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Concise Results
Standard Results
Full Results
choline:H(+) symporter [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
choline transporter ( domain architecture ID 10013377 )
choline transporter BetT is a high-affinity, proton-driven, secondary transporter, and is part of the Bet system, which is involved in the synthesis of glycine betaine from externally supplied choline
List of domain hits
Name
Accession
Description
Interval
E-value
PRK09928
PRK09928 choline transport protein BetT; Provisional
1-677
0e+00
choline transport protein BetT; Provisional
Pssm-ID: 236635
Cd Length: 679
Bit Score: 1407.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 1 MTDLSH S REKD K INPVVFYTSAGLILLFSLTTILF R DFS AL WI G RTL D WVSKTFGWYYLLAATLYIVFV VC IACSRFGS V 80
Cdd:PRK09928 3 MTDLSH K REKD R INPVVFYTSAGLILLFSLTTILF T DFS NR WI N RTL N WVSKTFGWYYLLAATLYIVFV IF IACSRFGS I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 81 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 160
Cdd:PRK09928 83 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 161 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP D S M AA K AALIAL 240
Cdd:PRK09928 163 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP E S L AA Q AALIAL 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 241 SVIIATISVTSGV D KGIRVLSELNV A LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP V EWMNNWT 320
Cdd:PRK09928 243 SVIIATISVTSGV N KGIRVLSELNV L LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP T EWMNNWT 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 321 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS V FGNSALYEIIHG G AAFAEEAM V HPERGFYSLL 400
Cdd:PRK09928 323 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS I FGNSALYEIIHG N AAFAEEAM A HPERGFYSLL 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 401 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS Q LKDINSDAP G WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 480
Cdd:PRK09928 403 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS K LKDINSDAP N WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 481 MGLPFSFVIFFVMAGLYKSLKVEDYRR E SANRDTAPR PL GLQDRL S WK K RLSR L MNYPGTRYT KQ M ME TVC Y PAMEEVAQ 560
Cdd:PRK09928 483 MGLPFSFVIFFVMAGLYKSLKVEDYRR A SANRDTAPR LV GLQDRL N WK Q RLSR V MNYPGTRYT RR M LD TVC R PAMEEVAQ 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 561 ELRLRGAYVEL KS LPPEE GQQ LGHLDLLVH M G E EQNFVYQIWPQ Q YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 640
Cdd:PRK09928 563 ELRLRGAYVEL NE LPPEE DER LGHLDLLVH L G D EQNFVYQIWPQ R YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 642
650 660 670
....*....|....*....|....*....|....*..
gi 16128299 641 YSKEQVI T DILDQYERHLNF I HLHREAPG H SVMFPDA 677
Cdd:PRK09928 643 YSKEQVI N DILDQYERHLNF L HLHREAPG N SVMFPDA 679
Name
Accession
Description
Interval
E-value
PRK09928
PRK09928 choline transport protein BetT; Provisional
1-677
0e+00
choline transport protein BetT; Provisional
Pssm-ID: 236635
Cd Length: 679
Bit Score: 1407.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 1 MTDLSH S REKD K INPVVFYTSAGLILLFSLTTILF R DFS AL WI G RTL D WVSKTFGWYYLLAATLYIVFV VC IACSRFGS V 80
Cdd:PRK09928 3 MTDLSH K REKD R INPVVFYTSAGLILLFSLTTILF T DFS NR WI N RTL N WVSKTFGWYYLLAATLYIVFV IF IACSRFGS I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 81 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 160
Cdd:PRK09928 83 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 161 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP D S M AA K AALIAL 240
Cdd:PRK09928 163 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP E S L AA Q AALIAL 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 241 SVIIATISVTSGV D KGIRVLSELNV A LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP V EWMNNWT 320
Cdd:PRK09928 243 SVIIATISVTSGV N KGIRVLSELNV L LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP T EWMNNWT 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 321 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS V FGNSALYEIIHG G AAFAEEAM V HPERGFYSLL 400
Cdd:PRK09928 323 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS I FGNSALYEIIHG N AAFAEEAM A HPERGFYSLL 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 401 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS Q LKDINSDAP G WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 480
Cdd:PRK09928 403 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS K LKDINSDAP N WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 481 MGLPFSFVIFFVMAGLYKSLKVEDYRR E SANRDTAPR PL GLQDRL S WK K RLSR L MNYPGTRYT KQ M ME TVC Y PAMEEVAQ 560
Cdd:PRK09928 483 MGLPFSFVIFFVMAGLYKSLKVEDYRR A SANRDTAPR LV GLQDRL N WK Q RLSR V MNYPGTRYT RR M LD TVC R PAMEEVAQ 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 561 ELRLRGAYVEL KS LPPEE GQQ LGHLDLLVH M G E EQNFVYQIWPQ Q YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 640
Cdd:PRK09928 563 ELRLRGAYVEL NE LPPEE DER LGHLDLLVH L G D EQNFVYQIWPQ R YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 642
650 660 670
....*....|....*....|....*....|....*..
