coil domains at the carboxy-terminus. MORC1 has cross-species differential methylation in association with early life stress, and genome-wide association with major depressive disorder (MDD). MORC2 is involved in several nuclear processes, including transcription modulation and DNA damage repair, and exhibits a cytosolic function in lipogenesis, adipogenic differentiation, and lipid homeostasis by increasing the activity of ACLY. MORC3 regulates p53, and is an antiviral factor which plays an important role during HSV-1 and HCMV infection, and is a positive regulator of influenza virus transcription. MORC4 is highly expressed in a subset of diffuse large B-cell lymphomas and has potential as a lymphoma biomarker.


Pssm-ID: 340408 [Multi-domain]  Cd Length: 118  Bit Score: 45.09  E-value: 8.88e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 15834400  23 PASVVKELVENSLDAGATRIDIDIE----RGGAKLIRIRDNGCGIKKDEL 68
Cdd:cd16931  12 PFGAVAELVDNARDADATRLDIFIDdinlLRGGFMLSFLDDGNGMTPEEA 61
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
26-74 1.17e-05

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 44.56  E-value: 1.17e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 15834400     26 VVKELVENSLDAG--ATRIDIDIERGGAKL-IRIRDNGCGIKKDELALALAR 74
Cdd:smart00387   9 VLSNLLDNAIKYTpeGGRITVTLERDGDHVeITVEDNGPGIPPEDLEKIFEP 60
PRK04184 PRK04184
DNA topoisomerase VI subunit B; Validated
26-74 5.42e-05

DNA topoisomerase VI subunit B; Validated


Pssm-ID: 235246 [Multi-domain]  Cd Length: 535  Bit Score: 46.04  E-value: 5.42e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15834400   26 VVKELVENSLDAGAT-------RIDIDIERGGAKLIRIR--DNGCGIKKDELALALAR 74
Cdd:PRK04184  40 TVKELVDNSLDACEEagilpdiKIEIKRVDEGKDHYRVTveDNGPGIPPEEIPKVFGK 97
HATPase_TopVIB-like cd16933
Histidine kinase-like ATPase domain of type IIB topoisomerase, Topo VI, subunit B; This family ...
26-74 2.48e-04

Histidine kinase-like ATPase domain of type IIB topoisomerase, Topo VI, subunit B; This family includes the histidine kinase-like ATPase (HATPase) domain of the B subunit of topoisomerase VI (Topo VIB). Topo VI is a heterotetrameric complex composed of two TopVIA and two TopVIB subunits and is categorized as a type II B DNA topoisomerase. It is found in archaea and also in plants. Type II enzymes cleave both strands of a DNA duplex and pass a second duplex through the resulting break in an ATP-dependent mechanism. DNA cleavage by Topo VI generates two-nucleotide 5'-protruding ends.


Pssm-ID: 340410 [Multi-domain]  Cd Length: 203  Bit Score: 42.72  E-value: 2.48e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15834400  26 VVKELVENSLDAGATR-----IDIDIERGGAK--LIRIRDNGCGIKKDELALALAR 74
Cdd:cd16933  23 TVRELVENSLDATEEAgilpdIKVEIEEIGKDhyKVIVEDNGPGIPEEQIPKVFGK 78
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
24-79 3.04e-03

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 40.22  E-value: 3.04e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15834400  24 ASVVKELVENSLDA------GATRIDIDIERGGAKL-IRIRDNGCGIKKDELALALARHATSK 79
Cdd:COG3290 283 VTILGNLLDNAIEAveklpeEERRVELSIRDDGDELvIEVEDSGPGIPEELLEKIFERGFSTK 345
HATPase_GyrB-like cd16928
Histidine kinase-like ATPase domain of the B subunit of DNA gyrase; This family includes ...
27-63 4.92e-03

Histidine kinase-like ATPase domain of the B subunit of DNA gyrase; This family includes histidine kinase-like ATPase domain of the B subunit of DNA gyrase. Bacterial DNA gyrase is a type II topoisomerase (type II as it transiently cleaves both strands of DNA) which catalyzes the introduction of negative supercoils into DNA, possibly by a mechanism in which one segment of the double-stranded DNA substrate is passed through a transient break in a second segment. It consists of GyrA and GyrB subunits in an A2B2 stoichiometry; GyrA subunits catalyze strand-breakage and reunion reactions, and GyrB subunits hydrolyze ATP. DNA gyrase is found in bacteria, plants and archaea, but as it is absent in humans it is a possible drug target for the treatment of bacterial and parasite infections.


Pssm-ID: 340405 [Multi-domain]  Cd Length: 180  Bit Score: 38.29  E-value: 4.92e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 15834400  27 VKELVENSLD---AG-ATRIDIDIERGGakLIRIRDNGCGI 63
Cdd:cd16928   5 VWEIVDNSIDealAGyATEIEVTLHEDN--SITVEDNGRGI 43
PHA03378 PHA03378
EBNA-3B; Provisional
344-490 4.92e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.05  E-value: 4.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15834400  344 PQPAPRPIPENRVAAGRNHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQ-TPAPMQKPKA-P 421
Cdd:PHA03378 725 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRgAPTPQPPPQAgP 804
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15834400  422 EPQEPALAANSQSFGRVLTIVHSDCALLERDGNISlLALPVAERWLRQVQLTPG----------EAPVCAQPLLIPLRL 490
Cdd:PHA03378 805 TSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPS-LKKPAALERQAAAGPTPSpgsgtsdkivQAPVFYPPVLQPIQV 882
TOP2c smart00433
TopoisomeraseII; Eukaryotic DNA topoisomerase II, GyrB, ParE
27-63 5.30e-03

TopoisomeraseII; Eukaryotic DNA topoisomerase II, GyrB, ParE


Pssm-ID: 214659 [Multi-domain]  Cd Length: 594  Bit Score: 39.85  E-value: 5.30e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 15834400     27 VKELVENSLD---AG-ATRIDIDIERGGakLIRIRDNGCGI 63
Cdd:smart00433   6 VDEIVDNAADealAGyMDTIKVTIDKDN--SISVEDNGRGI 44
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
24-79 5.98e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 36.88  E-value: 5.98e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15834400  24 ASVVKELVENSLDAGA------TRIDIDI-ERGGAKLIRIRDNGCGIKKDELALALARHATSK 79
Cdd:cd16915   2 ITIVGNLIDNALDALAatgapnKQVEVFLrDEGDDLVIEVRDTGPGIAPELRDKVFERGVSTK 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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