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Conserved domains on  [gi|16128363|ref|NP_414912|]
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surface-exposed outer membrane lipoprotein [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

DUF1615 domain-containing protein( domain architecture ID 10544151)

DUF1615 domain-containing protein such as Escherichia coli YaiW

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1615 pfam07759
Protein of unknown function (DUF1615); This is a family of proteins of unknown function ...
49-363 0e+00

Protein of unknown function (DUF1615); This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis.


:

Pssm-ID: 429641  Cd Length: 320  Bit Score: 588.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363    49 SVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKS 128
Cdd:pfam07759   1 RVKDRDGWAQDIQAAFEALKIPPTAENVCAVLAVIEQESNFQADPVVPGLGKIARKEIDRRAERLHVPGFLVDTALLQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   129 PNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTK-GYPWKMDGTVRQEVFSRR 207
Cdd:pfam07759  81 PDGRTYSERLDAVRTEKQLSALYDDFIDMVPMGQKLFGGLNPVTTGGPMQVSVAFAEEHARdGYPYPVDGSLRDEVFTRR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   208 GGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYD---SKEPGKTELATRKLAA 284
Cdd:pfam07759 161 GGVYFGIAHLLGYPANYDDPLYRFADFNAGWYASRNAAFQAAVSRLSGRKLALDGDLLLYDnggSSEPSSTELALRALAK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128363   285 KLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMK 363
Cdd:pfam07759 241 RLGLSEAQIRRDLEQEKSADFEQTPLYRRVFALADKKAGKRLPRAVLPGITLKSPKITRKLTTAWFAKRVDERYQRCMA 319
 
Name Accession Description Interval E-value
DUF1615 pfam07759
Protein of unknown function (DUF1615); This is a family of proteins of unknown function ...
49-363 0e+00

Protein of unknown function (DUF1615); This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis.


Pssm-ID: 429641  Cd Length: 320  Bit Score: 588.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363    49 SVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKS 128
Cdd:pfam07759   1 RVKDRDGWAQDIQAAFEALKIPPTAENVCAVLAVIEQESNFQADPVVPGLGKIARKEIDRRAERLHVPGFLVDTALLQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   129 PNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTK-GYPWKMDGTVRQEVFSRR 207
Cdd:pfam07759  81 PDGRTYSERLDAVRTEKQLSALYDDFIDMVPMGQKLFGGLNPVTTGGPMQVSVAFAEEHARdGYPYPVDGSLRDEVFTRR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   208 GGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYD---SKEPGKTELATRKLAA 284
Cdd:pfam07759 161 GGVYFGIAHLLGYPANYDDPLYRFADFNAGWYASRNAAFQAAVSRLSGRKLALDGDLLLYDnggSSEPSSTELALRALAK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128363   285 KLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMK 363
Cdd:pfam07759 241 RLGLSEAQIRRDLEQEKSADFEQTPLYRRVFALADKKAGKRLPRAVLPGITLKSPKITRKLTTAWFAKRVDERYQRCMA 319
 
Name Accession Description Interval E-value
DUF1615 pfam07759
Protein of unknown function (DUF1615); This is a family of proteins of unknown function ...
49-363 0e+00

Protein of unknown function (DUF1615); This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis.


Pssm-ID: 429641  Cd Length: 320  Bit Score: 588.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363    49 SVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIPAFLVHTALKIKS 128
Cdd:pfam07759   1 RVKDRDGWAQDIQAAFEALKIPPTAENVCAVLAVIEQESNFQADPVVPGLGKIARKEIDRRAERLHVPGFLVDTALLQPS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   129 PNGKSYSERLDSVRTEKQLSAIFDDLINMVPMGQTLFGSLNPVRTGGPMQVSIAFAEQHTK-GYPWKMDGTVRQEVFSRR 207
Cdd:pfam07759  81 PDGRTYSERLDAVRTEKQLSALYDDFIDMVPMGQKLFGGLNPVTTGGPMQVSVAFAEEHARdGYPYPVDGSLRDEVFTRR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16128363   208 GGLWFGTYHLLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYD---SKEPGKTELATRKLAA 284
Cdd:pfam07759 161 GGVYFGIAHLLGYPANYDDPLYRFADFNAGWYASRNAAFQAAVSRLSGRKLALDGDLLLYDnggSSEPSSTELALRALAK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16128363   285 KLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGIQLESPKITRNLTTAWFAKRVDERRARCMK 363
Cdd:pfam07759 241 RLGLSEAQIRRDLEQEKSADFEQTPLYRRVFALADKKAGKRLPRAVLPGITLKSPKITRKLTTAWFAKRVDERYQRCMA 319
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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