gi 16128299 641 YSKEQVI T DILDQYERHLNF I HLHREAPG H SVMFPDA 677
Cdd:PRK09928 643 YSKEQVI N DILDQYERHLNF L HLHREAPG N SVMFPDA 679
BetT
COG1292 Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
1-515
0e+00
Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440903
Cd Length: 512
Bit Score: 683.80
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 1 M T D LSHSRE K D KI N P V VF YT SA G LIL L F S L TTI LF RDFSALWIGRTLD W VSKT FGW Y YLL AAT L YI VF VVCI A C S RF G SV 80
Cdd:COG1292 1 M S D KNKEKF K K KI D P P VF IP SA L LIL A F V L WGL LF PEAAGAVLNAAFS W ITTN FGW F YLL LVL L FV VF CLYL A F S KY G KI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 81 K LG PEQS KPEFS LL SW A AMLF A AG I GI D L M F FS VAEP VTQYMQ PP E G A - GQTI EAAR Q AM VW T L FH Y GL TG W SM YAL M G M 159
Cdd:COG1292 81 R LG GDDA KPEFS TF SW F AMLF S AG M GI G L V F WG VAEP LYHFLS PP P G V e PGSP EAAR W AM AY T F FH W GL HA W AI YAL V G L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 160 AL G YF S YR YN LPLTI R SALYP IF G K RI N GPIG HSV DI A AV IG T I FG I AT T LG I G VV Q L N Y GL SV LF D IP D S MAAKAAL IA 239
Cdd:COG1292 161 AL A YF A YR RG LPLTI S SALYP LL G D RI Y GPIG KVI DI L AV FA T V FG V AT S LG L G AL Q I N A GL NY LF G IP N S LTVQIII IA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 240 LSVIIA TIS VT SG V DKGI RV LS E LN VA LAL G L I LFVL FM G D T S F L LN AL V LNV GDY VNR F MG M T L NSF A FD r PVE W MNN W 319
Cdd:COG1292 241 VITALF TIS AV SG L DKGI KR LS N LN MV LAL L L L LFVL IV G P T L F I LN LF V QSL GDY LQN F VP M S L WTD A YG - DTG W LGG W 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 320 T L F F WAWW V AW S PFVGLF L ARISRGRTIR Q FVLG T L II P FT FT L LW L SVFG NS A LYEIIH GG AAF AE EAMVHP E RGFYS L 399
Cdd:COG1292 320 T V F Y WAWW I AW A PFVGLF I ARISRGRTIR E FVLG V L LV P TL FT F LW F SVFG GT A IHLELN GG GDL AE AVAAGV E AALFA L 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 400 L A Q Y P AF T FSASV A T I TGLL F Y VTSADSG A LVL GNF TS QLKD ins DA P G W L R V FW S V A IGL LTLGM L MTN G I SALQ NTTV 479
Cdd:COG1292 400 L E Q L P LG T ILSVL A I I LVII F F VTSADSG S LVL AML TS GGDE --- EP P R W Q R I FW G V L IGL VAAVL L LAG G L SALQ TASI 476
490 500 510
....*....|....*....|....*....|....*.
gi 16128299 480 I MG LPFSFV IFFVMAG L Y K S L KVEDY R RE SA NRDT A 515
Cdd:COG1292 477 I TA LPFSFV LLLMCVS L V K A L REDPR R LR SA EAEA A 512
BCCT
pfam02028 BCCT, betaine/carnitine/choline family transporter;
17-503
0e+00
BCCT, betaine/carnitine/choline family transporter;
Pssm-ID: 460420
Cd Length: 485
Bit Score: 613.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 17 VF YT SAGLIL L F S L TTIL F RDFSALWIGRT LDW VSKT FGW Y YLL AATLYI VF VVCI A C SR F G SVK LG PEQS KPEFS LL SW 96
Cdd:pfam02028 1 VF AV SAGLIL A F V L LGLI F PEALSAVVNTA LDW ITDN FGW F YLL LVLIFL VF ALFL A F SR Y G NIR LG GDDD KPEFS TF SW 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 97 A AMLFAAG I GI D L M F FS VAEP VTQ Y MQ - PP E G AGQ T I EAA R QAM VW T L FH Y GL TG W SM YAL MGM AL G YF S YR YN LPL T I R 175
Cdd:pfam02028 81 F AMLFAAG M GI G L V F WG VAEP LSH Y LS p PP G G EPG T P EAA Q QAM AY T F FH W GL HA W AI YAL VAL AL A YF A YR KG LPL L I S 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 176 SALYP IF G K RI N GPIG HSV DI A A V I G T I FG I AT T LG I G VV Q L N Y GLS V LF D IP DSMAAKA A L IA LSVIIA TIS VT SG V DK 255
Cdd:pfam02028 161 SALYP LL G D RI D GPIG KAI DI L A I I A T V FG V AT S LG L G AL Q I N A GLS Y LF G IP NTLTTQL A I IA IITALF TIS AV SG L DK 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 256 GI RV LS E LN VA LA LG L I LFVL FM G D T S F L LN AL V LNV GDY VNR F MG M TLNSFA F DRPVE W MNN WT L F F WAWW V AW S PFVG 335
Cdd:pfam02028 241 GI KR LS N LN MY LA VA L L LFVL IA G P T L F I LN TF V QSL GDY LQN F VP M SFYTDP F GDTGG W LGG WT I F Y WAWW I AW A PFVG 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 336 L F L ARISRGRTIR Q F V LG T L II P FT FT L LW L SVFG NS A L Y EIIH G GAAF A EEAMVH P ERGFYS LL A Q Y P AF T FSASV A TI 415
Cdd:pfam02028 321 M F I ARISRGRTIR E F I LG V L LV P TL FT F LW F SVFG GT A I Y LELN G PGDL A DAVEAG P PAALFA LL E Q L P LG T ILSVL A LL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 416 TGLL F Y VTSADSG A LV LGNFT S QLKD ins DA P G W L RVFW S V AI G LLTLGM L MTN G IS ALQ NTTV I MG LPFSF VIFFVMAG 495
Cdd:pfam02028 401 LIII F F VTSADSG T LV IAMLS S GGDL --- NP P R W Q RVFW G V LL G AVAAVL L LAG G LE ALQ SASI I AA LPFSF ILLLMCIS 477
....*...
gi 16128299 496 L Y K S L KV E 503
Cdd:pfam02028 478 L F K A L RE E 485
bcct
TIGR00842 choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family ...
55-503
0e+00
choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family (TC 2.A.15) Proteins of the BCCT family share the common functional feature of transporting molecules with a quaternary ammonium group [R-N+(CH3)3]. The BCCT family includes transporters for carnitine, choline and glycine betaine. BCCT transporters have 12 putative TMS, and are energized by pmf-driven proton symport. Some of these permeases exhibit osmosensory and osmoregulatory properties inherent to their polypeptide chains. [Transport and binding proteins, Other]
Pssm-ID: 213565
Cd Length: 452
Bit Score: 612.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 55 GW Y Y L L AA TL YIV FV VC IA C SR F G SVK LG PEQS KPEFS L LSW A AMLFAAG I G ID LMF FS VAEP V T Q Y MQ PP E GAG Q T IE - 133
Cdd:TIGR00842 1 GW A Y I L TV TL FLG FV LY IA F SR Y G KIR LG RDDE KPEFS T LSW L AMLFAAG M G AG LMF WG VAEP L T Y Y LT PP F GAG P T ST t 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 134 A AR QA MVW TLFH Y G LTG W SM YAL M G M AL G YF SY R YN LPL TIR SAL Y P IF G KRI NGPIG HSV DI A A VIG T I FG I AT T LG I G 213
Cdd:TIGR00842 81 A QE QA LAY TLFH W G IHP W AI YAL V G L AL A YF HF R KG LPL RLS SAL V P LL G EKV NGPIG KAI DI L A LVA T V FG V AT S LG L G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 214 VV Q L N Y GLS V LF D IPDS MAAK A AL I ALSVII A T ISV T SGV D KGI RV LS EL N V ALA LG L I LFVL FM G D T S FLLN AL V LNV G 293
Cdd:TIGR00842 161 AP Q I N A GLS A LF G IPDS FWLQ A LI I LCVTAL A C ISV A SGV G KGI KI LS NI N M ALA FL L L LFVL IV G P T V FLLN SF V DSI G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 294 D Y VNR F MG M TLNSFAF D RPVE W MNN WT L F F WAWW VA WSPFVG L F L ARISRGRTIR Q F VL G T L II P FT FT L LW L SVFGNSA 373
Cdd:TIGR00842 241 N Y LQN F PQ M SFRTDPD D GKGG W PGG WT V F Y WAWW IS WSPFVG M F I ARISRGRTIR E F IF G V L LG P TA FT W LW F SVFGNSA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 374 L YEIIH GG a AFAEEAM V HPE -- R GFYS LLA QY P AF T FSASV A T I TGLL F YV TSADS GA LVL G N F TS QLKDINSDA P G W L R 451
Cdd:TIGR00842 321 L LLQQN GG - FINGPFV V ETN ga R ALFG LLA AL P LG T ITMAL A L I LIII F FI TSADS AS LVL A N T TS RGGQLGEEP P K W V R 399
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 16128299 452 VFW S VAIGL LT L GM L MTN G - IS ALQ N TT V I MG LPFSFV IFF VM AG L Y K S LK VE 503
Cdd:TIGR00842 400 VFW A VAIGL IA L VL L FSG G s LA ALQ T TT I I AA LPFSFV MLV VM FS L I K D LK QD 452
Name
Accession
Description
Interval
E-value
PRK09928
PRK09928 choline transport protein BetT; Provisional
1-677
0e+00
choline transport protein BetT; Provisional
Pssm-ID: 236635
Cd Length: 679
Bit Score: 1407.52
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 1 MTDLSH S REKD K INPVVFYTSAGLILLFSLTTILF R DFS AL WI G RTL D WVSKTFGWYYLLAATLYIVFV VC IACSRFGS V 80
Cdd:PRK09928 3 MTDLSH K REKD R INPVVFYTSAGLILLFSLTTILF T DFS NR WI N RTL N WVSKTFGWYYLLAATLYIVFV IF IACSRFGS I 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 81 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 160
Cdd:PRK09928 83 KLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 161 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP D S M AA K AALIAL 240
Cdd:PRK09928 163 LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIP E S L AA Q AALIAL 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 241 SVIIATISVTSGV D KGIRVLSELNV A LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP V EWMNNWT 320
Cdd:PRK09928 243 SVIIATISVTSGV N KGIRVLSELNV L LALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP T EWMNNWT 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 321 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS V FGNSALYEIIHG G AAFAEEAM V HPERGFYSLL 400
Cdd:PRK09928 323 LFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLS I FGNSALYEIIHG N AAFAEEAM A HPERGFYSLL 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 401 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS Q LKDINSDAP G WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 480
Cdd:PRK09928 403 AQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTS K LKDINSDAP N WLRVFWSVAIGLLTLGMLMTNGISALQNTTVI 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 481 MGLPFSFVIFFVMAGLYKSLKVEDYRR E SANRDTAPR PL GLQDRL S WK K RLSR L MNYPGTRYT KQ M ME TVC Y PAMEEVAQ 560
Cdd:PRK09928 483 MGLPFSFVIFFVMAGLYKSLKVEDYRR A SANRDTAPR LV GLQDRL N WK Q RLSR V MNYPGTRYT RR M LD TVC R PAMEEVAQ 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 561 ELRLRGAYVEL KS LPPEE GQQ LGHLDLLVH M G E EQNFVYQIWPQ Q YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 640
Cdd:PRK09928 563 ELRLRGAYVEL NE LPPEE DER LGHLDLLVH L G D EQNFVYQIWPQ R YSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMD 642
650 660 670
....*....|....*....|....*....|....*..
gi 16128299 641 YSKEQVI T DILDQYERHLNF I HLHREAPG H SVMFPDA 677
Cdd:PRK09928 643 YSKEQVI N DILDQYERHLNF L HLHREAPG N SVMFPDA 679
BetT
COG1292 Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
1-515
0e+00
Choline-glycine betaine transporter [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440903
Cd Length: 512
Bit Score: 683.80
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 1 M T D LSHSRE K D KI N P V VF YT SA G LIL L F S L TTI LF RDFSALWIGRTLD W VSKT FGW Y YLL AAT L YI VF VVCI A C S RF G SV 80
Cdd:COG1292 1 M S D KNKEKF K K KI D P P VF IP SA L LIL A F V L WGL LF PEAAGAVLNAAFS W ITTN FGW F YLL LVL L FV VF CLYL A F S KY G KI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 81 K LG PEQS KPEFS LL SW A AMLF A AG I GI D L M F FS VAEP VTQYMQ PP E G A - GQTI EAAR Q AM VW T L FH Y GL TG W SM YAL M G M 159
Cdd:COG1292 81 R LG GDDA KPEFS TF SW F AMLF S AG M GI G L V F WG VAEP LYHFLS PP P G V e PGSP EAAR W AM AY T F FH W GL HA W AI YAL V G L 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 160 AL G YF S YR YN LPLTI R SALYP IF G K RI N GPIG HSV DI A AV IG T I FG I AT T LG I G VV Q L N Y GL SV LF D IP D S MAAKAAL IA 239
Cdd:COG1292 161 AL A YF A YR RG LPLTI S SALYP LL G D RI Y GPIG KVI DI L AV FA T V FG V AT S LG L G AL Q I N A GL NY LF G IP N S LTVQIII IA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 240 LSVIIA TIS VT SG V DKGI RV LS E LN VA LAL G L I LFVL FM G D T S F L LN AL V LNV GDY VNR F MG M T L NSF A FD r PVE W MNN W 319
Cdd:COG1292 241 VITALF TIS AV SG L DKGI KR LS N LN MV LAL L L L LFVL IV G P T L F I LN LF V QSL GDY LQN F VP M S L WTD A YG - DTG W LGG W 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 320 T L F F WAWW V AW S PFVGLF L ARISRGRTIR Q FVLG T L II P FT FT L LW L SVFG NS A LYEIIH GG AAF AE EAMVHP E RGFYS L 399
Cdd:COG1292 320 T V F Y WAWW I AW A PFVGLF I ARISRGRTIR E FVLG V L LV P TL FT F LW F SVFG GT A IHLELN GG GDL AE AVAAGV E AALFA L 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 400 L A Q Y P AF T FSASV A T I TGLL F Y VTSADSG A LVL GNF TS QLKD ins DA P G W L R V FW S V A IGL LTLGM L MTN G I SALQ NTTV 479
Cdd:COG1292 400 L E Q L P LG T ILSVL A I I LVII F F VTSADSG S LVL AML TS GGDE --- EP P R W Q R I FW G V L IGL VAAVL L LAG G L SALQ TASI 476
490 500 510
....*....|....*....|....*....|....*.
gi 16128299 480 I MG LPFSFV IFFVMAG L Y K S L KVEDY R RE SA NRDT A 515
Cdd:COG1292 477 I TA LPFSFV LLLMCVS L V K A L REDPR R LR SA EAEA A 512
BCCT
pfam02028 BCCT, betaine/carnitine/choline family transporter;
17-503
0e+00
BCCT, betaine/carnitine/choline family transporter;
Pssm-ID: 460420
Cd Length: 485
Bit Score: 613.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 17 VF YT SAGLIL L F S L TTIL F RDFSALWIGRT LDW VSKT FGW Y YLL AATLYI VF VVCI A C SR F G SVK LG PEQS KPEFS LL SW 96
Cdd:pfam02028 1 VF AV SAGLIL A F V L LGLI F PEALSAVVNTA LDW ITDN FGW F YLL LVLIFL VF ALFL A F SR Y G NIR LG GDDD KPEFS TF SW 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 97 A AMLFAAG I GI D L M F FS VAEP VTQ Y MQ - PP E G AGQ T I EAA R QAM VW T L FH Y GL TG W SM YAL MGM AL G YF S YR YN LPL T I R 175
Cdd:pfam02028 81 F AMLFAAG M GI G L V F WG VAEP LSH Y LS p PP G G EPG T P EAA Q QAM AY T F FH W GL HA W AI YAL VAL AL A YF A YR KG LPL L I S 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 176 SALYP IF G K RI N GPIG HSV DI A A V I G T I FG I AT T LG I G VV Q L N Y GLS V LF D IP DSMAAKA A L IA LSVIIA TIS VT SG V DK 255
Cdd:pfam02028 161 SALYP LL G D RI D GPIG KAI DI L A I I A T V FG V AT S LG L G AL Q I N A GLS Y LF G IP NTLTTQL A I IA IITALF TIS AV SG L DK 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 256 GI RV LS E LN VA LA LG L I LFVL FM G D T S F L LN AL V LNV GDY VNR F MG M TLNSFA F DRPVE W MNN WT L F F WAWW V AW S PFVG 335
Cdd:pfam02028 241 GI KR LS N LN MY LA VA L L LFVL IA G P T L F I LN TF V QSL GDY LQN F VP M SFYTDP F GDTGG W LGG WT I F Y WAWW I AW A PFVG 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 336 L F L ARISRGRTIR Q F V LG T L II P FT FT L LW L SVFG NS A L Y EIIH G GAAF A EEAMVH P ERGFYS LL A Q Y P AF T FSASV A TI 415
Cdd:pfam02028 321 M F I ARISRGRTIR E F I LG V L LV P TL FT F LW F SVFG GT A I Y LELN G PGDL A DAVEAG P PAALFA LL E Q L P LG T ILSVL A LL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 416 TGLL F Y VTSADSG A LV LGNFT S QLKD ins DA P G W L RVFW S V AI G LLTLGM L MTN G IS ALQ NTTV I MG LPFSF VIFFVMAG 495
Cdd:pfam02028 401 LIII F F VTSADSG T LV IAMLS S GGDL --- NP P R W Q RVFW G V LL G AVAAVL L LAG G LE ALQ SASI I AA LPFSF ILLLMCIS 477
....*...
gi 16128299 496 L Y K S L KV E 503
Cdd:pfam02028 478 L F K A L RE E 485
bcct
TIGR00842 choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family ...
55-503
0e+00
choline/carnitine/betaine transport; The Betaine/Carnitine/Choline Transporter (BCCT) Family (TC 2.A.15) Proteins of the BCCT family share the common functional feature of transporting molecules with a quaternary ammonium group [R-N+(CH3)3]. The BCCT family includes transporters for carnitine, choline and glycine betaine. BCCT transporters have 12 putative TMS, and are energized by pmf-driven proton symport. Some of these permeases exhibit osmosensory and osmoregulatory properties inherent to their polypeptide chains. [Transport and binding proteins, Other]
Pssm-ID: 213565
Cd Length: 452
Bit Score: 612.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 55 GW Y Y L L AA TL YIV FV VC IA C SR F G SVK LG PEQS KPEFS L LSW A AMLFAAG I G ID LMF FS VAEP V T Q Y MQ PP E GAG Q T IE - 133
Cdd:TIGR00842 1 GW A Y I L TV TL FLG FV LY IA F SR Y G KIR LG RDDE KPEFS T LSW L AMLFAAG M G AG LMF WG VAEP L T Y Y LT PP F GAG P T ST t 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 134 A AR QA MVW TLFH Y G LTG W SM YAL M G M AL G YF SY R YN LPL TIR SAL Y P IF G KRI NGPIG HSV DI A A VIG T I FG I AT T LG I G 213
Cdd:TIGR00842 81 A QE QA LAY TLFH W G IHP W AI YAL V G L AL A YF HF R KG LPL RLS SAL V P LL G EKV NGPIG KAI DI L A LVA T V FG V AT S LG L G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 214 VV Q L N Y GLS V LF D IPDS MAAK A AL I ALSVII A T ISV T SGV D KGI RV LS EL N V ALA LG L I LFVL FM G D T S FLLN AL V LNV G 293
Cdd:TIGR00842 161 AP Q I N A GLS A LF G IPDS FWLQ A LI I LCVTAL A C ISV A SGV G KGI KI LS NI N M ALA FL L L LFVL IV G P T V FLLN SF V DSI G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 294 D Y VNR F MG M TLNSFAF D RPVE W MNN WT L F F WAWW VA WSPFVG L F L ARISRGRTIR Q F VL G T L II P FT FT L LW L SVFGNSA 373
Cdd:TIGR00842 241 N Y LQN F PQ M SFRTDPD D GKGG W PGG WT V F Y WAWW IS WSPFVG M F I ARISRGRTIR E F IF G V L LG P TA FT W LW F SVFGNSA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 374 L YEIIH GG a AFAEEAM V HPE -- R GFYS LLA QY P AF T FSASV A T I TGLL F YV TSADS GA LVL G N F TS QLKDINSDA P G W L R 451
Cdd:TIGR00842 321 L LLQQN GG - FINGPFV V ETN ga R ALFG LLA AL P LG T ITMAL A L I LIII F FI TSADS AS LVL A N T TS RGGQLGEEP P K W V R 399
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 16128299 452 VFW S VAIGL LT L GM L MTN G - IS ALQ N TT V I MG LPFSFV IFF VM AG L Y K S LK VE 503
Cdd:TIGR00842 400 VFW A VAIGL IA L VL L FSG G s LA ALQ T TT I I AA LPFSFV MLV VM FS L I K D LK QD 452
PRK03356
PRK03356 L-carnitine/gamma-butyrobetaine antiport BCCT transporter;
4-502
2.77e-66
L-carnitine/gamma-butyrobetaine antiport BCCT transporter;
Pssm-ID: 179568
Cd Length: 504
Bit Score: 226.54
E-value: 2.77e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 4 LSHSRE K DK I N P V VF YTSAGLILLFSLT T ILFR D FSALW I GRTLDW V SKTF GW YY ------ L L AATLYI VF vvciac SRF 77
Cdd:PRK03356 1 MKNEKK K TG I E P K VF FPPLIIVGILCWL T VRDL D AANVV I NAVFSY V TNVW GW AF ewymvv M L FGWFWL VF ------ GPY 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 78 GSVK LG P E qs KPEFS LL SW AA M L FA AGIGIDLM F FSVA E p VTQ Y MQ - PP E G A - GQTIE A ARQAMVWT LFH Y G LTG W SM Y A 155
Cdd:PRK03356 75 AKKR LG D E -- KPEFS TA SW IF M M FA SCTSAAVL F WGSI E - IYY Y IS t PP F G L e PNSTG A KELGLAYS LFH W G PLP W AT Y S 151
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 156 LMGM A L GYF SYRYNLPL t IR -- S A L Y P IF G - K RIN G PI G HS VD IAAVIGT IF GIA T T LG IGVVQLNYGLSV LF D IP DSMA 232
Cdd:PRK03356 152 FLSV A F GYF FFVRKMDV - IR ps S T L V P LV G e K HAK G LF G TI VD NFYLVAL IF AMG T S LG LATPLVTECMQW LF G IP HTLQ 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 233 AK A AL I ALSV I IAT I S V TS G VD KG I R VL S ELNVA L ALGLILF V LFM G D TSF LL N ALVLN VG DYVNRFMG M TLNSFAFDRP 312
Cdd:PRK03356 231 LD A II I TCWI I LNA I C V AC G LQ KG V R IA S DVRSY L SFLMLGW V FIV G G TSF IM N YFTDS VG MLLMYLPR M LFYTDPIGKG 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 313 v EWMNN WT L F F WAWWV AWSPFVGL FLARISRGRT I R QFVL G TLIIPFTF T LLWLS V F G NSA L yeiihggaafae EA M VHP 392
Cdd:PRK03356 311 - GFPQG WT V F Y WAWWV IYAIQMSI FLARISRGRT V R ELCF G MVLGLTAS T WILWT V L G SNT L ------------ LL M DKN 377
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 393 ERGFYS L LA QY PAF -------- TFSA S V AT IT G LLFY ----- VT SADSGALV L GNF T SQLKDINSDA P GWL R VF WS VAI G 459
Cdd:PRK03356 378 IINIPN L IE QY GVA raiietwa ALPL S T AT MW G FFIL cfiat VT LINACSYT L AMS T CREVRDGEEP P LLV R IG WS ILV G 457
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 16128299 460 LLTLGM L MTN G ISAL Q NTTVIM G L P FS FV IFF V MAGLY K SL K V 502
Cdd:PRK03356 458 IIGIVL L ALG G LKPI Q TAIIAG G C P LF FV NIM V TLSFI K DA K Q 500
PRK09950
PRK09950 putative transporter; Provisional
20-511
2.48e-65
putative transporter; Provisional
Pssm-ID: 236636
Cd Length: 506
Bit Score: 223.90
E-value: 2.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 20 TS AGLILLFSLTTI LF RDF SA LWIGRTLD WV SK TFG WYYL L AAT L YIVF V VCI A C S RF G SVK LG pe QS KPE F S L LSW AA M 99
Cdd:PRK09950 15 TS LLAVFFIVAALS LF PQQ SA AAANTIFQ WV TR TFG SPVQ L FVL L AMIL V LYL A T S KY G NIR LG -- EG KPE Y S T LSW LF M 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 100 LFA AG I G IDLMFFS V A E PVTQ Y MQ P PEG - A GQTIE A ARQAMVWTL FH Y G LTG W SM YAL MGMALG Y - F SY R Y N LP L TIRSA 177
Cdd:PRK09950 93 FIC AG L G SSTLYWG V M E WAYY Y QT P GLN i A PRSPK A LEYSVSYSF FH W G ISA W AT YAL ASLIMA Y h F HV R K N KG L SLSGI 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 178 LYP I F G KRIN GP I G HS VD IAAV I G T IFGIATT L GIGVVQLNY GLS V L FDI P DSMAAK A AL I A LS VI I ATI S VTS G V D K G I 257
Cdd:PRK09950 173 IAA I T G VKPQ GP W G RL VD LMFL I A T VGALTIS L VVTAATFTR GLS A L TGL P NNFTVQ A FV I L LS GV I FCL S SYI G I D N G L 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 258 RV LS ELNVAL A LGLI L F VL FM G D T S F LL N ALVLNV G DYVNR F MG M T L ----- NSFA F D R pvewmn NWT L F F W A WW VAWS P 332
Cdd:PRK09950 253 QR LS KMVGWG A FLFA L L VL IV G P T E F IT N NIINSI G LTTQN F LQ M S L ftdpm GDGS F T R ------ NWT V F Y W L WW ISYT P 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 333 F V GL F LA R I SRGR T I RQFVL G TLIIPFTFTLLWLS V FGNS A LYEI I H G -------- GAAFA E E A MVH pergfys LL AQY P 404
Cdd:PRK09950 327 G V AM F VT R V SRGR K I KEVIW G LILGSSVGCWFFFG V LESY A IHQF I N G vinvpqil NTLGG E T A VQQ ------- LL SSL P 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128299 405 A FTFSASVATITGLL F YVTSA D SG A L - VLGNF T SQ L KDINSDAP G w LR V FW S V A I G L LT L GM L M T NG - ISALQN T T V IMG 482
Cdd:PRK09950 400 A GKLFLAAYLGIMII F LASHM D AV A Y t MAATS T RN L REGDDPDR G - LR L FW C V V I T L IP L SI L F T GA s LDTMKT T V V LTA 478
490 500
....*....|....*....|....*....
gi 16128299 483 LPF SFVIFFVMA G LYKS LK v E DY RRES A N 511
Cdd:PRK09950 479 LPF LVILLIKVY G FIRW LK - Q DY ADVP A H 506
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
